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This page was generated on 2023-04-19 11:01:58 -0400 (Wed, 19 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnsonmacOS 13.0 Venturaarm644.2.2 (2022-10-31) -- "Innocent and Trusting" 4256
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INSTALL results for seqbias on kjohnson


To the developers/maintainers of the seqbias package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1841/2183HostnameOS / ArchINSTALLBUILDBUILD BIN
seqbias 1.46.0  (landing page)
Daniel Jones
Snapshot Date: 2023-04-12 13:00:02 -0400 (Wed, 12 Apr 2023)
git_url: https://git.bioconductor.org/packages/seqbias
git_branch: RELEASE_3_16
git_last_commit: d15d8fa
git_last_commit_date: 2022-11-01 11:05:31 -0400 (Tue, 01 Nov 2022)
kjohnsonmacOS 13.0 Ventura / arm64  ERROR    ERROR  skipped

Summary

Package: seqbias
Version: 1.46.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL seqbias
StartedAt: 2023-04-16 14:25:42 -0400 (Sun, 16 Apr 2023)
EndedAt: 2023-04-16 14:25:47 -0400 (Sun, 16 Apr 2023)
EllapsedTime: 4.4 seconds
RetCode: 1
Status:   ERROR  

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL seqbias
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library’
* installing *source* package ‘seqbias’ ...
** using staged installation
** libs
$SEQBIAS_OBJ is [common.o miscmath.o pos_table.o kmer_matrix.o logger.o motif.o seqbias.o sequencing_bias.o twobitseq.o]
$YAML_CPP_OBJ is [aliasmanager.o conversion.o directives.o emitfromevents.o emitter.o emitterstate.o emitterutils.o exp.o iterator.o nodebuilder.o node.o nodeownership.o null.o ostream.o parser.o regex.o scanner.o scanscalar.o scantag.o scantoken.o simplekey.o singledocparser.o stream.o tag.o]
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rhtslib/include' -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/zlibbioc/include' -I/opt/R/arm64/include  -Wall -Wextra -I. -fPIC  -falign-functions=64 -Wall -g -O2  -c common.c -o common.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rhtslib/include' -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/zlibbioc/include' -I/opt/R/arm64/include  -Wall -Wextra -I. -fPIC  -falign-functions=64 -Wall -g -O2  -c miscmath.c -o miscmath.o
miscmath.c:21:12: error: implicitly declaring library function 'finite' with type 'int (double)' [-Werror,-Wimplicit-function-declaration]
    return finite(a) && 0.0 <= a && a <= 1.0;
           ^
miscmath.c:21:12: note: include the header <math.h> or explicitly provide a declaration for 'finite'
1 error generated.
make: *** [miscmath.o] Error 1
ERROR: compilation failed for package ‘seqbias’
* removing ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/seqbias’