| Back to Multiple platform build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-10-16 11:36:05 -0400 (Mon, 16 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 579/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DNAcopy 1.74.1 (landing page) Venkatraman E. Seshan
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the DNAcopy package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DNAcopy.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: DNAcopy |
| Version: 1.74.1 |
| Command: rm -rf DNAcopy.buildbin-libdir && mkdir DNAcopy.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=DNAcopy.buildbin-libdir DNAcopy_1.74.1.tar.gz |
| StartedAt: 2023-10-16 08:43:28 -0400 (Mon, 16 Oct 2023) |
| EndedAt: 2023-10-16 08:43:39 -0400 (Mon, 16 Oct 2023) |
| EllapsedTime: 11.1 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: DNAcopy_1.74.1.zip |
| PackageFileSize: 553.5 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf DNAcopy.buildbin-libdir && mkdir DNAcopy.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=DNAcopy.buildbin-libdir DNAcopy_1.74.1.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'DNAcopy' ... ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 12.2.0' using Fortran compiler: 'GNU Fortran (GCC) 12.2.0' gfortran -O2 -mfpmath=sse -msse2 -mstackrealign -c cbsWtstats.f -o cbsWtstats.o gfortran -O2 -mfpmath=sse -msse2 -mstackrealign -c cbststats.f -o cbststats.o gfortran -O2 -mfpmath=sse -msse2 -mstackrealign -c changepoints-wtd.f -o changepoints-wtd.o gfortran -O2 -mfpmath=sse -msse2 -mstackrealign -c changepoints.f -o changepoints.o gfortran -O2 -mfpmath=sse -msse2 -mstackrealign -c esegment.f -o esegment.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c flchoose.c -o flchoose.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fphyper.c -o fphyper.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fpnorm.c -o fpnorm.o gfortran -O2 -mfpmath=sse -msse2 -mstackrealign -c getbdry.f -o getbdry.o gfortran -O2 -mfpmath=sse -msse2 -mstackrealign -c prune.f -o prune.o gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rshared.c -o rshared.o gfortran -O2 -mfpmath=sse -msse2 -mstackrealign -c segmentp.f -o segmentp.o gfortran -O2 -mfpmath=sse -msse2 -mstackrealign -c smoothCNA.f -o smoothCNA.o gfortran -O2 -mfpmath=sse -msse2 -mstackrealign -c tailprobs.f -o tailprobs.o gcc -shared -s -static-libgcc -o DNAcopy.dll tmp.def cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -lgfortran -lm -lquadmath -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.17-bioc/meat/DNAcopy.buildbin-libdir/00LOCK-DNAcopy/00new/DNAcopy/libs/x64 ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'DNAcopy' as DNAcopy_1.74.1.zip * DONE (DNAcopy)