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###
### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BGmix
###
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* checking for file ‘BGmix/DESCRIPTION’ ... OK
* preparing ‘BGmix’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘BGmix’ ...
** using staged installation
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for gcc option to accept ISO C99... none needed
checking for cos in -lm... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I ../boostIncl -I/usr/local/include -fpic -g -O2 -Wall -g -O2 -Wall -DUSING_R -c BGmix_main.cpp -o BGmix_main.o
In file included from ../boostIncl/boost/config.hpp:57,
from ../boostIncl/boost/random/linear_congruential.hpp:22,
from ../boostIncl/boost/random.hpp:36,
from rand.hh:32,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
../boostIncl/boost/random/detail/const_mod.hpp: In static member function ‘static IntType boost::random::const_mod<IntType, m>::invert_euclidian(IntType)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_148’ locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/detail/const_mod.hpp:148:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
148 | BOOST_STATIC_ASSERT(m > 0);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_152’ locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/detail/const_mod.hpp:152:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
152 | BOOST_STATIC_ASSERT(boost::integer_traits<IntType>::is_signed);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/linear_congruential.hpp: In constructor ‘boost::random::linear_congruential<IntType, a, c, m, val>::linear_congruential(IntType)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_63’ locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/linear_congruential.hpp:63:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
63 | BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/inversive_congruential.hpp: In constructor ‘boost::random::inversive_congruential<IntType, a, b, p, val>::inversive_congruential(IntType)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_50’ locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/inversive_congruential.hpp:50:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
50 | BOOST_STATIC_ASSERT(b >= 0);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_51’ locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/inversive_congruential.hpp:51:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
51 | BOOST_STATIC_ASSERT(p > 1);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_52’ locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/inversive_congruential.hpp:52:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
52 | BOOST_STATIC_ASSERT(a >= 1);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/shuffle_output.hpp: In member function ‘void boost::random::shuffle_output<UniformRandomNumberGenerator, k, val>::init()’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_124’ locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/shuffle_output.hpp:124:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
124 | BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/mersenne_twister.hpp: In member function ‘void boost::random::mersenne_twister<UIntType, w, n, m, r, a, u, s, b, t, c, l, val>::seed(Generator&)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_99’ locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/mersenne_twister.hpp:99:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
99 | BOOST_STATIC_ASSERT(!std::numeric_limits<result_type>::is_signed);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/subtract_with_carry.hpp: In constructor ‘boost::random::subtract_with_carry<IntType, m, s, r, val>::subtract_with_carry()’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_83’ locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/subtract_with_carry.hpp:83:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
83 | BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_signed);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_84’ locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/subtract_with_carry.hpp:84:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
84 | BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/linear_feedback_shift.hpp: In constructor ‘boost::random::linear_feedback_shift<UIntType, w, k, q, s, val>::linear_feedback_shift(UIntType)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_55’ locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/linear_feedback_shift.hpp:55:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
55 | BOOST_STATIC_ASSERT(std::numeric_limits<UIntType>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_56’ locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/linear_feedback_shift.hpp:56:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
56 | BOOST_STATIC_ASSERT(!std::numeric_limits<UIntType>::is_signed);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/linear_feedback_shift.hpp: In constructor ‘boost::random::linear_feedback_shift<UIntType, w, k, q, s, val>::linear_feedback_shift(It&, It)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_69’ locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/linear_feedback_shift.hpp:69:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
69 | BOOST_STATIC_ASSERT(std::numeric_limits<UIntType>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_70’ locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/linear_feedback_shift.hpp:70:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
70 | BOOST_STATIC_ASSERT(!std::numeric_limits<UIntType>::is_signed);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/xor_combine.hpp: In member function ‘boost::random::xor_combine<URNG1, s1, URNG2, s2, val>::result_type boost::random::xor_combine<URNG1, s1, URNG2, s2, val>::operator()()’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_67’ locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/xor_combine.hpp:67:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
67 | BOOST_STATIC_ASSERT(std::numeric_limits<typename base1_type::result_type>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_68’ locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/xor_combine.hpp:68:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
68 | BOOST_STATIC_ASSERT(std::numeric_limits<typename base2_type::result_type>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_69’ locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/xor_combine.hpp:69:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
69 | BOOST_STATIC_ASSERT(std::numeric_limits<typename base1_type::result_type>::digits >= std::numeric_limits<typename base2_type::result_type>::digits);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/uniform_smallint.hpp: In constructor ‘boost::detail::uniform_smallint_float<UniformRandomNumberGenerator, IntType>::uniform_smallint_float(boost::detail::uniform_smallint_float<UniformRandomNumberGenerator, IntType>::base_type&, IntType, IntType)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_121’ locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/uniform_smallint.hpp:121:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
121 | BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_122’ locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/uniform_smallint.hpp:122:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
122 | BOOST_STATIC_ASSERT(!std::numeric_limits<typename base_type::result_type>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/uniform_smallint.hpp: In constructor ‘boost::uniform_smallint<IntType>::uniform_smallint(IntType, IntType)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_170’ locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/uniform_smallint.hpp:170:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
170 | BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/uniform_int.hpp: In constructor ‘boost::uniform_int<IntType>::uniform_int(IntType, IntType)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_47’ locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/uniform_int.hpp:47:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
47 | BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/random_number_generator.hpp: In constructor ‘boost::random_number_generator<UniformRandomNumberGenerator, IntType>::random_number_generator(boost::random_number_generator<UniformRandomNumberGenerator, IntType>::base_type&)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_38’ locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/random_number_generator.hpp:38:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
38 | BOOST_STATIC_ASSERT(std::numeric_limits<result_type>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/uniform_real.hpp: In constructor ‘boost::uniform_real<RealType>::uniform_real(RealType, RealType)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_41’ locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/uniform_real.hpp:41:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
41 | BOOST_STATIC_ASSERT(!std::numeric_limits<RealType>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/random/poisson_distribution.hpp: In constructor ‘boost::poisson_distribution<IntType, RealType>::poisson_distribution(const RealType&)’:
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_38’ locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/poisson_distribution.hpp:38:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
38 | BOOST_STATIC_ASSERT(std::numeric_limits<IntType>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:21: warning: typedef ‘boost_static_assert_typedef_39’ locally defined but not used [-Wunused-local-typedefs]
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro ‘BOOST_DO_JOIN2’
523 | #define BOOST_DO_JOIN2( X, Y ) X##Y
| ^
../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro ‘BOOST_DO_JOIN’
521 | #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y )
| ^~~~~~~~~~~~~
../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro ‘BOOST_JOIN’
105 | BOOST_JOIN(boost_static_assert_typedef_, __LINE__)
| ^~~~~~~~~~
../boostIncl/boost/random/poisson_distribution.hpp:39:5: note: in expansion of macro ‘BOOST_STATIC_ASSERT’
39 | BOOST_STATIC_ASSERT(!std::numeric_limits<RealType>::is_integer);
| ^~~~~~~~~~~~~~~~~~~
In file included from updates_BGmix.h:1,
from BGmix_main.cpp:25:
rand.hh: In member function ‘RealType Rand<GenType, RealType>::Normal()’:
rand.hh:368:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
368 | if(u0<.5) return y; return -y;
| ^~
rand.hh:368:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
368 | if(u0<.5) return y; return -y;
| ^~~~~~
rand.hh:375:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
375 | if(u0<.5) return y; return -y;
| ^~
rand.hh:375:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
375 | if(u0<.5) return y; return -y;
| ^~~~~~
rand.hh:382:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
382 | if(u0<.5) return y; return -y;
| ^~
rand.hh:382:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
382 | if(u0<.5) return y; return -y;
| ^~~~~~
rand.hh:389:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
389 | if(u0<.5) return y; return -y;
| ^~
rand.hh:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
389 | if(u0<.5) return y; return -y;
| ^~~~~~
BGmix_main.cpp: In function ‘void BGmix(int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double*, double*, double*, int*, int&, double*, int*, char**, char**, char**, char**, char**)’:
BGmix_main.cpp:145:1: error: reference to ‘beta’ is ambiguous
145 | beta = new double*[ngenes];
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:146:29: error: reference to ‘beta’ is ambiguous
146 | for(int i=0; i<ngenes; ++i) beta[i] = new double[neffects];
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:165:17: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
165 | if(neffects==2 & nconds==2){
| ~~~~~~~~^~~
BGmix_main.cpp:166:8: error: reference to ‘beta’ is ambiguous
166 | beta[i][0] = xx[1][1]*ybar[i][0] - xx[1][0]*ybar[i][1];
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:167:8: error: reference to ‘beta’ is ambiguous
167 | beta[i][1] = xx[0][0]*ybar[i][1] - xx[0][1]*ybar[i][0];
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:169:11: error: reference to ‘beta’ is ambiguous
169 | else beta[i][j] = beta_init;
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:178:12: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
178 | if(jstar!=-1 & ncomps==3){
| ~~~~~^~~~
BGmix_main.cpp:179:9: error: reference to ‘beta’ is ambiguous
179 | if(beta[i][jstar]<0.01 & beta[i][jstar]>-0.01) zg[i]=1;
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:179:31: error: reference to ‘beta’ is ambiguous
179 | if(beta[i][jstar]<0.01 & beta[i][jstar]>-0.01) zg[i]=1;
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:180:14: error: reference to ‘beta’ is ambiguous
180 | else if(beta[i][jstar]>0) zg[i]=2;
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:507:22: error: reference to ‘beta’ is ambiguous
507 | update_beta0(beta, tau, gamma1, xx, indtau, ybar, ydata, like_choice,
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:512:45: error: reference to ‘beta’ is ambiguous
512 | if(move_choice_cut==1) update_tau(beta, tau, gamma1, xx, indtau, ybar, ss, ydata,
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:522:30: error: reference to ‘beta’ is ambiguous
522 | update_tau_logNorm(beta, tau, gamma1, xx, indtau, ybar, ss, ydata,
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:529:41: error: reference to ‘beta’ is ambiguous
529 | if(like_choice==2) update_gamma(beta, tau, gamma1, xx, indtau, ydata, df,
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:536:53: error: reference to ‘beta’ is ambiguous
536 | eta_up, eta_down, beta, tau, gamma1, xx, indtau, ybar, ydata, like_choice,
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:541:39: error: reference to ‘beta’ is ambiguous
541 | update_z_beta1_joint2(zg, beta, nalloc, n_acc, n_try,
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:546:33: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
546 | else if(move_choice_bz==3 | move_choice_bz==4){
| ~~~~~~~~~~~~~~^~~
BGmix_main.cpp:547:39: error: reference to ‘beta’ is ambiguous
547 | update_z_beta1_joint3(zg, beta, nalloc, n_acc, n_try, wtc, eta_up, eta_down,
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:551:51: error: reference to ‘beta’ is ambiguous
551 | zg, beta, nalloc, ngenes, nconds, jstar, rand);
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:553:72: error: reference to ‘beta’ is ambiguous
553 | lam1, lam2, nlam, zg, beta, nalloc, ngenes, jstar, rand);
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:556:39: error: reference to ‘beta’ is ambiguous
556 | update_z_beta1_joint4(zg, beta, nalloc, n_acc, n_try, wtc, tau_eps, eta_up, eta_down,
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:560:51: error: reference to ‘beta’ is ambiguous
560 | zg, beta, nalloc, ngenes, nconds, jstar, rand);
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:562:72: error: reference to ‘beta’ is ambiguous
562 | lam1, lam2, nlam, zg, beta, nalloc, ngenes, jstar, rand);
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:583:22: error: reference to ‘beta’ is ambiguous
583 | update_beta0(beta, tau, gamma1, xx, indtau, ybar, ydata, like_choice,
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:588:45: error: reference to ‘beta’ is ambiguous
588 | if(move_choice_cut==1) update_tau(beta, tau, gamma1, xx, indtau, ybar, ss, ydata,
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:597:30: error: reference to ‘beta’ is ambiguous
597 | update_tau_logNorm(beta, tau, gamma1, xx, indtau, ybar, ss, ydata,
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:605:41: error: reference to ‘beta’ is ambiguous
605 | if(like_choice==2) update_gamma(beta, tau, gamma1, xx, indtau, ydata, df,
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:611:53: error: reference to ‘beta’ is ambiguous
611 | eta_up, eta_down, beta, tau, gamma1, xx, indtau, ybar, ydata, like_choice,
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:616:39: error: reference to ‘beta’ is ambiguous
616 | update_z_beta1_joint2(zg, beta, nalloc, n_acc, n_try,
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:621:33: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
621 | else if(move_choice_bz==3 | move_choice_bz==4){
| ~~~~~~~~~~~~~~^~~
BGmix_main.cpp:622:39: error: reference to ‘beta’ is ambiguous
622 | update_z_beta1_joint3(zg, beta, nalloc, n_acc, n_try, wtc, eta_up, eta_down,
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:626:51: error: reference to ‘beta’ is ambiguous
626 | zg, beta, nalloc, ngenes, nconds, jstar, rand);
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:628:72: error: reference to ‘beta’ is ambiguous
628 | lam1, lam2, nlam, zg, beta, nalloc, ngenes, jstar, rand);
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:631:39: error: reference to ‘beta’ is ambiguous
631 | update_z_beta1_joint4(zg, beta, nalloc, n_acc, n_try, wtc, tau_eps, eta_up, eta_down,
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:635:51: error: reference to ‘beta’ is ambiguous
635 | zg, beta, nalloc, ngenes, nconds, jstar, rand);
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:637:72: error: reference to ‘beta’ is ambiguous
637 | lam1, lam2, nlam, zg, beta, nalloc, ngenes, jstar, rand);
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:647:50: error: reference to ‘beta’ is ambiguous
647 | ybar, ss, tau, gamma1, aa, bb, zg, beta, xx, indtau, wtc, tau_eps, eta_up, eta_down,
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:653:54: error: reference to ‘beta’ is ambiguous
653 | ybar, ss, tau, gamma1, df, aa, bb, zg, beta, xx, indtau, wtc, tau_eps, eta_up, eta_down,
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:656:47: error: reference to ‘beta’ is ambiguous
656 | deviance_calc(deviance1, deviance2, beta, tau, gamma1, xx, indtau, ybar, ss, ydata,
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:670:44: error: reference to ‘beta’ is ambiguous
670 | mean_beta[i][j] += beta[i][j];
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:705:36: error: reference to ‘beta’ is ambiguous
705 | beta_file << beta[i][j] << " ";
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp: In function ‘void freeBGmixMemory(int&, int&)’:
BGmix_main.cpp:967:41: error: reference to ‘beta’ is ambiguous
967 | for(int i=0; i<ngenes; ++i) delete [] beta[i];
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp:968:13: error: reference to ‘beta’ is ambiguous
968 | delete [] beta;
| ^~~~
In file included from /usr/include/c++/11/cmath:1935,
from /usr/include/c++/11/valarray:37,
from rand.hh:24,
from updates_BGmix.h:1,
from BGmix_main.cpp:25:
/usr/include/c++/11/bits/specfun.h:343:5: note: candidates are: ‘template<class _Tpa, class _Tpb> typename __gnu_cxx::__promote_2<_Tp, _Up>::__type std::beta(_Tpa, _Tpb)’
343 | beta(_Tpa __a, _Tpb __b)
| ^~~~
BGmix_main.cpp:76:40: note: ‘double** beta’
76 | static double **ybar, **ss, **ydata, **beta, **tau, **gamma1,
| ^~~~
BGmix_main.cpp: At global scope:
BGmix_main.cpp:76:40: warning: ‘beta’ defined but not used [-Wunused-variable]
make: *** [Makevars:9: BGmix_main.o] Error 1
ERROR: compilation failed for package ‘BGmix’
* removing ‘/tmp/RtmpKlP1nt/Rinst39bbb04a8fc07e/BGmix’
-----------------------------------
ERROR: package installation failed