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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL mitoClone2
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library’
* installing *source* package ‘mitoClone2’ ...
** using staged installation
** libs
clang++ -arch arm64 -std=gnu++14 -D_FILE_OFFSET_BITS=64 ../inst/SCITEpkg/*.cpp -o scite
../inst/SCITEpkg/mcmcBinTreeMove.cpp:75:1: warning: non-void function does not return a value in all control paths [-Wreturn-type]
}
^
1 warning generated.
mkdir -p "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/00LOCK-mitoClone2/00new/mitoClone2/SCITE/"
cp scite "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/00LOCK-mitoClone2/00new/mitoClone2/SCITE/"
rm scite
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rhtslib/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c bam2R_10x.cpp -o bam2R_10x.o
bam2R_10x.cpp:6:2: warning: '/*' within block comment [-Wcomment]
 /**************************************************************************************
 ^
bam2R_10x.cpp:8:1: warning: '/*' within block comment [-Wcomment]
/**********************************************************************
^
bam2R_10x.cpp:75:10: warning: unused variable 'bc_absent' [-Wunused-variable]
            int bc_absent;
                ^
bam2R_10x.cpp:224:7: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
      sprintf(region,"%s:%d-%d",ref,nttable.beg,nttable.end);
      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48: note: expanded from macro '__deprecated_msg'
        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
                                                      ^
bam2R_10x.cpp:161:9: warning: unused variable 'c' [-Wunused-variable]
    int c = 0;
        ^
bam2R_10x.cpp:158:16: warning: unused variable 'iter' [-Wunused-variable]
    hts_itr_t *iter = NULL;
               ^
6 warnings generated.
clang++ -arch arm64 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o mitoClone2.so bam2R_10x.o /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rhtslib/usrlib/libhts.a -lcurl -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: -undefined dynamic_lookup may not work with chained fixups
installing to /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/00LOCK-mitoClone2/00new/mitoClone2/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mitoClone2)