Back to Mac ARM64 build report for BioC 3.16
ABCDEFGHIJKLMN[O]PQRSTUVWXYZ

This page was generated on 2023-04-19 11:01:56 -0400 (Wed, 19 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnsonmacOS 13.0 Venturaarm644.2.2 (2022-10-31) -- "Innocent and Trusting" 4256
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for openCyto on kjohnson


To the developers/maintainers of the openCyto package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1402/2183HostnameOS / ArchINSTALLBUILDBUILD BIN
openCyto 2.10.1  (landing page)
Mike Jiang
Snapshot Date: 2023-04-12 13:00:02 -0400 (Wed, 12 Apr 2023)
git_url: https://git.bioconductor.org/packages/openCyto
git_branch: RELEASE_3_16
git_last_commit: ad6b183
git_last_commit_date: 2022-12-01 23:09:44 -0400 (Thu, 01 Dec 2022)
kjohnsonmacOS 13.0 Ventura / arm64  OK    ERROR  skipped

Summary

Package: openCyto
Version: 2.10.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data openCyto
StartedAt: 2023-04-17 19:45:12 -0400 (Mon, 17 Apr 2023)
EndedAt: 2023-04-17 19:46:16 -0400 (Mon, 17 Apr 2023)
EllapsedTime: 64.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data openCyto
###
##############################################################################
##############################################################################


* checking for file ‘openCyto/DESCRIPTION’ ... OK
* preparing ‘openCyto’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘HowToAutoGating.Rmd’ using rmarkdown
--- finished re-building ‘HowToAutoGating.Rmd’

--- re-building ‘HowToWriteCSVTemplate.Rmd’ using rmarkdown
--- finished re-building ‘HowToWriteCSVTemplate.Rmd’

--- re-building ‘openCytoVignette.Rmd’ using knitr
Quitting from lines 69-71 (openCytoVignette.Rmd) 
Error: processing vignette 'openCytoVignette.Rmd' failed with diagnostics:
Metric information not available for this family/device
--- failed re-building ‘openCytoVignette.Rmd’

SUMMARY: processing the following file failed:
  ‘openCytoVignette.Rmd’

Error: Vignette re-building failed.
Execution halted