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This page was generated on 2023-04-19 11:01:59 -0400 (Wed, 19 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnsonmacOS 13.0 Venturaarm644.2.2 (2022-10-31) -- "Innocent and Trusting" 4256
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BUILD BIN results for VanillaICE on kjohnson


To the developers/maintainers of the VanillaICE package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 2130/2183HostnameOS / ArchINSTALLBUILDBUILD BIN
VanillaICE 1.60.0  (landing page)
Robert Scharpf
Snapshot Date: 2023-04-12 13:00:02 -0400 (Wed, 12 Apr 2023)
git_url: https://git.bioconductor.org/packages/VanillaICE
git_branch: RELEASE_3_16
git_last_commit: e9df26b
git_last_commit_date: 2022-11-01 11:03:36 -0400 (Tue, 01 Nov 2022)
kjohnsonmacOS 13.0 Ventura / arm64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: VanillaICE
Version: 1.60.0
Command: rm -rf VanillaICE.buildbin-libdir && mkdir VanillaICE.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh VanillaICE_1.60.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R VanillaICE.buildbin-libdir
StartedAt: 2023-04-18 20:22:00 -0400 (Tue, 18 Apr 2023)
EndedAt: 2023-04-18 20:23:02 -0400 (Tue, 18 Apr 2023)
EllapsedTime: 62.5 seconds
RetCode: 0
Status:   OK  
PackageFile: VanillaICE_1.60.0.tgz
PackageFileSize: 3.036 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf VanillaICE.buildbin-libdir && mkdir VanillaICE.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh VanillaICE_1.60.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R VanillaICE.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=VanillaICE.buildbin-libdir VanillaICE_1.60.0.tar.gz'
>>>>>>> 

* installing *source* package ‘VanillaICE’ ...
** using staged installation
** libs
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c rinit.c -o rinit.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c viterbi.c -o viterbi.o
clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o VanillaICE.so rinit.o viterbi.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: -undefined dynamic_lookup may not work with chained fixups
installing to /Volumes/External/bbs-3.16-bioc-m1/meat/VanillaICE.buildbin-libdir/00LOCK-VanillaICE/00new/VanillaICE/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
No methods found in package ‘oligoClasses’ for request: ‘mean’ when loading ‘crlmm’
Creating a new generic function for ‘distance’ in package ‘VanillaICE’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package ‘oligoClasses’ for request: ‘mean’ when loading ‘crlmm’
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
No methods found in package ‘oligoClasses’ for request: ‘mean’ when loading ‘crlmm’
** testing if installed package keeps a record of temporary installation path
* DONE (VanillaICE)


>>>>>>> 
>>>>>>> FIXING LINKS FOR VanillaICE.buildbin-libdir/VanillaICE/libs/VanillaICE.so
>>>>>>> 

install_name_tool -change "/opt/R/arm64/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libgcc_s.1.1.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/VanillaICE.so"
install_name_tool -change "/opt/R/arm64/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libgfortran.5.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/VanillaICE.so"
install_name_tool -change "/opt/R/arm64/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libquadmath.0.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs/VanillaICE.so"