Back to Long Tests report for BioC 3.16

This page was generated on 2023-04-15 21:30:02 -0400 (Sat, 15 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4282
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4310
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for biodbNcbi on nebbiolo2


To the developers/maintainers of the biodbNcbi package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 11/28HostnameOS / ArchCHECK
biodbNcbi 1.2.0  (landing page)
Pierrick Roger
Snapshot Date: 2023-04-15 06:55:01 -0400 (Sat, 15 Apr 2023)
git_url: https://git.bioconductor.org/packages/biodbNcbi
git_branch: RELEASE_3_16
git_last_commit: 987e49c
git_last_commit_date: 2022-11-01 11:26:40 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  WARNINGS  
palomino4Windows Server 2022 Datacenter / x64  WARNINGS  
lconwaymacOS 12.5.1 Monterey / x86_64  WARNINGS  

Summary

Package: biodbNcbi
Version: 1.2.0
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.2.0.tar.gz
StartedAt: 2023-04-15 08:07:25 -0400 (Sat, 15 Apr 2023)
EndedAt: 2023-04-15 08:09:05 -0400 (Sat, 15 Apr 2023)
EllapsedTime: 100.1 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbNcbi.Rcheck
Warnings: 1

Tests output

biodbNcbi.Rcheck/tests/testthat.Rout


R version 4.2.3 (2023-03-15) -- "Shortstop Beagle"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbNci)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbNcbi")
Loading required package: biodbNcbi
biodb.INFO [2023-04-15 08:07:58.915][biodb::testContext]
biodb.INFO [2023-04-15 08:07:58.916][biodb::testContext] ********************************************************************************
biodb.INFO [2023-04-15 08:07:58.917][biodb::testContext] Test context - CCDS long tests
biodb.INFO [2023-04-15 08:07:58.918][biodb::testContext] ********************************************************************************
biodb.INFO [2023-04-15 08:07:58.918][biodb::testContext]
biodb.INFO [2023-04-15 08:07:58.923][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.6.1.
biodb.DEBUG[2023-04-15 08:07:58.924][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.16-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2023-04-15 08:07:58.929][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-15 08:07:58.930][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-04-15 08:07:58.931][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-04-15 08:07:58.932][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:58.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:58.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:58.934][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-04-15 08:07:58.946][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-04-15 08:07:58.947][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:58.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:58.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:58.949][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-04-15 08:07:58.949][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-04-15 08:07:58.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:58.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:58.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:58.952][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-04-15 08:07:58.953][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-04-15 08:07:58.953][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-04-15 08:07:58.954][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:58.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:58.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:58.956][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-04-15 08:07:58.957][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-04-15 08:07:58.957][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-04-15 08:07:58.958][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:58.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:58.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:58.960][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-04-15 08:07:58.961][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-04-15 08:07:58.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:58.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:58.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:58.963][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-04-15 08:07:58.964][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-04-15 08:07:58.964][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-04-15 08:07:58.965][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:58.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:58.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:58.967][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-04-15 08:07:58.968][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-04-15 08:07:58.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:58.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:58.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:58.970][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-04-15 08:07:58.971][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-04-15 08:07:58.972][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-04-15 08:07:58.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:58.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:58.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:58.974][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-04-15 08:07:58.975][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-04-15 08:07:58.976][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-04-15 08:07:58.976][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-04-15 08:07:58.977][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-04-15 08:07:58.978][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-04-15 08:07:58.978][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:58.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:58.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:58.980][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-04-15 08:07:58.981][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-04-15 08:07:58.981][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:58.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:58.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:58.983][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-04-15 08:07:58.984][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-04-15 08:07:58.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:58.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:58.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:58.987][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-04-15 08:07:58.987][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-04-15 08:07:58.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:58.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:58.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:58.990][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-04-15 08:07:58.990][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-04-15 08:07:58.991][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:58.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:58.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:58.993][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-04-15 08:07:58.994][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-04-15 08:07:58.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:58.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:58.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:58.996][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-04-15 08:07:58.997][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-04-15 08:07:59.002][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-04-15 08:07:59.002][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.004][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-04-15 08:07:59.005][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-04-15 08:07:59.006][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-04-15 08:07:59.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.010][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-04-15 08:07:59.039][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:07:59.049][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-04-15 08:07:59.050][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.051][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:07:59.052][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.053][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:07:59.053][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:07:59.054][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:07:59.055][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-04-15 08:07:59.055][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:07:59.056][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.057][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-04-15 08:07:59.057][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:07:59.058][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:07:59.059][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.060][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:07:59.060][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-15 08:07:59.060][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-15 08:07:59.060][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-04-15 08:07:59.060][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-04-15 08:07:59.060][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:07:59.061][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:07:59.062][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:07:59.062][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:07:59.063][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:07:59.064][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:07:59.064][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:07:59.065][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:07:59.066][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:07:59.066][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:07:59.067][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:07:59.068][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:07:59.068][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-04-15 08:07:59.070][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:07:59.070][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-04-15 08:07:59.071][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.072][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:07:59.073][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.073][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:07:59.074][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:07:59.075][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:07:59.075][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-04-15 08:07:59.076][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:07:59.077][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.077][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-04-15 08:07:59.078][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:07:59.079][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:07:59.079][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.080][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:07:59.080][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-15 08:07:59.080][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-15 08:07:59.080][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-04-15 08:07:59.080][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-04-15 08:07:59.081][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:07:59.082][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:07:59.082][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:07:59.083][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:07:59.084][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:07:59.084][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:07:59.085][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:07:59.086][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:07:59.086][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:07:59.087][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:07:59.088][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:07:59.088][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:07:59.089][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-04-15 08:07:59.090][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.091][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-04-15 08:07:59.092][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.092][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:07:59.093][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.094][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:07:59.094][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:07:59.095][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:07:59.096][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-04-15 08:07:59.097][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:07:59.097][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:07:59.098][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-04-15 08:07:59.099][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:07:59.099][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:07:59.100][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.101][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:07:59.101][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:07:59.102][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:07:59.103][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:07:59.103][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:07:59.104][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:07:59.105][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:07:59.105][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:07:59.106][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:07:59.107][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:07:59.107][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:07:59.108][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:07:59.109][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:07:59.109][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-04-15 08:07:59.111][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.111][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-04-15 08:07:59.112][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.113][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:07:59.113][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.114][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:07:59.115][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:07:59.115][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:07:59.116][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-04-15 08:07:59.117][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:07:59.117][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:07:59.118][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-04-15 08:07:59.119][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:07:59.119][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:07:59.120][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.121][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:07:59.122][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:07:59.122][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:07:59.123][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:07:59.123][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:07:59.124][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:07:59.125][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:07:59.125][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:07:59.126][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:07:59.127][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:07:59.127][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:07:59.128][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:07:59.129][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:07:59.132][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-15 08:07:59.132][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.133][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.137][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.143][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.146][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.149][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.152][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.155][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.159][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.165][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.168][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.171][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.177][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.180][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.190][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-04-15 08:07:59.193][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-04-15 08:07:59.194][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-04-15 08:07:59.196][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-04-15 08:07:59.197][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-04-15 08:07:59.197][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-04-15 08:07:59.198][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-04-15 08:07:59.199][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-04-15 08:07:59.200][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-04-15 08:07:59.201][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-04-15 08:07:59.202][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-04-15 08:07:59.203][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-04-15 08:07:59.204][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-04-15 08:07:59.205][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-04-15 08:07:59.206][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-04-15 08:07:59.207][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-04-15 08:07:59.208][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-04-15 08:07:59.209][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-04-15 08:07:59.210][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-04-15 08:07:59.211][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-04-15 08:07:59.212][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-04-15 08:07:59.213][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-04-15 08:07:59.214][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-04-15 08:07:59.215][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-04-15 08:07:59.216][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-04-15 08:07:59.217][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-04-15 08:07:59.218][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-04-15 08:07:59.219][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-04-15 08:07:59.220][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-04-15 08:07:59.221][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-04-15 08:07:59.222][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-04-15 08:07:59.223][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-04-15 08:07:59.224][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-04-15 08:07:59.225][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-04-15 08:07:59.226][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-04-15 08:07:59.227][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-04-15 08:07:59.228][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-04-15 08:07:59.229][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-04-15 08:07:59.230][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-04-15 08:07:59.231][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-04-15 08:07:59.232][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-04-15 08:07:59.233][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-04-15 08:07:59.234][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-04-15 08:07:59.234][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-04-15 08:07:59.235][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-04-15 08:07:59.236][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-04-15 08:07:59.237][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-04-15 08:07:59.238][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-04-15 08:07:59.239][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-04-15 08:07:59.240][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-04-15 08:07:59.241][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-04-15 08:07:59.242][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-04-15 08:07:59.243][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-04-15 08:07:59.244][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-04-15 08:07:59.245][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-04-15 08:07:59.246][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-04-15 08:07:59.247][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-04-15 08:07:59.248][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-04-15 08:07:59.249][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-04-15 08:07:59.254][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-04-15 08:07:59.255][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-04-15 08:07:59.256][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-04-15 08:07:59.257][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-04-15 08:07:59.257][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-04-15 08:07:59.258][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-04-15 08:07:59.259][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-04-15 08:07:59.260][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-04-15 08:07:59.261][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-04-15 08:07:59.262][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-04-15 08:07:59.263][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-04-15 08:07:59.264][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-04-15 08:07:59.265][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-04-15 08:07:59.266][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-04-15 08:07:59.267][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-04-15 08:07:59.268][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-04-15 08:07:59.269][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-04-15 08:07:59.270][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-04-15 08:07:59.271][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-04-15 08:07:59.272][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-04-15 08:07:59.273][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-04-15 08:07:59.274][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-04-15 08:07:59.275][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-04-15 08:07:59.276][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-04-15 08:07:59.281][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-04-15 08:07:59.282][initialize] This is biodb version 1.6.1.
biodb.DEBUG[2023-04-15 08:07:59.284][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-15 08:07:59.285][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.286][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:07:59.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:07:59.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:07:59.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:07:59.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:07:59.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:07:59.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.303][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:07:59.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:07:59.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.307][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:07:59.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:07:59.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.312][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:07:59.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:07:59.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.316][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:07:59.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:07:59.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.320][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:07:59.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:07:59.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.325][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:07:59.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:07:59.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:07:59.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:07:59.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.333][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:07:59.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:07:59.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:07:59.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:07:59.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.342][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:07:59.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:07:59.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:07:59.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:07:59.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:07:59.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:07:59.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.355][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:07:59.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:07:59.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.359][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:07:59.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:07:59.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:07:59.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:07:59.388][bdb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2023-04-15 08:07:59.394][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2023-04-15 08:07:59.395][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.396][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2023-04-15 08:07:59.397][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.397][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:07:59.398][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.399][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:07:59.400][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.400][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:07:59.401][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2023-04-15 08:07:59.402][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:07:59.402][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.403][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2023-04-15 08:07:59.404][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:07:59.404][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2023-04-15 08:07:59.404][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2023-04-15 08:07:59.405][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:07:59.406][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:07:59.407][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-04-15 08:07:59.407][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:07:59.408][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:07:59.409][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:07:59.409][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:07:59.410][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:07:59.411][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:07:59.411][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-04-15 08:07:59.411][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2023-04-15 08:07:59.412][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:07:59.412][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:07:59.413][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.414][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:07:59.415][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2023-04-15 08:07:59.416][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.417][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2023-04-15 08:07:59.417][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.418][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:07:59.419][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.419][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:07:59.420][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.421][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:07:59.421][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-15 08:07:59.422][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:07:59.423][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.424][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2023-04-15 08:07:59.424][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:07:59.425][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2023-04-15 08:07:59.425][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2023-04-15 08:07:59.425][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2023-04-15 08:07:59.425][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2023-04-15 08:07:59.425][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2023-04-15 08:07:59.425][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2023-04-15 08:07:59.426][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:07:59.426][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:07:59.427][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-04-15 08:07:59.428][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:07:59.428][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:07:59.429][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:07:59.430][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:07:59.430][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:07:59.431][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:07:59.432][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:07:59.432][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-04-15 08:07:59.432][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:07:59.433][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:07:59.434][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.434][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:07:59.435][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2023-04-15 08:07:59.437][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:07:59.437][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2023-04-15 08:07:59.438][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.439][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:07:59.439][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.440][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:07:59.441][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.441][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:07:59.442][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-15 08:07:59.443][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:07:59.444][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.444][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2023-04-15 08:07:59.445][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:07:59.446][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2023-04-15 08:07:59.446][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:07:59.446][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:07:59.446][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:07:59.446][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:07:59.446][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:07:59.446][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:07:59.446][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:07:59.446][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:07:59.446][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:07:59.446][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2023-04-15 08:07:59.446][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:07:59.446][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:07:59.446][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:07:59.446][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:07:59.447][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:07:59.447][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-15 08:07:59.447][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-15 08:07:59.448][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2023-04-15 08:07:59.449][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:07:59.449][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:07:59.450][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:07:59.450][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:07:59.451][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:07:59.452][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:07:59.452][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:07:59.452][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-04-15 08:07:59.452][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2023-04-15 08:07:59.453][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:07:59.454][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:07:59.454][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.455][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-04-15 08:07:59.456][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2023-04-15 08:07:59.457][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.458][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2023-04-15 08:07:59.459][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.459][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:07:59.460][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.461][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:07:59.461][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.462][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:07:59.463][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-15 08:07:59.464][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:07:59.464][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.465][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2023-04-15 08:07:59.466][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:07:59.466][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2023-04-15 08:07:59.466][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2023-04-15 08:07:59.467][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:07:59.468][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:07:59.468][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2023-04-15 08:07:59.469][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:07:59.470][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:07:59.470][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:07:59.471][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:07:59.472][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:07:59.472][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:07:59.473][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:07:59.473][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-04-15 08:07:59.473][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2023-04-15 08:07:59.474][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:07:59.474][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:07:59.475][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:07:59.476][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-04-15 08:07:59.480][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2023-04-15 08:07:59.481][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-04-15 08:07:59.482][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-04-15 08:07:59.483][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2023-04-15 08:07:59.484][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-04-15 08:07:59.485][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2023-04-15 08:07:59.505][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2023-04-15 08:07:59.506][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2023-04-15 08:07:59.509][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2023-04-15 08:07:59.512][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2023-04-15 08:07:59.515][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:07:59.516][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:07:59.517][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2023-04-15 08:07:59.518][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:07:59.518][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:07:59.519][bdb$getFactory()$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.INFO [2023-04-15 08:07:59.525][biodb::testThat]
biodb.INFO [2023-04-15 08:07:59.526][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2023-04-15 08:07:59.527][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:07:59.527][biodb::testThat]
biodb.TRACE[2023-04-15 08:07:59.530][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS12227.1-content.html".
biodb.DEBUG[2023-04-15 08:07:59.532][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:07:59.534][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2023-04-15 08:07:59.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:07:59.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:07:59.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:07:59.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:07:59.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.577][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:07:59.590][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:07:59.591][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.592][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.613][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:07:59.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:07:59.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:07:59.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:07:59.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:07:59.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:07:59.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:07:59.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:07:59.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:07:59.687][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS12227.1.
biodb.TRACE[2023-04-15 08:07:59.689][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:07:59.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:07:59.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.692][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:07:59.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:07:59.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.709][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:07:59.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:07:59.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.712][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:07:59.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:07:59.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.715][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:07:59.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:07:59.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.721][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:07:59.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:07:59.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:07:59.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:07:59.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:07:59.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:07:59.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.773][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:07:59.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:07:59.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:07:59.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:07:59.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.791][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.792][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.793][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.793][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.802][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:07:59.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:07:59.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.804][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:07:59.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:07:59.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.807][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:07:59.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:07:59.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.814][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:07:59.815][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:07:59.815][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.816][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.817][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:07:59.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:07:59.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.824][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:07:59.825][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:07:59.826][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.826][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.830][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.831][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.831][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.832][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.844][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS43240.1-content.html".
biodb.DEBUG[2023-04-15 08:07:59.867][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:07:59.868][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2023-04-15 08:07:59.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:07:59.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:07:59.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:07:59.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:07:59.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:07:59.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:07:59.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:07:59.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.902][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:07:59.903][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:07:59.903][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.904][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.905][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:07:59.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:07:59.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.908][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:07:59.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:07:59.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.911][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:07:59.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:07:59.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.916][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:07:59.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:07:59.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:07:59.936][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS43240.1.
biodb.TRACE[2023-04-15 08:07:59.950][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:07:59.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:07:59.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.952][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:07:59.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:07:59.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.955][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:07:59.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:07:59.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.958][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:07:59.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:07:59.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.961][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:07:59.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:07:59.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.963][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:07:59.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:07:59.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:07:59.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:07:59.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:07:59.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:07:59.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:07:59.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:07:59.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:00.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:00.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:00.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:00.002][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:00.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:00.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:00.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:00.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:00.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:00.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:00.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:00.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:00.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:00.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:00.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:00.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:00.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:00.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:00.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:00.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:00.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:00.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:00.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:00.027][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:00.027][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:00.028][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:00.029][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:00.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:00.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:00.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:00.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:00.037][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:00.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:00.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:00.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:00.040][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:00.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:00.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:00.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:00.042][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:00.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:00.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:00.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:00.045][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:00.046][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:00.046][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:00.047][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:00.048][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:00.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:00.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:00.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:00.058][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:00.059][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:00.060][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:00.061][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:00.064][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:00.065][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:00.066][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:00.066][ef$get] fields variable is a list.
biodb.INFO [2023-04-15 08:08:00.071][biodb::testThat]
biodb.INFO [2023-04-15 08:08:00.071][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2023-04-15 08:08:00.072][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:00.073][biodb::testThat]
biodb.DEBUG[2023-04-15 08:08:00.074][private$loadEntries] Creating entries from ids [2]: "CCDS12227.1, CCDS43240.1".
biodb.DEBUG[2023-04-15 08:08:00.080][conn$getEntryContent] Get NCBI CCDS entry content(s) for 2 id(s)...
biodb.TRACE[2023-04-15 08:08:00.082][cch$loadFileContent] Trying to load 2 files from cache: [2]: "CCDS12227.1, CCDS43240.1".
biodb.TRACE[2023-04-15 08:08:00.083][cch$loadFileContent] file.exist = [2]: "FALSE, TRUE".
biodb.TRACE[2023-04-15 08:08:00.085][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2023-04-15 08:08:00.086][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:08:00.086][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-04-15 08:08:00.087][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:08:00.088][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-04-15 08:08:00.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:00.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:00.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:00.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:00.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:00.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:00.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:00.099][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2023-04-15 08:08:00.113][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:08:00.114][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:08:00.115][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.TRACE[2023-04-15 08:08:01.463][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1).
biodb.DEBUG[2023-04-15 08:08:02.952][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:08:02.954][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.content"
biodb.TRACE[2023-04-15 08:08:02.964][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.request"
biodb.TRACE[2023-04-15 08:08:02.973][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS12227.1.html"
biodb.DEBUG[2023-04-15 08:08:02.974][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:08:02.975][self$createEntryFromContent] Creating NCBI CCDS entries from 2 content(s).
biodb.DEBUG[2023-04-15 08:08:02.976][self$createEntryFromContent] Parsing 2 NCBI CCDS entries.
biodb.DEBUG[2023-04-15 08:08:02.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:02.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:02.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:02.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:02.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:02.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:02.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:02.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:02.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:03.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.001][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:03.002][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:03.002][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.003][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.004][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:03.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:03.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:03.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:03.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:03.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:03.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:03.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:03.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:03.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:03.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:03.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:03.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:03.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:03.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:03.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:03.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:03.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:03.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:03.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:03.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:03.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:03.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:03.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:03.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:03.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:03.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.050][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:03.050][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:03.051][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.052][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.053][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:03.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:03.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:03.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:03.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:03.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:03.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:03.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:03.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.064][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:03.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:03.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:03.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:03.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:03.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:03.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:03.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:03.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:03.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:03.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:03.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:03.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:03.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:03.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:03.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:03.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:03.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:03.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:03.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:03.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:03.092][self$createEntryFromContent] Accession numbers: CCDS12227.1, CCDS43240.1.
biodb.TRACE[2023-04-15 08:08:03.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-04-15 08:08:03.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-04-15 08:08:03.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:08:03.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:08:03.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:08:03.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:08:03.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-04-15 08:08:03.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-04-15 08:08:03.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:08:03.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:08:03.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:08:03.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:08:03.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-15 08:08:03.120][biodb::testThat]
biodb.INFO [2023-04-15 08:08:03.121][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2023-04-15 08:08:03.122][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:03.122][biodb::testThat]
biodb.INFO [2023-04-15 08:08:03.125][biodb::testThat]
biodb.INFO [2023-04-15 08:08:03.126][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2023-04-15 08:08:03.126][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:03.127][biodb::testThat]
biodb.WARN [2023-04-15 08:08:03.145][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2023-04-15 08:08:03.159][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2023-04-15 08:08:03.164][biodb::testThat]
biodb.INFO [2023-04-15 08:08:03.165][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2023-04-15 08:08:03.166][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:03.166][biodb::testThat]
biodb.TRACE[2023-04-15 08:08:03.186][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:03.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:03.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.189][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:03.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:03.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.192][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:03.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:03.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.195][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:03.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:03.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.198][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:03.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:03.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.201][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:03.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:03.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.210][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:03.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:03.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.213][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:03.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:03.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.215][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:03.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:03.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.218][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:03.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:03.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.221][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:03.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:03.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:03.224][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:03.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:03.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:03.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-15 08:08:03.228][biodb::testThat]
biodb.INFO [2023-04-15 08:08:03.229][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2023-04-15 08:08:03.230][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:03.230][biodb::testThat]
biodb.INFO [2023-04-15 08:08:03.238][biodb::testThat]
biodb.INFO [2023-04-15 08:08:03.239][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2023-04-15 08:08:03.239][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:03.240][biodb::testThat]
biodb.INFO [2023-04-15 08:08:03.243][biodb::testThat]
biodb.INFO [2023-04-15 08:08:03.244][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2023-04-15 08:08:03.244][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:03.245][biodb::testThat]
biodb.DEBUG[2023-04-15 08:08:03.248][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2023-04-15 08:08:04.575][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1.
biodb.INFO [2023-04-15 08:08:05.790][biodb::testThat]
biodb.INFO [2023-04-15 08:08:05.791][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2023-04-15 08:08:05.791][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:05.792][biodb::testThat]
biodb.INFO [2023-04-15 08:08:05.795][bdb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-04-15 08:08:05.795][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2023-04-15 08:08:05.796][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2023-04-15 08:08:05.797][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-04-15 08:08:05.798][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:05.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:05.799][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:05.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:05.800][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:05.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-04-15 08:08:05.808][biodb::testContext]
biodb.INFO [2023-04-15 08:08:05.808][biodb::testContext] ********************************************************************************
biodb.INFO [2023-04-15 08:08:05.809][biodb::testContext] Test context - Gene long tests
biodb.INFO [2023-04-15 08:08:05.810][biodb::testContext] ********************************************************************************
biodb.INFO [2023-04-15 08:08:05.810][biodb::testContext]
biodb.INFO [2023-04-15 08:08:05.812][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.6.1.
biodb.DEBUG[2023-04-15 08:08:05.813][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.16-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2023-04-15 08:08:05.816][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-15 08:08:05.816][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-04-15 08:08:05.817][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-04-15 08:08:05.818][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:05.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:05.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:05.820][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-04-15 08:08:05.820][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-04-15 08:08:05.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:05.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:05.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:05.823][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-04-15 08:08:05.824][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-04-15 08:08:05.824][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:05.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:05.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:05.826][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-04-15 08:08:05.827][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-04-15 08:08:05.828][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-04-15 08:08:05.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:05.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:05.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:05.830][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-04-15 08:08:05.831][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-04-15 08:08:05.838][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-04-15 08:08:05.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:05.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:05.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:05.840][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-04-15 08:08:05.841][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-04-15 08:08:05.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:05.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:05.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:05.844][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-04-15 08:08:05.845][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-04-15 08:08:05.845][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-04-15 08:08:05.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:05.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:05.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:05.848][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-04-15 08:08:05.849][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-04-15 08:08:05.849][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:05.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:05.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:05.851][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-04-15 08:08:05.852][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-04-15 08:08:05.853][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-04-15 08:08:05.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:05.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:05.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:05.855][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-04-15 08:08:05.856][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-04-15 08:08:05.856][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-04-15 08:08:05.857][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-04-15 08:08:05.858][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-04-15 08:08:05.859][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-04-15 08:08:05.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:05.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:05.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:05.861][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-04-15 08:08:05.862][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-04-15 08:08:05.863][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:05.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:05.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:05.864][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-04-15 08:08:05.865][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-04-15 08:08:05.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:05.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:05.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:05.868][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-04-15 08:08:05.869][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-04-15 08:08:05.869][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:05.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:05.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:05.871][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-04-15 08:08:05.872][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-04-15 08:08:05.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:05.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:05.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:05.874][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-04-15 08:08:05.875][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-04-15 08:08:05.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:05.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:05.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:05.878][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-04-15 08:08:05.878][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-04-15 08:08:05.883][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-04-15 08:08:05.884][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:05.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:05.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:05.886][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-04-15 08:08:05.886][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-04-15 08:08:05.887][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-04-15 08:08:05.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:05.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:05.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:05.890][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-04-15 08:08:05.891][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:05.892][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-04-15 08:08:05.893][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:05.893][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:08:05.894][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:05.895][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:08:05.896][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:05.896][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:08:05.897][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-04-15 08:08:05.898][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:08:05.898][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:05.899][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-04-15 08:08:05.903][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:08:05.904][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:05.905][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:05.906][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:08:05.906][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-15 08:08:05.906][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-15 08:08:05.906][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-04-15 08:08:05.906][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-04-15 08:08:05.906][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:08:05.907][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:05.908][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:05.908][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:08:05.909][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:05.910][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:05.911][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:08:05.911][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:05.912][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:08:05.913][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:08:05.913][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:05.914][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:05.915][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-04-15 08:08:05.916][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:05.917][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-04-15 08:08:05.918][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:05.918][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:08:05.919][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:05.920][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:08:05.920][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:05.921][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:08:05.922][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-04-15 08:08:05.923][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:08:05.923][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:05.924][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-04-15 08:08:05.925][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:08:05.925][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:05.926][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:05.927][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:08:05.927][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-15 08:08:05.927][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-15 08:08:05.927][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-04-15 08:08:05.927][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-04-15 08:08:05.928][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:08:05.928][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:05.929][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:05.930][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:08:05.930][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:05.931][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:05.932][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:08:05.932][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:05.933][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:08:05.934][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:08:05.934][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:05.935][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:05.936][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-04-15 08:08:05.937][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:05.938][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-04-15 08:08:05.939][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:05.939][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:08:05.940][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:05.941][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:08:05.941][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:05.942][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:08:05.943][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-04-15 08:08:05.944][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:08:05.944][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:05.945][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-04-15 08:08:05.946][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:08:05.946][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:05.947][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:05.948][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:05.948][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:08:05.949][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:05.950][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:05.950][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:08:05.951][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:05.952][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:05.952][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:08:05.953][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:05.954][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:08:05.954][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:08:05.955][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:05.956][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:05.957][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-04-15 08:08:05.958][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:05.959][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-04-15 08:08:05.959][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:05.960][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:08:05.961][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:05.961][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:08:05.966][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:05.966][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:08:05.967][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-04-15 08:08:05.968][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:08:05.969][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:05.969][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-04-15 08:08:05.970][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:08:05.971][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:05.972][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:05.972][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:05.973][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:08:05.974][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:05.974][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:05.975][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:08:05.976][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:05.976][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:05.977][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:08:05.978][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:05.978][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:08:05.979][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:08:05.980][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:05.980][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:05.981][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-15 08:08:05.982][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:05.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:05.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:05.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:05.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:05.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:05.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:05.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:05.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:05.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:05.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:05.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:05.989][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:05.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:05.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:05.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:05.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:05.993][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:05.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:05.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:05.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:05.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:05.996][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:05.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:05.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:05.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:05.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:05.999][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.002][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.005][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.009][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.012][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.015][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.018][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.021][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.028][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.031][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.037][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.040][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-04-15 08:08:06.042][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-04-15 08:08:06.043][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-04-15 08:08:06.044][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-04-15 08:08:06.045][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-04-15 08:08:06.046][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-04-15 08:08:06.047][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-04-15 08:08:06.048][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-04-15 08:08:06.049][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-04-15 08:08:06.049][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-04-15 08:08:06.050][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-04-15 08:08:06.051][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-04-15 08:08:06.052][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-04-15 08:08:06.053][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-04-15 08:08:06.054][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-04-15 08:08:06.055][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-04-15 08:08:06.056][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-04-15 08:08:06.057][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-04-15 08:08:06.058][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-04-15 08:08:06.059][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-04-15 08:08:06.060][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-04-15 08:08:06.061][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-04-15 08:08:06.062][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-04-15 08:08:06.063][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-04-15 08:08:06.064][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-04-15 08:08:06.065][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-04-15 08:08:06.066][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-04-15 08:08:06.067][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-04-15 08:08:06.068][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-04-15 08:08:06.069][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-04-15 08:08:06.070][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-04-15 08:08:06.071][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-04-15 08:08:06.072][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-04-15 08:08:06.073][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-04-15 08:08:06.074][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-04-15 08:08:06.075][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-04-15 08:08:06.076][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-04-15 08:08:06.077][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-04-15 08:08:06.078][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-04-15 08:08:06.079][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-04-15 08:08:06.080][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-04-15 08:08:06.081][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-04-15 08:08:06.082][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-04-15 08:08:06.083][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-04-15 08:08:06.087][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-04-15 08:08:06.088][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-04-15 08:08:06.089][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-04-15 08:08:06.090][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-04-15 08:08:06.091][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-04-15 08:08:06.092][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-04-15 08:08:06.093][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-04-15 08:08:06.094][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-04-15 08:08:06.095][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-04-15 08:08:06.096][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-04-15 08:08:06.097][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-04-15 08:08:06.098][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-04-15 08:08:06.099][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-04-15 08:08:06.100][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-04-15 08:08:06.101][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-04-15 08:08:06.102][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-04-15 08:08:06.104][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-04-15 08:08:06.105][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-04-15 08:08:06.106][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-04-15 08:08:06.107][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-04-15 08:08:06.108][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-04-15 08:08:06.109][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-04-15 08:08:06.110][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-04-15 08:08:06.110][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-04-15 08:08:06.111][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-04-15 08:08:06.112][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-04-15 08:08:06.113][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-04-15 08:08:06.114][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-04-15 08:08:06.115][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-04-15 08:08:06.116][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-04-15 08:08:06.117][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-04-15 08:08:06.118][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-04-15 08:08:06.119][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-04-15 08:08:06.120][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-04-15 08:08:06.121][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-04-15 08:08:06.122][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-04-15 08:08:06.123][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-04-15 08:08:06.124][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-04-15 08:08:06.125][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-04-15 08:08:06.126][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-04-15 08:08:06.127][initialize] This is biodb version 1.6.1.
biodb.DEBUG[2023-04-15 08:08:06.128][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-15 08:08:06.129][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.130][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.131][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:06.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:06.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.136][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:06.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:06.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.140][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:06.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:06.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.172][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:06.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:06.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.177][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:06.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:06.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.182][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:06.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:06.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.186][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:06.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:06.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:06.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:06.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.195][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:06.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:06.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.199][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:06.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:06.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.204][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:06.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:06.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:06.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:06.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.213][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:06.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:06.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.217][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:06.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:06.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.222][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:06.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:06.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:06.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:06.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.234][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:06.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:06.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:06.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:06.239][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2023-04-15 08:08:06.240][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2023-04-15 08:08:06.242][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:06.242][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2023-04-15 08:08:06.243][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:06.244][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:08:06.245][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:06.245][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:08:06.246][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:06.247][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:08:06.247][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2023-04-15 08:08:06.248][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:08:06.249][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:06.250][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2023-04-15 08:08:06.250][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:08:06.251][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2023-04-15 08:08:06.251][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2023-04-15 08:08:06.252][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:06.252][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:06.253][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-04-15 08:08:06.254][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:06.254][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:06.255][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:08:06.256][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:06.256][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:06.257][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:08:06.258][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-04-15 08:08:06.258][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2023-04-15 08:08:06.259][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:08:06.259][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:08:06.260][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:06.261][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:06.261][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2023-04-15 08:08:06.263][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:06.263][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2023-04-15 08:08:06.264][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:06.265][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:08:06.266][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:06.266][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:08:06.267][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:06.268][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:08:06.268][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-15 08:08:06.269][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:08:06.270][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:06.270][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2023-04-15 08:08:06.271][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:08:06.272][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2023-04-15 08:08:06.272][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2023-04-15 08:08:06.272][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2023-04-15 08:08:06.272][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2023-04-15 08:08:06.272][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2023-04-15 08:08:06.272][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2023-04-15 08:08:06.273][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:06.273][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:08:06.274][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-04-15 08:08:06.275][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:06.275][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:06.276][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:08:06.277][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:06.277][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:06.278][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:08:06.279][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:08:06.279][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-04-15 08:08:06.279][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:08:06.280][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:08:06.281][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:06.281][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:06.282][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2023-04-15 08:08:06.284][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:06.284][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2023-04-15 08:08:06.285][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:06.286][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:08:06.286][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:06.287][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:08:06.288][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:06.289][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:08:06.289][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-15 08:08:06.290][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:08:06.291][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:06.291][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2023-04-15 08:08:06.292][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:08:06.296][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2023-04-15 08:08:06.296][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:08:06.296][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:08:06.296][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:08:06.296][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:08:06.296][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:08:06.296][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:08:06.296][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:08:06.296][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:08:06.296][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:08:06.296][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2023-04-15 08:08:06.296][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:08:06.296][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:08:06.296][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:08:06.298][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:06.298][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:08:06.298][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-15 08:08:06.298][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-15 08:08:06.299][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2023-04-15 08:08:06.300][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:06.300][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:06.301][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:08:06.302][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:06.303][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:06.303][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:08:06.304][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:08:06.304][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-04-15 08:08:06.304][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2023-04-15 08:08:06.305][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:08:06.305][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:08:06.306][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:06.307][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-04-15 08:08:06.308][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2023-04-15 08:08:06.309][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:06.310][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2023-04-15 08:08:06.311][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:06.311][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:08:06.312][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:06.313][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:08:06.314][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:06.314][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:08:06.315][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-15 08:08:06.316][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:08:06.316][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:06.317][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2023-04-15 08:08:06.318][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:08:06.318][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2023-04-15 08:08:06.318][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2023-04-15 08:08:06.319][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:06.320][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:06.321][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2023-04-15 08:08:06.321][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:06.322][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:06.323][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:08:06.323][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:06.324][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:06.325][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:08:06.325][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:08:06.325][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-04-15 08:08:06.325][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2023-04-15 08:08:06.326][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:08:06.327][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:08:06.327][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:06.328][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-04-15 08:08:06.329][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2023-04-15 08:08:06.330][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-04-15 08:08:06.331][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-04-15 08:08:06.332][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2023-04-15 08:08:06.333][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-04-15 08:08:06.334][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2023-04-15 08:08:06.341][super$initialize] Initialize connector ncbi.gene.
biodb.DEBUG[2023-04-15 08:08:06.341][super$initialize] Register connector ncbi.gene with the request scheduler
biodb.DEBUG[2023-04-15 08:08:06.342][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.gene.
biodb.DEBUG[2023-04-15 08:08:06.343][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2023-04-15 08:08:06.344][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:08:06.345][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:08:06.346][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2023-04-15 08:08:06.347][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:08:06.347][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:08:06.524][biodb$getFactory()$createConn] Creating new connector ncbi.gene for database class ncbi.gene .
biodb.INFO [2023-04-15 08:08:06.527][biodb::testThat]
biodb.INFO [2023-04-15 08:08:06.528][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2023-04-15 08:08:06.528][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:06.529][biodb::testThat]
biodb.TRACE[2023-04-15 08:08:06.533][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-2833-content.xml".
biodb.DEBUG[2023-04-15 08:08:06.534][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:08:06.537][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2023-04-15 08:08:06.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:06.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:06.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:06.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:06.559][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.560][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.560][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.561][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.565][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:06.566][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:06.567][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.567][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.569][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:06.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:06.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.572][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:06.572][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:06.573][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.574][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.575][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:06.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:06.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.579][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:06.579][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:06.580][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.581][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.582][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:06.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:06.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.585][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:06.586][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:06.587][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.588][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.589][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:06.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:06.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.593][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:06.593][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:06.594][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.595][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.597][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:06.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:06.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.604][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:06.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:06.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:06.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:06.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.610][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:06.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:06.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:06.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:06.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:06.639][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2833.
biodb.TRACE[2023-04-15 08:08:06.641][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:06.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:06.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.644][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:06.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:06.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:06.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:06.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.650][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:06.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:06.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.653][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:06.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:06.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:06.656][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2023-04-15 08:08:06.679][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2023-04-15 08:08:06.680][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2023-04-15 08:08:06.681][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2023-04-15 08:08:06.694][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2023-04-15 08:08:06.695][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:08:06.696][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2023-04-15 08:08:06.706][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:08:06.707][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:08:06.708][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2023-04-15 08:08:06.709][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:08:06.710][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2023-04-15 08:08:06.711][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:08:06.712][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:08:06.723][self$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.DEBUG[2023-04-15 08:08:06.724][private$loadEntries] Creating entries from ids [1]: "CCDS14416.1".
biodb.DEBUG[2023-04-15 08:08:06.725][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-15 08:08:06.727][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14416.1".
biodb.TRACE[2023-04-15 08:08:06.728][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:06.730][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14416.1.html".
biodb.DEBUG[2023-04-15 08:08:06.731][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:08:06.732][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:08:06.732][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2023-04-15 08:08:06.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:06.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:06.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:06.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:06.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:06.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:06.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:06.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.763][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:06.764][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:06.764][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.765][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.766][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:06.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:06.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:06.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:06.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:06.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:06.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.777][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:06.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:06.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:06.796][self$createEntryFromContent] Accession numbers: CCDS14416.1.
biodb.TRACE[2023-04-15 08:08:06.797][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:06.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:06.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.799][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:06.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:06.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.802][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:06.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:06.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.810][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:06.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:06.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.813][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:06.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:06.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.817][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:06.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:06.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.821][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:06.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:06.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:06.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:06.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:06.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:06.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:06.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:06.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:06.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:06.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.880][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.881][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.882][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.883][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:06.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:06.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.892][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:06.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:06.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.895][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:06.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:06.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.898][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:06.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:06.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.901][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:06.901][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:06.902][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.903][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.904][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:06.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:06.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.912][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:06.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:06.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.915][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:06.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:06.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.918][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:06.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:06.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.921][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:06.922][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:06.923][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.923][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.924][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:06.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:06.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.932][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:06.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:06.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.936][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:06.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:06.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.939][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:06.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:06.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.942][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:06.942][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:06.943][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.944][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.945][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:06.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:06.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:06.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:06.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:06.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:06.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:06.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:06.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.962][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:06.963][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:06.963][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.964][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.965][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:06.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:06.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.973][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:06.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:06.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.976][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:06.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:06.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.979][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:06.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:06.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.982][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:06.983][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:06.984][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.984][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.985][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:06.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:06.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.993][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:06.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:06.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.996][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:06.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:06.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:06.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:06.999][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:07.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:07.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.002][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:07.003][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:07.004][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.004][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.018][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:07.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:07.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.026][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:07.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:07.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.030][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:07.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:07.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.033][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:07.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:07.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.036][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:07.036][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:07.037][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.038][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.039][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:07.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:07.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.047][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:07.047][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:07.048][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.049][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.052][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:07.053][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:07.054][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.055][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.058][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:07.059][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:07.060][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.061][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.064][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:07.065][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:07.066][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.067][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.070][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:07.071][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:07.072][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.073][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.076][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:07.077][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:07.078][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.078][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.082][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:07.083][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:07.083][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.084][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.088][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:07.088][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:07.089][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.090][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.096][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3002-content.xml".
biodb.DEBUG[2023-04-15 08:08:07.097][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:08:07.098][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2023-04-15 08:08:07.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:07.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:07.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:07.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:07.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:07.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:07.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:07.122][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:07.123][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:07.123][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.124][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:07.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:07.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.129][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:07.129][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:07.130][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.131][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.132][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:07.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:07.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.135][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:07.136][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:07.137][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.137][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.139][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:07.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:07.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.142][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:07.142][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:07.143][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.144][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.145][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:07.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:07.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.148][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:07.149][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:07.150][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.150][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.152][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:07.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:07.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.155][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:07.156][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:07.156][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.157][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.159][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:07.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:07.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:07.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:07.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.167][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:07.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:07.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.170][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:07.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:07.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:07.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:07.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:07.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:07.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:07.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:07.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:07.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:07.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:07.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:07.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:07.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:07.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:07.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:07.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:07.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:07.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:07.195][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3002.
biodb.TRACE[2023-04-15 08:08:07.196][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:07.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:07.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.199][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:07.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:07.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:07.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:07.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.205][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:07.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:07.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:07.208][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:07.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:07.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:07.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:07.211][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2023-04-15 08:08:07.211][private$loadEntries] Creating entries from ids [1]: "CCDS9633.1".
biodb.DEBUG[2023-04-15 08:08:07.242][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-15 08:08:07.253][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS9633.1".
biodb.TRACE[2023-04-15 08:08:07.254][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-04-15 08:08:07.255][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:08:07.256][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:08:07.256][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-04-15 08:08:07.257][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:08:07.258][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-04-15 08:08:07.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:07.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:07.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:07.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:07.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:07.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:07.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:07.274][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.DEBUG[2023-04-15 08:08:07.276][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:08:07.277][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:08:07.278][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.TRACE[2023-04-15 08:08:08.630][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1).
biodb.DEBUG[2023-04-15 08:08:09.816][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:08:09.819][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.content"
biodb.TRACE[2023-04-15 08:08:09.822][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.request"
biodb.TRACE[2023-04-15 08:08:09.823][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS9633.1.html"
biodb.DEBUG[2023-04-15 08:08:09.824][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:08:09.825][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:08:09.826][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2023-04-15 08:08:09.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:09.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:09.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:09.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:09.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:09.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:09.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:09.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:09.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:09.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.847][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:09.848][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:09.849][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.849][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.851][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:09.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:09.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.853][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:09.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:09.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.856][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:09.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:09.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:09.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:09.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:09.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:09.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:09.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:09.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:09.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:09.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:09.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:09.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:09.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:09.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:09.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:09.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:09.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:09.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:09.881][self$createEntryFromContent] Accession numbers: CCDS9633.1.
biodb.TRACE[2023-04-15 08:08:09.888][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:09.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:09.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.891][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:09.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:09.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.893][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:09.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:09.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.896][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:09.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:09.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.899][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:09.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:09.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.902][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:09.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:09.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.905][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:09.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:09.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:09.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:09.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:09.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:09.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:09.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:09.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:09.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:09.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:09.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:09.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:09.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:09.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:09.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:09.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:09.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:09.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:09.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:09.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.940][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:09.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:09.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:09.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:09.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:09.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:09.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:09.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:09.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:09.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:09.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.958][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:09.959][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:09.959][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.960][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:09.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:09.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.968][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:09.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:09.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.971][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:09.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:09.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.974][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:09.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:09.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.976][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:09.977][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:09.978][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.978][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.979][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:09.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:09.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.986][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:09.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:09.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.989][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:09.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:09.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.992][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:09.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:09.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.995][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:09.996][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:09.996][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:09.997][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:09.998][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:09.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:09.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.005][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.007][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.010][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.013][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.014][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.014][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.015][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.016][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.023][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.029][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.032][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.032][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.036][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.041][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.049][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:10.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:10.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.052][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:10.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:10.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.054][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:10.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:10.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.057][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:10.058][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:10.058][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.059][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.060][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:10.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:10.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.067][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:10.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:10.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.070][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:10.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:10.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.072][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:10.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:10.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.075][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:10.076][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:10.076][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.077][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.078][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:10.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:10.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.085][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:10.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.088][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.090][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.093][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:10.094][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.095][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.095][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.096][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:10.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.104][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.105][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.105][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.106][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.109][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:10.110][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:10.111][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.112][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.115][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.116][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.117][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.117][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.121][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:10.122][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:10.122][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.123][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.127][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:10.127][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:10.128][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.129][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.132][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:10.133][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:10.134][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.134][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.138][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.139][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.139][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.140][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.144][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.144][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.145][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.146][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.154][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3627-content.xml".
biodb.DEBUG[2023-04-15 08:08:10.155][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:08:10.156][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2023-04-15 08:08:10.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:10.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:10.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:10.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:10.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:10.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:10.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:10.189][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.190][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.191][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.192][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.197][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:10.197][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:10.198][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.199][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.201][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:10.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:10.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.203][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:10.204][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:10.205][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.206][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.208][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:10.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:10.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.210][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:10.211][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:10.212][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.212][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.214][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:10.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:10.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.217][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:10.218][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:10.219][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.219][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.222][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:10.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:10.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.225][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.225][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.226][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.227][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.230][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.239][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:10.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:10.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.242][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:10.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:10.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.247][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:10.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:10.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:10.267][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3627.
biodb.TRACE[2023-04-15 08:08:10.268][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.271][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.274][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.279][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:10.282][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2023-04-15 08:08:10.283][private$loadEntries] Creating entries from ids [1]: "CCDS43240.1".
biodb.DEBUG[2023-04-15 08:08:10.284][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-15 08:08:10.285][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS43240.1".
biodb.TRACE[2023-04-15 08:08:10.286][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:10.287][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2023-04-15 08:08:10.287][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:08:10.288][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:08:10.289][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2023-04-15 08:08:10.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:10.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:10.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:10.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:10.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:10.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:10.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:10.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.317][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:10.318][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.318][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.319][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.320][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:10.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:10.351][self$createEntryFromContent] Accession numbers: CCDS43240.1.
biodb.TRACE[2023-04-15 08:08:10.352][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.354][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.357][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.360][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:10.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:10.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.363][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:10.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:10.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.365][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:10.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:10.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.368][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:10.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:10.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:10.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:10.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.400][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:10.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:10.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:10.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:10.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:10.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:10.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.422][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.422][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.423][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.424][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.432][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:10.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:10.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.435][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:10.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:10.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.438][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:10.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:10.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.440][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:10.441][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:10.442][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.442][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.443][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:10.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:10.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.451][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:10.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:10.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.454][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:10.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:10.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.456][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:10.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:10.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.459][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:10.460][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:10.460][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.461][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.462][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:10.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:10.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.469][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.472][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.475][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.478][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.478][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.479][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.480][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.480][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.496][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.497][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.497][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.498][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.506][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:10.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:10.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.509][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:10.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:10.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.512][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:10.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:10.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.515][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:10.515][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:10.516][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.517][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.517][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:10.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:10.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.525][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:10.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:10.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:10.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:10.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.531][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:10.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:10.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.534][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:10.534][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:10.535][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.536][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.537][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:10.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:10.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.548][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:10.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.551][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.554][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.556][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:10.557][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.558][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.558][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.559][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:10.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.566][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.567][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.568][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.569][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.572][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:10.573][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:10.573][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.574][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.577][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.578][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.579][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.580][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.583][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:10.584][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:10.584][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.585][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.588][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:10.589][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:10.590][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.590][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.594][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:10.594][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:10.595][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.596][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.599][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.600][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.601][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.601][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.605][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.606][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.606][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.607][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.614][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-4316-content.xml".
biodb.DEBUG[2023-04-15 08:08:10.615][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:08:10.616][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2023-04-15 08:08:10.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:10.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:10.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:10.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:10.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:10.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:10.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:10.642][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.643][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.643][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.644][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.649][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:10.649][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:10.650][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.651][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.652][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:10.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:10.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.655][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:10.656][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:10.657][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.657][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.659][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:10.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:10.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.662][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:10.663][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:10.663][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.664][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.666][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:10.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:10.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.668][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:10.669][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:10.670][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.670][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.672][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:10.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:10.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.675][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.676][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.676][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.677][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.679][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:10.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:10.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:10.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.689][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:10.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:10.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.695][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:10.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:10.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:10.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:10.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:10.714][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 4316.
biodb.TRACE[2023-04-15 08:08:10.716][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.718][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:10.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.721][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:10.727][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:10.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:10.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:10.730][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2023-04-15 08:08:10.731][private$loadEntries] Creating entries from ids [1]: "CCDS8317.1".
biodb.DEBUG[2023-04-15 08:08:10.731][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-15 08:08:10.732][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS8317.1".
biodb.TRACE[2023-04-15 08:08:10.733][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-04-15 08:08:10.734][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:08:10.735][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:08:10.736][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-04-15 08:08:10.736][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:08:10.737][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-04-15 08:08:10.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:10.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:10.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:10.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:10.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:10.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:10.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:10.768][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.DEBUG[2023-04-15 08:08:10.778][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:08:10.779][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:08:10.796][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.TRACE[2023-04-15 08:08:12.332][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1).
biodb.DEBUG[2023-04-15 08:08:13.771][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:08:13.773][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.content"
biodb.TRACE[2023-04-15 08:08:13.775][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.request"
biodb.TRACE[2023-04-15 08:08:13.777][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS8317.1.html"
biodb.DEBUG[2023-04-15 08:08:13.778][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:08:13.779][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:08:13.779][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2023-04-15 08:08:13.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:13.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:13.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:13.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:13.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:13.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:13.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:13.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:13.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:13.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.801][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:13.802][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:13.802][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.803][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.804][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:13.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:13.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:13.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:13.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:13.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:13.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:13.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:13.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.815][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:13.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:13.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:13.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:13.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:13.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:13.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:13.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:13.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:13.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:13.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:13.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:13.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:13.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:13.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:13.857][self$createEntryFromContent] Accession numbers: CCDS8317.1.
biodb.TRACE[2023-04-15 08:08:13.857][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:13.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:13.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.860][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:13.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:13.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.863][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:13.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:13.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.866][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:13.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:13.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.869][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:13.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:13.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.871][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:13.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:13.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.874][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:13.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:13.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:13.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:13.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:13.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:13.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:13.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:13.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:13.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:13.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:13.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:13.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:13.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:13.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:13.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:13.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:13.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:13.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.906][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:13.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:13.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.909][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:13.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:13.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.911][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:13.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:13.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:13.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:13.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:13.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:13.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:13.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:13.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.926][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:13.927][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:13.927][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.928][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:13.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:13.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.936][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:13.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:13.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.938][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:13.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:13.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.941][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:13.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:13.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.944][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:13.945][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:13.945][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.946][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.947][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:13.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:13.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.954][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:13.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:13.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.956][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:13.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:13.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.959][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:13.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:13.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.962][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:13.963][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:13.963][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.964][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.965][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:13.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:13.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.972][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:13.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:13.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.974][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:13.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:13.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.977][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:13.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:13.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.980][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:13.980][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:13.981][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.982][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.982][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:13.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:13.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.997][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:13.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:13.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:13.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:13.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:14.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:14.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.002][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:14.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:14.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.005][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:14.005][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:14.006][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.007][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:14.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:14.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.014][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:14.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:14.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.017][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:14.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:14.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.020][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:14.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:14.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.022][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:14.023][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:14.024][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.024][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.025][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:14.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:14.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.032][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:14.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:14.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.035][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:14.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:14.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.037][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:14.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:14.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.040][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:14.041][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:14.041][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.042][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.043][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:14.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:14.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.050][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:14.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:14.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.053][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:14.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:14.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.056][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:14.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:14.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.058][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:14.059][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:14.060][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.060][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.061][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:14.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:14.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.068][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:14.069][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:14.070][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.070][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.074][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:14.074][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:14.075][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.076][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.079][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:14.080][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:14.080][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.081][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.084][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:14.085][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:14.086][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.086][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.090][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:14.091][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:14.091][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.092][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.095][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:14.096][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:14.097][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.097][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.101][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:14.101][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:14.102][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.103][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.106][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:14.107][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:14.108][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.108][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.121][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-50943-content.xml".
biodb.DEBUG[2023-04-15 08:08:14.122][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:08:14.123][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2023-04-15 08:08:14.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:14.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:14.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:14.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:14.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:14.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:14.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:14.170][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:14.171][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:14.172][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.172][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:14.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:14.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.177][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:14.178][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:14.179][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.179][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.181][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:14.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:14.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.184][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:14.185][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:14.186][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.186][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.188][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:14.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:14.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.191][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:14.192][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:14.193][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.193][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.195][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:14.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:14.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.198][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:14.199][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:14.199][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.200][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.202][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:14.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:14.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.205][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:14.205][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:14.206][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.207][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.210][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:14.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:14.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.216][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:14.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:14.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:14.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:14.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.222][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:14.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:14.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:14.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:14.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.227][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:14.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:14.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:14.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:14.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:14.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:14.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:14.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:14.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:14.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:14.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:14.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:14.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:14.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:14.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:14.246][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 50943.
biodb.TRACE[2023-04-15 08:08:14.248][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:14.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:14.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.251][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:14.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:14.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:14.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:14.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:14.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:14.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:14.260][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:14.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:14.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:14.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:14.262][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2023-04-15 08:08:14.263][private$loadEntries] Creating entries from ids [1]: "CCDS14323.1".
biodb.DEBUG[2023-04-15 08:08:14.264][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-15 08:08:14.265][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14323.1".
biodb.TRACE[2023-04-15 08:08:14.266][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-04-15 08:08:14.267][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:08:14.267][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:08:14.278][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-04-15 08:08:14.278][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:08:14.279][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-04-15 08:08:14.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:14.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:14.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:14.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:14.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:14.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:14.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:14.289][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.DEBUG[2023-04-15 08:08:14.290][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:08:14.291][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:08:14.292][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.TRACE[2023-04-15 08:08:15.665][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1).
biodb.DEBUG[2023-04-15 08:08:16.920][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:08:16.921][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.content"
biodb.TRACE[2023-04-15 08:08:16.924][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.request"
biodb.TRACE[2023-04-15 08:08:16.925][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14323.1.html"
biodb.DEBUG[2023-04-15 08:08:16.927][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:08:16.927][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:08:16.928][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2023-04-15 08:08:16.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:16.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:16.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:16.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:16.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:16.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:16.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:16.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:16.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:16.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:16.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:16.953][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:16.954][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:16.954][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:16.955][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:16.956][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:16.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:16.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:16.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:16.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:16.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:16.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:16.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:16.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:16.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:16.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:16.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:16.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:16.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:16.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:16.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:16.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:16.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:16.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:16.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:16.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:16.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:16.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:16.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:16.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:16.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:16.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:16.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:16.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:16.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:16.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:16.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:16.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:16.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:16.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:16.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:16.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:16.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:16.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:16.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:16.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:16.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:16.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:16.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:16.987][self$createEntryFromContent] Accession numbers: CCDS14323.1.
biodb.TRACE[2023-04-15 08:08:16.988][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:16.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:16.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:16.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:16.991][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:16.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:16.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:16.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:16.993][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:16.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:16.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:16.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:16.996][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:16.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:16.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:16.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:16.999][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:17.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:17.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.002][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:17.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:17.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.005][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:17.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:17.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:17.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:17.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:17.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:17.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:17.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:17.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:17.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:17.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:17.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:17.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:17.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:17.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:17.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:17.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:17.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:17.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:17.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:17.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:17.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:17.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:17.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:17.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:17.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:17.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:17.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:17.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:17.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:17.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.057][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:17.058][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:17.059][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.060][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:17.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:17.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.068][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:17.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:17.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.070][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:17.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:17.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.073][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:17.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:17.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.076][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:17.077][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:17.077][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.078][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.079][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:17.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:17.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.086][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:17.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:17.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.089][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:17.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:17.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.092][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:17.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:17.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.095][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:17.095][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:17.096][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.097][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.097][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:17.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:17.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.105][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:17.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:17.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.107][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:17.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:17.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.110][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:17.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:17.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.113][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:17.114][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:17.114][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.115][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.116][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:17.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:17.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:17.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:17.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.126][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:17.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:17.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.129][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:17.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:17.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.131][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:17.132][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:17.133][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.134][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:17.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:17.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.150][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:17.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:17.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.153][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:17.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:17.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.156][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:17.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:17.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.159][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:17.159][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:17.160][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.161][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.161][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:17.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:17.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.169][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:17.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:17.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:17.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:17.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.174][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:17.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:17.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.177][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:17.178][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:17.178][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.179][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.180][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:17.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:17.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.187][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:17.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:17.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.190][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:17.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:17.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.192][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:17.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:17.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.195][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:17.196][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:17.197][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.197][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.198][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:17.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:17.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.206][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:17.207][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:17.207][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.208][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.211][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:17.212][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:17.213][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.214][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.217][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:17.218][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:17.218][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.219][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.223][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:17.223][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:17.224][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.225][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.228][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:17.229][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:17.230][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.230][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.234][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:17.235][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:17.235][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.236][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.239][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:17.240][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:17.241][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.241][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.245][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:17.246][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:17.246][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.247][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.253][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-5551-content.xml".
biodb.DEBUG[2023-04-15 08:08:17.254][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:08:17.255][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2023-04-15 08:08:17.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:17.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:17.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:17.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:17.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:17.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:17.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:17.275][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:17.276][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:17.277][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.278][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:17.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:17.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.282][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:17.283][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:17.283][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.284][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.286][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:17.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:17.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.288][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:17.289][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:17.290][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.291][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.292][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:17.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:17.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.295][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:17.296][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:17.296][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.297][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.299][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:17.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:17.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.301][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:17.302][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:17.303][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.303][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.305][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:17.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:17.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.308][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:17.309][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:17.309][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.310][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.312][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:17.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:17.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:17.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:17.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:17.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:17.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:17.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:17.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:17.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:17.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.328][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:17.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:17.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:17.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:17.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:17.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:17.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:17.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:17.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:17.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:17.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:17.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:17.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:17.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:17.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:17.347][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 5551.
biodb.TRACE[2023-04-15 08:08:17.349][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:17.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:17.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.351][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:17.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:17.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:17.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:17.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:17.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:17.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:17.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:17.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:17.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:17.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:17.362][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2023-04-15 08:08:17.363][private$loadEntries] Creating entries from ids [1]: "CCDS7305.1".
biodb.DEBUG[2023-04-15 08:08:17.364][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-15 08:08:17.365][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS7305.1".
biodb.TRACE[2023-04-15 08:08:17.366][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-04-15 08:08:17.367][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:08:17.368][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:08:17.368][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-04-15 08:08:17.369][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:08:17.370][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-04-15 08:08:17.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:17.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:17.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:17.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:17.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:17.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:17.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:17.380][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.DEBUG[2023-04-15 08:08:17.382][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:08:17.382][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:08:17.383][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.TRACE[2023-04-15 08:08:18.497][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1).
biodb.DEBUG[2023-04-15 08:08:19.740][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:08:19.746][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.content"
biodb.TRACE[2023-04-15 08:08:19.749][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.request"
biodb.TRACE[2023-04-15 08:08:19.750][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS7305.1.html"
biodb.DEBUG[2023-04-15 08:08:19.751][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:08:19.752][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:08:19.753][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2023-04-15 08:08:19.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:19.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:19.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:19.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:19.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:19.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:19.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:19.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:19.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:19.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.779][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:19.780][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:19.780][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.781][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.782][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:19.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:19.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:19.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:19.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:19.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:19.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:19.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:19.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.793][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:19.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:19.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:19.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:19.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:19.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:19.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:19.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:19.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:19.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:19.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:19.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:19.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:19.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:19.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:19.812][self$createEntryFromContent] Accession numbers: CCDS7305.1.
biodb.TRACE[2023-04-15 08:08:19.813][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:19.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:19.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.816][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:19.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:19.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.819][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:19.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:19.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.822][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:19.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:19.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.824][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:19.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:19.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.827][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:19.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:19.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.830][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:19.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:19.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:19.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:19.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.839][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:19.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:19.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:19.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:19.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:19.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:19.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:19.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:19.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:19.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:19.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:19.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:19.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:19.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:19.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.862][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:19.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:19.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.865][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:19.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:19.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:19.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:19.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:19.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:19.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:19.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:19.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:19.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:19.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.883][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:19.884][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:19.884][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.885][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:19.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:19.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.893][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:19.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:19.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.896][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:19.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:19.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.899][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:19.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:19.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.902][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:19.902][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:19.903][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.904][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.904][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:19.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:19.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.912][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:19.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:19.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.915][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:19.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:19.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.917][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:19.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:19.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.920][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:19.921][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:19.922][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.922][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.923][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:19.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:19.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.930][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:19.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:19.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.933][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:19.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:19.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.936][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:19.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:19.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.939][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:19.940][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:19.940][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.941][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.942][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:19.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:19.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:19.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:19.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:19.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:19.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:19.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:19.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.957][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:19.958][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:19.959][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.959][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:19.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:19.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.968][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:19.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:19.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.970][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:19.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:19.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.973][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:19.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:19.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.976][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:19.977][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:19.977][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.978][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.979][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:19.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:19.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.994][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:19.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:19.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:19.997][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:19.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:19.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:19.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.000][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:20.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:20.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.002][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:20.003][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:20.004][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.004][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.005][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:20.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:20.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.013][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:20.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:20.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.015][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:20.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:20.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.018][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:20.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:20.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.021][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:20.022][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:20.022][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.023][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.023][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:20.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:20.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.031][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:20.032][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:20.032][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.033][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.037][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:20.037][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:20.038][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.039][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.042][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:20.043][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:20.044][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.044][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.048][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:20.049][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:20.050][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.050][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.054][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:20.055][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:20.055][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.056][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.059][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:20.060][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:20.061][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.062][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.065][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:20.066][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:20.067][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.067][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.071][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:20.072][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:20.072][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.073][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.079][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-916-content.xml".
biodb.DEBUG[2023-04-15 08:08:20.080][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:08:20.081][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2023-04-15 08:08:20.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:20.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:20.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:20.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:20.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:20.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:20.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:20.101][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:20.102][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:20.103][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.104][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:20.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:20.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.108][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:20.109][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:20.109][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.110][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.112][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:20.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:20.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.114][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:20.115][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:20.116][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.117][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.118][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:20.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:20.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.121][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:20.122][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:20.122][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.123][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.124][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:20.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:20.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.127][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:20.128][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:20.129][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.129][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.131][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:20.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:20.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.134][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:20.134][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:20.135][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.136][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.138][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:20.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:20.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.142][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:20.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:20.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.145][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:20.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:20.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:20.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:20.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:20.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:20.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.153][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:20.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:20.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:20.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:20.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:20.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:20.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:20.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:20.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:20.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:20.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:20.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:20.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:20.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:20.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:20.173][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 916.
biodb.TRACE[2023-04-15 08:08:20.174][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:20.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:20.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.177][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:20.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:20.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:20.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:20.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:20.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:20.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:20.186][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:20.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:20.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:20.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:20.188][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2023-04-15 08:08:20.189][private$loadEntries] Creating entries from ids [1]: "CCDS31685.1".
biodb.DEBUG[2023-04-15 08:08:20.190][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-15 08:08:20.191][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS31685.1".
biodb.TRACE[2023-04-15 08:08:20.192][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-04-15 08:08:20.193][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:08:20.193][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:08:20.194][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-04-15 08:08:20.195][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:08:20.195][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-04-15 08:08:20.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:20.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:20.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:20.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:20.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:20.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:20.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:20.206][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.DEBUG[2023-04-15 08:08:20.207][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:08:20.208][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:08:20.209][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.TRACE[2023-04-15 08:08:21.315][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1).
biodb.DEBUG[2023-04-15 08:08:22.875][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:08:22.879][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.content"
biodb.TRACE[2023-04-15 08:08:22.882][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.request"
biodb.TRACE[2023-04-15 08:08:22.883][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS31685.1.html"
biodb.DEBUG[2023-04-15 08:08:22.885][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:08:22.885][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:08:22.886][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2023-04-15 08:08:22.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:22.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:22.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:22.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:22.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:22.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:22.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:22.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:22.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:22.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:22.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:22.917][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:22.918][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:22.919][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:22.919][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:22.920][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:22.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:22.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:22.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:22.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:22.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:22.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:22.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:22.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:22.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:22.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:22.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:22.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:22.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:22.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:22.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:22.931][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:22.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:22.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:22.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:22.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:22.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:22.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:22.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:22.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:22.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:22.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:22.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:22.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:22.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:22.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:22.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:22.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:22.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:22.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:22.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:22.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:22.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:22.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:22.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:22.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:22.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:22.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:22.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:22.950][self$createEntryFromContent] Accession numbers: CCDS31685.1.
biodb.TRACE[2023-04-15 08:08:22.951][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:22.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:22.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:22.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:22.954][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:22.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:22.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:22.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:22.957][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:22.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:22.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:22.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:22.959][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:22.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:22.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:22.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:22.962][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:22.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:22.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:22.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:22.965][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:22.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:22.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:22.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:22.968][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:22.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:22.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:22.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:22.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:22.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:22.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:22.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:22.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:22.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:22.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:22.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:22.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:22.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:22.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:22.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:22.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:22.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:22.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:22.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:22.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:22.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:22.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:22.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:22.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:22.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:22.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:22.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:22.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:22.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:22.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:22.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:22.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:22.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:22.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.001][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.006][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.022][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.022][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.023][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.024][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.032][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:23.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.035][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.037][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.040][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:23.041][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.042][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.042][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.043][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:23.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.050][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:23.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:23.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.053][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:23.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:23.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.056][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:23.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:23.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.059][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:23.060][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:23.060][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.061][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.062][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:23.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:23.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.069][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.072][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.075][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.078][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.078][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.079][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.080][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.081][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:23.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:23.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:23.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:23.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.094][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:23.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:23.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.097][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:23.097][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:23.098][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.099][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.099][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:23.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:23.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.107][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:23.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:23.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.110][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:23.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:23.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.112][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:23.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:23.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.115][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:23.116][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:23.116][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.117][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.118][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:23.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:23.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.125][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:23.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:23.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.128][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:23.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:23.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.131][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:23.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:23.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.134][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:23.134][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:23.135][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.136][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.136][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:23.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:23.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.148][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:23.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:23.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.150][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:23.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:23.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.153][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:23.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:23.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.156][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:23.157][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:23.157][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.158][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.158][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:08:23.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:23.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.166][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:23.166][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:23.167][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.168][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.171][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:23.172][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:23.172][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.173][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.176][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.177][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.178][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.179][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.182][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:23.183][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:23.183][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.184][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.187][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.188][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.189][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.189][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.193][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:23.193][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:23.194][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.195][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.198][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:23.199][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:23.200][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.200][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.204][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.205][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.205][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.206][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.209][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-9606-content.xml".
biodb.DEBUG[2023-04-15 08:08:23.210][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:08:23.211][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2023-04-15 08:08:23.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:23.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:23.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:23.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:23.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:23.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:23.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:23.221][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.221][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.222][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.223][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.226][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:23.227][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:23.228][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.228][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.229][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:23.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:23.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.232][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:23.233][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:23.234][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.234][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.235][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:23.236][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.236][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.237][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.238][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:23.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.241][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:23.242][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:23.242][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.243][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.244][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.244][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.245][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.246][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.247][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.255][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:23.275][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 9606.
biodb.TRACE[2023-04-15 08:08:23.276][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:23.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:23.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.279][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:23.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:23.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.282][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:23.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:23.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.285][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:23.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:23.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.288][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:23.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:23.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.291][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:23.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:23.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.293][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:23.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:23.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.302][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.331][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.346][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.347][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.348][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.348][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.357][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:23.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.359][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.366][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.369][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:23.370][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.370][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.371][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.372][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:23.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.379][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:23.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:23.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.382][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:23.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:23.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.385][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:23.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:23.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.388][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:23.389][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:23.389][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.390][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.391][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:23.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:23.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.398][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.399][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.399][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.400][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.403][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:23.404][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:23.405][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.406][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.409][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.410][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.410][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.411][ef$get] fields variable is a list.
biodb.INFO [2023-04-15 08:08:23.415][biodb::testThat]
biodb.INFO [2023-04-15 08:08:23.416][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2023-04-15 08:08:23.416][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:23.417][biodb::testThat]
biodb.DEBUG[2023-04-15 08:08:23.419][private$loadEntries] Creating entries from ids [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.DEBUG[2023-04-15 08:08:23.420][conn$getEntryContent] Get NCBI Gene entry content(s) for 8 id(s)...
biodb.TRACE[2023-04-15 08:08:23.421][cch$loadFileContent] Trying to load 8 files from cache: [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.TRACE[2023-04-15 08:08:23.422][cch$loadFileContent] file.exist = [8]: "TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE".
biodb.TRACE[2023-04-15 08:08:23.476][loadFileContents] Loaded 8 files from cache: [8]: "/home/biocbuild/.cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/2833.xml, /home/biocbuild/.cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3002.xml, /home/biocbuild/.cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3627.xml, /home/biocbuild/.cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/4316.xml, /home/biocbuild/.cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/50943.xml, /home/biocbuild/.cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/5551.xml, /home/biocbuild/.cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/916.xml, /home/biocbuild/.cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/9606.xml".
biodb.DEBUG[2023-04-15 08:08:23.477][conn$getEntryContent] 8 NCBI Gene entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:08:23.479][self$createEntryFromContent] Creating NCBI Gene entries from 8 content(s).
biodb.DEBUG[2023-04-15 08:08:23.480][self$createEntryFromContent] Parsing 8 NCBI Gene entries.
biodb.DEBUG[2023-04-15 08:08:23.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:23.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:23.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:23.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:23.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:23.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:23.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:23.503][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.504][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.505][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.505][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.510][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:23.510][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:23.511][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.512][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.513][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:23.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:23.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.516][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:23.517][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:23.517][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.518][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.520][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:23.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:23.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.522][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:23.523][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.524][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.524][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.526][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:23.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.529][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:23.529][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:23.530][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.531][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.532][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:23.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:23.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.535][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.536][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.536][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.537][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.539][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.544][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:23.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:23.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.547][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.550][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:23.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:23.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:23.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:23.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:23.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:23.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:23.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:23.588][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.589][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.590][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.591][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.595][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:23.596][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:23.597][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.597][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.599][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:23.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:23.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.602][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:23.602][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:23.603][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.604][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.605][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:23.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:23.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.608][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:23.609][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.609][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.610][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.611][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:23.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.614][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:23.615][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:23.615][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.616][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.617][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:23.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:23.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.620][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.621][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.622][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.622][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.624][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:23.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:23.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.635][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.640][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:23.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:23.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:23.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:23.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:23.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:23.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:23.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:23.684][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.685][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.686][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.686][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.691][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:23.692][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:23.693][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.693][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.695][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:23.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:23.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.698][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:23.698][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:23.699][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.700][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.701][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:23.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:23.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.704][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:23.705][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.706][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.706][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.708][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:23.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.711][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:23.720][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:23.720][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.721][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.723][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:23.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:23.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.726][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.726][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.727][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.728][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.730][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.735][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:23.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:23.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:23.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:23.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:23.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:23.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:23.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:23.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:23.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:23.782][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.783][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.784][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.784][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.789][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:23.790][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:23.790][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.791][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.793][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:23.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:23.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.795][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:23.796][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:23.797][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.798][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.799][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:23.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:23.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.802][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:23.803][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.804][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.804][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.806][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:23.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.809][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:23.810][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:23.810][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.811][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.812][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:23.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:23.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.815][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.816][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.817][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.817][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.820][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:23.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:23.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.827][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.830][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.836][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:23.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:23.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:23.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:23.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:23.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:23.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:23.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:23.892][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.893][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.893][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.894][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.899][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:23.900][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:23.901][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.901][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.903][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:23.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:23.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.906][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:23.907][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:23.908][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.908][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.910][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:23.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:23.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.913][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:23.914][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.915][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.915][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.917][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:23.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:23.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.920][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:23.921][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:23.922][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.922][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.925][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:23.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:23.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.927][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.928][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.929][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.930][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.934][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:23.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.942][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:23.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:23.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.945][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:23.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:23.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:23.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:23.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:23.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:23.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:23.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:23.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:23.983][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.984][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.985][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.985][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:23.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:23.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.990][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:23.990][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:23.991][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.992][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.993][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:23.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:23.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.996][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:23.997][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:23.997][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:23.998][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:23.999][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:24.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:24.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.002][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:24.003][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:24.003][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.004][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.005][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:24.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:24.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.008][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:24.009][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:24.010][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.010][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.011][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:24.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:24.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.014][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:24.015][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:24.016][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.016][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.018][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:24.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:24.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.022][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:24.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:24.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.025][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:24.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:24.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:24.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:24.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:24.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:24.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:24.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:24.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:24.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:24.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:24.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:24.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:24.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:24.075][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.076][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.077][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.077][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.081][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:24.082][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:24.083][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.084][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.085][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:24.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:24.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.088][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:24.089][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:24.089][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.090][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.091][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:24.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:24.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.094][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:24.095][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:24.096][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.096][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.097][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:24.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:24.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.100][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:24.101][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:24.102][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.102][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.104][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:24.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:24.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.106][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:24.107][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:24.108][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.108][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.110][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:24.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:24.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.114][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:24.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:24.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.117][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:24.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:24.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.120][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:24.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:24.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.126][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:24.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:24.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:24.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:24.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:24.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:24.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:24.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:24.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:24.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:24.146][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.146][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.147][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.148][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.151][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:24.152][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:24.153][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.153][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.154][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:08:24.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:08:24.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.157][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:08:24.158][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:08:24.159][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.159][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.160][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:24.161][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:24.162][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.162][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.163][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:08:24.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:08:24.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.166][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:08:24.167][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:24.168][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.168][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.169][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:24.170][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:08:24.170][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.171][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.172][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:24.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:24.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:24.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:24.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:24.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:08:24.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:24.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:24.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:24.258][self$createEntryFromContent] Accession numbers: 2833, 3002, 3627, 4316, 50943, 5551, 916, 9606.
biodb.TRACE[2023-04-15 08:08:24.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-04-15 08:08:24.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-04-15 08:08:24.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:08:24.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:08:24.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:08:24.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:08:24.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-04-15 08:08:24.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-04-15 08:08:24.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:08:24.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:08:24.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:08:24.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:08:24.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-04-15 08:08:24.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-04-15 08:08:24.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:08:24.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:08:24.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:08:24.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:08:24.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-04-15 08:08:24.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-04-15 08:08:24.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:08:24.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:08:24.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:08:24.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:08:24.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-04-15 08:08:24.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-04-15 08:08:24.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:08:24.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:08:24.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:08:24.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:08:24.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-04-15 08:08:24.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-04-15 08:08:24.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:08:24.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:08:24.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:08:24.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:08:24.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-04-15 08:08:24.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-04-15 08:08:24.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:08:24.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:08:24.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:08:24.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:08:24.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-04-15 08:08:24.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-04-15 08:08:24.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:08:24.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:08:24.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:08:24.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:08:24.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-15 08:08:24.358][biodb::testThat]
biodb.INFO [2023-04-15 08:08:24.359][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2023-04-15 08:08:24.359][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:24.360][biodb::testThat]
biodb.TRACE[2023-04-15 08:08:24.362][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:24.363][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:24.363][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.364][ef$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:24.365][function(conn, opt)] Testing searchForEntries() with entry "2833" and field "name".
biodb.TRACE[2023-04-15 08:08:24.374][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:24.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:24.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.377][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:24.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:24.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.380][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:24.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:24.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:24.384][function(conn, opt)] With value "GPR9".
biodb.DEBUG[2023-04-15 08:08:24.416][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2023-04-15 08:08:24.419][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:24.420][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2023-04-15 08:08:24.421][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:24.423][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.DEBUG[2023-04-15 08:08:24.425][function(conn, opt)] With found IDs [1]: "2833".
biodb.INFO [2023-04-15 08:08:24.436][biodb::testThat]
biodb.INFO [2023-04-15 08:08:24.437][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2023-04-15 08:08:24.438][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:24.439][biodb::testThat]
biodb.TRACE[2023-04-15 08:08:24.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:24.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:24.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.451][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:24.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:24.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.454][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:24.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:24.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:24.482][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2023-04-15 08:08:24.484][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:24.486][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2023-04-15 08:08:24.487][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:24.488][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.INFO [2023-04-15 08:08:24.499][biodb::testThat]
biodb.INFO [2023-04-15 08:08:24.500][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2023-04-15 08:08:24.501][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:24.502][biodb::testThat]
biodb.TRACE[2023-04-15 08:08:24.509][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:24.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:24.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.513][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:24.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:24.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:24.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:24.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:24.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:24.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.522][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:24.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:24.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:24.525][private$computeField] Compute value for field "aa.seq".
biodb.TRACE[2023-04-15 08:08:24.526][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:24.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:24.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.529][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:24.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:24.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.532][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:24.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:24.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.535][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:24.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:24.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.538][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:24.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:24.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.541][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:24.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:24.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.553][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:24.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:24.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.557][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:24.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:24.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.560][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:24.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:24.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.563][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:24.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:24.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.566][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:24.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:24.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.569][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:24.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:24.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:24.572][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:24.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:24.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:24.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-15 08:08:24.577][biodb::testThat]
biodb.INFO [2023-04-15 08:08:24.577][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2023-04-15 08:08:24.578][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:24.579][biodb::testThat]
biodb.INFO [2023-04-15 08:08:24.585][biodb::testThat]
biodb.INFO [2023-04-15 08:08:24.586][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2023-04-15 08:08:24.587][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:24.587][biodb::testThat]
biodb.INFO [2023-04-15 08:08:24.591][biodb::testThat]
biodb.INFO [2023-04-15 08:08:24.591][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2023-04-15 08:08:24.592][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:24.593][biodb::testThat]
biodb.DEBUG[2023-04-15 08:08:24.595][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/gene?term=2833".
biodb.DEBUG[2023-04-15 08:08:27.239][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/gene?term=2833.
biodb.INFO [2023-04-15 08:08:30.360][biodb::testThat]
biodb.INFO [2023-04-15 08:08:30.361][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2023-04-15 08:08:30.362][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:30.362][biodb::testThat]
biodb.INFO [2023-04-15 08:08:30.365][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-04-15 08:08:30.366][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.gene from the request scheduler
biodb.INFO [2023-04-15 08:08:30.367][self$deleteConn] Connector "ncbi.gene" deleted.
biodb.DEBUG[2023-04-15 08:08:30.368][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2023-04-15 08:08:30.376][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2023-04-15 08:08:30.377][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-04-15 08:08:30.378][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:30.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:30.379][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.381][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-04-15 08:08:30.385][biodb::testContext]
biodb.INFO [2023-04-15 08:08:30.385][biodb::testContext] ********************************************************************************
biodb.INFO [2023-04-15 08:08:30.386][biodb::testContext] Test context - Pubchem comp long tests
biodb.INFO [2023-04-15 08:08:30.387][biodb::testContext] ********************************************************************************
biodb.INFO [2023-04-15 08:08:30.388][biodb::testContext]
biodb.INFO [2023-04-15 08:08:30.389][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.6.1.
biodb.DEBUG[2023-04-15 08:08:30.391][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.16-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2023-04-15 08:08:30.394][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-15 08:08:30.394][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-04-15 08:08:30.395][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-04-15 08:08:30.396][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.398][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-04-15 08:08:30.399][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-04-15 08:08:30.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.402][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-04-15 08:08:30.403][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-04-15 08:08:30.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.406][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-04-15 08:08:30.407][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-04-15 08:08:30.408][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-04-15 08:08:30.409][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.411][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-04-15 08:08:30.412][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-04-15 08:08:30.413][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-04-15 08:08:30.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.416][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-04-15 08:08:30.417][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-04-15 08:08:30.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.420][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-04-15 08:08:30.421][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-04-15 08:08:30.422][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-04-15 08:08:30.423][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.425][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-04-15 08:08:30.426][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-04-15 08:08:30.426][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.429][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-04-15 08:08:30.429][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-04-15 08:08:30.430][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-04-15 08:08:30.431][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.433][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-04-15 08:08:30.434][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-04-15 08:08:30.434][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-04-15 08:08:30.435][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-04-15 08:08:30.436][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-04-15 08:08:30.437][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-04-15 08:08:30.437][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.440][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-04-15 08:08:30.441][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-04-15 08:08:30.441][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.443][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-04-15 08:08:30.444][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-04-15 08:08:30.445][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.447][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-04-15 08:08:30.448][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-04-15 08:08:30.448][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.450][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-04-15 08:08:30.451][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-04-15 08:08:30.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.454][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-04-15 08:08:30.455][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-04-15 08:08:30.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.458][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-04-15 08:08:30.459][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-04-15 08:08:30.463][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-04-15 08:08:30.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.466][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-04-15 08:08:30.467][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-04-15 08:08:30.467][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-04-15 08:08:30.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.470][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-04-15 08:08:30.472][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:30.473][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-04-15 08:08:30.474][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.474][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:08:30.475][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.476][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:08:30.477][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:30.481][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:08:30.482][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-04-15 08:08:30.483][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:08:30.484][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.485][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-04-15 08:08:30.486][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:08:30.486][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:30.487][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.488][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:08:30.488][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-15 08:08:30.488][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-15 08:08:30.488][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-04-15 08:08:30.488][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-04-15 08:08:30.489][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:08:30.489][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:30.490][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:30.491][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:08:30.492][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:30.492][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:30.493][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:08:30.494][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:30.495][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:08:30.495][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:08:30.496][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:30.497][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:30.498][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-04-15 08:08:30.499][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:30.500][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-04-15 08:08:30.501][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.502][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:08:30.502][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.503][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:08:30.504][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:30.505][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:08:30.505][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-04-15 08:08:30.506][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:08:30.507][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.508][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-04-15 08:08:30.509][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:08:30.509][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:30.510][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.511][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:08:30.511][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-15 08:08:30.511][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-15 08:08:30.511][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-04-15 08:08:30.511][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-04-15 08:08:30.512][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:08:30.512][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:30.513][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:30.514][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:08:30.514][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:30.515][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:30.516][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:08:30.517][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:30.518][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:08:30.518][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:08:30.519][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:30.520][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:30.521][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-04-15 08:08:30.522][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.523][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-04-15 08:08:30.524][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.524][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:08:30.525][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.526][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:08:30.527][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:30.528][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:08:30.528][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-04-15 08:08:30.529][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:08:30.530][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:30.531][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-04-15 08:08:30.531][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:08:30.532][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:30.533][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.534][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:30.534][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:08:30.535][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:30.536][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:30.537][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:08:30.537][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:30.538][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:30.539][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:08:30.540][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:30.540][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:08:30.541][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:08:30.542][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:30.543][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:30.544][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-04-15 08:08:30.545][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.546][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-04-15 08:08:30.547][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.547][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:08:30.548][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.549][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:08:30.550][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:30.550][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:08:30.551][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-04-15 08:08:30.552][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:08:30.553][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:30.554][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-04-15 08:08:30.554][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:08:30.555][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:30.556][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.557][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:30.558][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:08:30.558][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:30.559][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:30.560][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:08:30.561][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:30.561][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:30.562][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:08:30.563][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:30.564][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:08:30.564][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:08:30.565][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:30.566][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:30.567][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-15 08:08:30.567][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.569][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.579][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.583][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.586][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.590][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.593][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.606][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.616][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.630][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.633][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-04-15 08:08:30.634][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-04-15 08:08:30.636][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-04-15 08:08:30.637][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-04-15 08:08:30.638][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-04-15 08:08:30.639][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-04-15 08:08:30.640][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-04-15 08:08:30.641][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-04-15 08:08:30.642][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-04-15 08:08:30.643][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-04-15 08:08:30.644][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-04-15 08:08:30.645][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-04-15 08:08:30.646][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-04-15 08:08:30.647][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-04-15 08:08:30.648][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-04-15 08:08:30.650][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-04-15 08:08:30.651][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-04-15 08:08:30.652][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-04-15 08:08:30.653][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-04-15 08:08:30.654][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-04-15 08:08:30.655][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-04-15 08:08:30.656][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-04-15 08:08:30.657][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-04-15 08:08:30.658][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-04-15 08:08:30.659][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-04-15 08:08:30.660][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-04-15 08:08:30.661][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-04-15 08:08:30.662][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-04-15 08:08:30.663][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-04-15 08:08:30.664][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-04-15 08:08:30.665][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-04-15 08:08:30.666][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-04-15 08:08:30.667][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-04-15 08:08:30.668][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-04-15 08:08:30.669][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-04-15 08:08:30.670][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-04-15 08:08:30.671][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-04-15 08:08:30.672][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-04-15 08:08:30.673][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-04-15 08:08:30.674][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-04-15 08:08:30.675][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-04-15 08:08:30.676][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-04-15 08:08:30.677][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-04-15 08:08:30.678][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-04-15 08:08:30.679][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-04-15 08:08:30.680][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-04-15 08:08:30.681][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-04-15 08:08:30.683][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-04-15 08:08:30.684][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-04-15 08:08:30.685][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-04-15 08:08:30.686][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-04-15 08:08:30.687][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-04-15 08:08:30.688][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-04-15 08:08:30.689][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-04-15 08:08:30.690][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-04-15 08:08:30.691][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-04-15 08:08:30.692][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-04-15 08:08:30.693][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-04-15 08:08:30.694][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-04-15 08:08:30.695][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-04-15 08:08:30.696][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-04-15 08:08:30.697][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-04-15 08:08:30.698][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-04-15 08:08:30.699][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-04-15 08:08:30.700][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-04-15 08:08:30.701][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-04-15 08:08:30.702][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-04-15 08:08:30.703][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-04-15 08:08:30.704][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-04-15 08:08:30.705][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-04-15 08:08:30.706][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-04-15 08:08:30.707][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-04-15 08:08:30.708][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-04-15 08:08:30.709][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-04-15 08:08:30.710][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-04-15 08:08:30.711][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-04-15 08:08:30.712][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-04-15 08:08:30.713][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-04-15 08:08:30.714][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-04-15 08:08:30.715][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-04-15 08:08:30.716][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-04-15 08:08:30.717][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-04-15 08:08:30.718][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-04-15 08:08:30.719][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-04-15 08:08:30.720][initialize] This is biodb version 1.6.1.
biodb.DEBUG[2023-04-15 08:08:30.721][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-15 08:08:30.721][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.723][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.724][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:30.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:30.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.728][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:30.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:30.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.733][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:30.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:30.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.737][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:30.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:30.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.742][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:30.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:30.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:30.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:30.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:30.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:30.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.755][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:30.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:30.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.759][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:30.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:30.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.764][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:30.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:30.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.768][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:30.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:30.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.773][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:30.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:30.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:30.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:30.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:30.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:30.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:30.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:30.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.790][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:30.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:30.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:08:30.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:30.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:30.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:30.800][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2023-04-15 08:08:30.801][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2023-04-15 08:08:30.803][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.804][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2023-04-15 08:08:30.824][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.825][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:08:30.826][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.827][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:08:30.828][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.828][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:08:30.829][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2023-04-15 08:08:30.830][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:08:30.831][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.831][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2023-04-15 08:08:30.832][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:08:30.833][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2023-04-15 08:08:30.833][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2023-04-15 08:08:30.833][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:30.834][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:30.835][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-04-15 08:08:30.835][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:30.836][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:30.837][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:08:30.837][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:30.838][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:30.839][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:08:30.839][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-04-15 08:08:30.839][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2023-04-15 08:08:30.840][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:08:30.841][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:08:30.841][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.842][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:30.843][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2023-04-15 08:08:30.844][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.845][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2023-04-15 08:08:30.846][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.846][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:08:30.847][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.848][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:08:30.849][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.849][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:08:30.850][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-15 08:08:30.851][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:08:30.851][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.852][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2023-04-15 08:08:30.853][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:08:30.853][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2023-04-15 08:08:30.853][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2023-04-15 08:08:30.853][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2023-04-15 08:08:30.853][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2023-04-15 08:08:30.853][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2023-04-15 08:08:30.853][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2023-04-15 08:08:30.854][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:30.855][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:08:30.856][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-04-15 08:08:30.856][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:30.857][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:30.858][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:08:30.858][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:30.859][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:30.860][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:08:30.861][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:08:30.861][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-04-15 08:08:30.861][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:08:30.862][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:08:30.863][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.863][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:30.864][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2023-04-15 08:08:30.865][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:30.866][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2023-04-15 08:08:30.867][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.868][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:08:30.868][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.869][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:08:30.870][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.870][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:08:30.871][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-15 08:08:30.872][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:08:30.873][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.873][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2023-04-15 08:08:30.874][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:08:30.875][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2023-04-15 08:08:30.875][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:08:30.875][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:08:30.875][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:08:30.875][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:08:30.875][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:08:30.875][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:08:30.875][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:08:30.875][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:08:30.875][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:08:30.875][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2023-04-15 08:08:30.875][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:08:30.875][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:08:30.875][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:08:30.875][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:30.876][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:08:30.876][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-15 08:08:30.876][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-15 08:08:30.877][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2023-04-15 08:08:30.878][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:30.878][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:30.879][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:08:30.879][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:30.880][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:30.881][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:08:30.881][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:08:30.881][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-04-15 08:08:30.881][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2023-04-15 08:08:30.882][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:08:30.883][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:08:30.884][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.884][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-04-15 08:08:30.885][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2023-04-15 08:08:30.887][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.887][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2023-04-15 08:08:30.888][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.889][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:08:30.890][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.890][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:08:30.891][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.892][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:08:30.892][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-15 08:08:30.893][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:08:30.894][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.895][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2023-04-15 08:08:30.895][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:08:30.896][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2023-04-15 08:08:30.896][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2023-04-15 08:08:30.897][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:08:30.898][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:08:30.898][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2023-04-15 08:08:30.899][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:30.900][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:30.900][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:08:30.901][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:08:30.902][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:08:30.902][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:08:30.903][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:08:30.903][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-04-15 08:08:30.903][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2023-04-15 08:08:30.904][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:08:30.904][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:08:30.905][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:08:30.906][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-04-15 08:08:30.907][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2023-04-15 08:08:30.908][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-04-15 08:08:30.909][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-04-15 08:08:30.910][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2023-04-15 08:08:30.911][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-04-15 08:08:30.912][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2023-04-15 08:08:30.919][super$initialize] Initialize connector ncbi.pubchem.comp.
biodb.DEBUG[2023-04-15 08:08:30.920][super$initialize] Register connector ncbi.pubchem.comp with the request scheduler
biodb.DEBUG[2023-04-15 08:08:30.921][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.comp.
biodb.DEBUG[2023-04-15 08:08:30.922][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2023-04-15 08:08:30.923][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2023-04-15 08:08:30.923][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2023-04-15 08:08:30.924][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2023-04-15 08:08:30.925][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2023-04-15 08:08:30.926][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2023-04-15 08:08:30.927][rule$addConnector] Connector "ncbi.pubchem.comp" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-04-15 08:08:30.940][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.comp for database class ncbi.pubchem.comp .
biodb.INFO [2023-04-15 08:08:30.943][biodb::testThat]
biodb.INFO [2023-04-15 08:08:30.943][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2023-04-15 08:08:30.944][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:30.945][biodb::testThat]
biodb.TRACE[2023-04-15 08:08:30.947][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-2-content.xml".
biodb.DEBUG[2023-04-15 08:08:30.948][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:08:30.950][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:08:30.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:30.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:30.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:30.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:30.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:30.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:30.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:30.962][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:30.963][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:30.964][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:30.964][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:30.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:30.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:30.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:30.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:30.968][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:30.969][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:30.970][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:30.970][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:30.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:30.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:30.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:30.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:30.974][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:30.975][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:30.976][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:30.976][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:30.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:30.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:30.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:30.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:30.980][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:30.981][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:30.982][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:30.982][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:30.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:30.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:30.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:30.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:30.986][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:30.987][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:30.988][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:30.988][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:30.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:30.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:30.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:30.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:30.992][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:30.993][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:30.993][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:30.994][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:30.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:30.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:30.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:30.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:30.998][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:30.999][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:30.999][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.000][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.001][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:31.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:31.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.004][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:31.004][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:31.005][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.006][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.007][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:31.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:31.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.010][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:31.010][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:31.011][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.012][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:31.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:31.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.015][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.016][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.017][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.017][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.021][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:31.022][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:31.023][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.023][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.024][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:31.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:31.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.027][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:31.028][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:31.028][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.029][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:31.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:31.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.033][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.034][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.034][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.035][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.036][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.039][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.039][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.040][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.041][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.042][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.045][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:31.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.050][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.053][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:31.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.067][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:31.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:31.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:31.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:31.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:31.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:31.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.075][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:31.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:31.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:31.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:31.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:31.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:31.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.083][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:31.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.086][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.092][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:31.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:31.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.094][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:31.122][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2.
biodb.TRACE[2023-04-15 08:08:31.124][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:31.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:31.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.127][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:31.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:31.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.129][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:31.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:31.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.132][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:31.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:31.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.135][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:31.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:31.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.138][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:31.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:31.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.141][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:31.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:31.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.150][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.176][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.195][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.195][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.196][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.197][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.205][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:31.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:31.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:31.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:31.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:31.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:31.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.213][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:31.214][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:31.214][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.215][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.216][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:31.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:31.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:31.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:31.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:31.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:31.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:31.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:31.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.232][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:31.232][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:31.233][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.234][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:31.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:31.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.242][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:31.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:31.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.245][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:31.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:31.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.248][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:31.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:31.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.250][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:31.251][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:31.252][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.252][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.253][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:31.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:31.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.260][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:31.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:31.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.263][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:31.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:31.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.266][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:31.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:31.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.269][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:31.269][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:31.270][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.271][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.271][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:31.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:31.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.285][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.288][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.291][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.292][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.293][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.293][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.294][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.301][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.306][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.309][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.310][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.310][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.311][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.312][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.327][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.327][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.328][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.329][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.345][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.346][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.346][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.347][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.363][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.364][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.365][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.365][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:31.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:31.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:31.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:31.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:31.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:31.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.381][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:31.382][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:31.383][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.384][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:31.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:31.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:31.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:31.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:31.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:31.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:31.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:31.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.400][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:31.400][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:31.401][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.402][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:31.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:31.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.410][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:31.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:31.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:31.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:31.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.415][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:31.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:31.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.418][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:31.419][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:31.419][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.420][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.421][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:31.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:31.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.436][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.437][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.438][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.438][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:31.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:31.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:31.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:31.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:31.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:31.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.454][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:31.455][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:31.456][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.456][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:31.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:31.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.464][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.465][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.466][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.466][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.470][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.470][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.471][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.472][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.475][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.476][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.477][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.477][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.481][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.481][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.482][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.483][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.486][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:31.487][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:31.487][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.488][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.491][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:31.492][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:31.493][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.493][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.501][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:31.502][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:31.503][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.503][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.507][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:31.507][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:31.508][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.509][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.512][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.513][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.513][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.514][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.517][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:31.518][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:31.519][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.519][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.522][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:31.523][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:31.524][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.525][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.528][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:31.529][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:31.529][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.530][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.533][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:31.534][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:31.534][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.535][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.538][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.539][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.540][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.540][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.544][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.544][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.545][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.546][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.549][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-65124-content.xml".
biodb.DEBUG[2023-04-15 08:08:31.550][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:08:31.551][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:08:31.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:31.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:31.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:31.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:31.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:31.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:31.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:31.562][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.562][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.563][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.564][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.568][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.569][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.569][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.570][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.574][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.575][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.575][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.576][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.580][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.581][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.581][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.582][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.583][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.586][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:31.587][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:31.587][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.588][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:31.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:31.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.592][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:31.593][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:31.593][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.594][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:31.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:31.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.598][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:31.598][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:31.599][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.600][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.601][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:31.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:31.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.604][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:31.604][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:31.605][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.606][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.606][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:31.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:31.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.609][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:31.610][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:31.611][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.611][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:31.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:31.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.615][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.616][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.617][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.617][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.621][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:31.622][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:31.623][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.624][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.625][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:31.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:31.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.627][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:31.628][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:31.629][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.629][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:31.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:31.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.633][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.634][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.635][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.635][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.639][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.640][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.640][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.641][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.645][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:31.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.653][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:31.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.659][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.662][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:31.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:31.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:31.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:31.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:31.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:31.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.670][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:31.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:31.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:31.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:31.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:31.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:31.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.679][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:31.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.687][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:31.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:31.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:31.718][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 65124.
biodb.TRACE[2023-04-15 08:08:31.723][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:31.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:31.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.727][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:31.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:31.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.729][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:31.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:31.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.732][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:31.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:31.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.735][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:31.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:31.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.738][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:31.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:31.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.741][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:31.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:31.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:31.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.798][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.798][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.799][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.800][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:31.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:31.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:31.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:31.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:31.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:31.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:31.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:31.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.817][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:31.818][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:31.818][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.819][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:31.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:31.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:31.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:31.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:31.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:31.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:31.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:31.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.836][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:31.837][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:31.837][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.838][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:31.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:31.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:31.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:31.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.849][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:31.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:31.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.852][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:31.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:31.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.854][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:31.855][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:31.856][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.857][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.857][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:31.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:31.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.865][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:31.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:31.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.867][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:31.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:31.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.870][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:31.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:31.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.873][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:31.874][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:31.874][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.875][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.876][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:31.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:31.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.883][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.886][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.888][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.891][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.892][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.893][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.893][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.894][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:31.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.901][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.904][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.907][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.910][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.910][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.911][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.912][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.912][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:31.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.922][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.928][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.929][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.929][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.930][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:31.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:31.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:31.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:31.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:31.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:31.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:31.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.951][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:31.952][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:31.952][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.953][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:31.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:31.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.969][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.970][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.970][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.971][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:31.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.987][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.987][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.988][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.989][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:31.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:31.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:31.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:31.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.005][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.005][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.006][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.007][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.015][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.023][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.024][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.025][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.025][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.042][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.042][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.043][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.044][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.044][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.052][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:32.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:32.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.055][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:32.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:32.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.058][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:32.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:32.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.061][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:32.062][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:32.062][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.063][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.064][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:32.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:32.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.072][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:32.073][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:32.073][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.074][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.077][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:32.078][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:32.079][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.080][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.083][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:32.084][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:32.085][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.085][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.089][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.090][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.090][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.091][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.095][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.096][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.096][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.097][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.101][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.101][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.102][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.103][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.106][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:32.107][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:32.108][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.109][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.112][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:32.113][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:32.114][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.115][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.118][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:32.119][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:32.120][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.124][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.128][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:32.129][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:32.129][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.130][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.134][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:32.135][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:32.135][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.136][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.140][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:32.140][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:32.141][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.142][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.145][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:32.146][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:32.147][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.148][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.151][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:32.152][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:32.153][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.153][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.157][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:32.158][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:32.158][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.159][ef$get] fields variable is a list.
biodb.INFO [2023-04-15 08:08:32.163][biodb::testThat]
biodb.INFO [2023-04-15 08:08:32.164][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2023-04-15 08:08:32.165][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:32.165][biodb::testThat]
biodb.DEBUG[2023-04-15 08:08:32.167][private$loadEntries] Creating entries from ids [2]: "2, 65124".
biodb.DEBUG[2023-04-15 08:08:32.173][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2023-04-15 08:08:32.175][cch$loadFileContent] Trying to load 2 files from cache: [2]: "2, 65124".
biodb.TRACE[2023-04-15 08:08:32.188][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2023-04-15 08:08:32.197][loadFileContents] Loaded 2 files from cache: [2]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/65124.xml".
biodb.DEBUG[2023-04-15 08:08:32.199][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:08:32.200][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2023-04-15 08:08:32.201][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:08:32.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:32.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:32.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:32.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:32.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:32.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:32.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:32.215][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:32.216][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:32.216][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.217][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:32.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:32.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.221][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:32.222][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:32.223][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.223][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:32.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:32.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.227][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:32.228][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:32.229][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.229][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:32.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:32.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.233][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.234][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.235][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.236][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.240][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.240][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.241][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.242][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.246][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.246][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.247][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.248][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.252][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:32.253][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:32.253][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.254][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.255][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:32.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:32.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.258][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:32.258][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:32.259][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.260][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.261][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:32.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:32.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.264][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:32.265][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:32.266][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.266][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:32.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:32.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.270][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:32.271][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:32.272][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.273][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:32.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:32.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.277][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:32.277][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:32.278][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.279][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.280][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:32.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:32.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.283][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:32.284][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:32.284][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.285][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:32.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:32.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.289][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:32.290][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:32.290][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.291][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.292][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:32.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:32.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.295][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:32.296][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:32.296][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.297][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:32.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:32.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.301][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:32.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.309][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:32.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:32.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.312][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:32.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:32.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:32.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:32.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.318][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:32.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.326][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:32.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.332][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.335][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:32.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:32.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:32.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:32.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:32.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:32.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.343][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:32.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:32.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:32.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:32.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.349][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:32.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:32.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:32.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:32.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:32.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:32.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:32.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:32.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:32.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:32.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:32.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:32.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:32.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:32.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:32.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:32.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:32.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:32.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:32.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:32.375][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:32.375][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:32.376][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.377][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:32.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:32.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.380][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:32.381][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:32.382][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.382][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:32.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:32.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.386][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:32.387][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:32.388][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.388][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:32.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:32.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.392][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.393][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.393][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.394][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.398][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.399][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.399][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.400][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.401][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.404][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.405][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.405][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.406][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.410][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:32.410][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:32.411][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.412][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.413][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:32.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:32.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.416][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:32.416][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:32.417][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.418][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.418][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:32.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:32.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.421][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:32.422][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:32.423][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.423][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.424][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:32.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:32.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.431][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:32.432][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:32.433][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.434][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:32.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:32.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.437][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:32.438][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:32.439][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.439][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.440][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:32.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:32.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.443][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:32.444][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:32.445][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.445][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:32.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:32.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.449][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:32.450][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:32.450][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.451][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.452][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:32.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:32.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.455][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:32.455][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:32.456][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.457][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.458][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:32.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:32.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.460][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:32.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:32.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.469][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:32.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:32.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:32.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:32.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:32.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:32.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.477][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:32.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:32.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.485][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:32.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:32.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.494][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:32.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:32.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:32.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:32.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:32.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:32.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.503][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:32.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:32.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:32.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:32.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:32.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:32.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:32.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:32.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.514][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:32.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:32.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:32.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:32.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:32.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:32.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:32.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:32.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:32.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:32.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:32.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:32.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:32.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:32.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:32.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:32.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:32.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:32.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:32.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:32.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:32.542][self$createEntryFromContent] Accession numbers: 2, 65124.
biodb.TRACE[2023-04-15 08:08:32.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-04-15 08:08:32.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-04-15 08:08:32.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:08:32.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:08:32.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:08:32.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:08:32.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-04-15 08:08:32.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-04-15 08:08:32.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:08:32.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:08:32.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:08:32.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:08:32.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-15 08:08:32.566][biodb::testThat]
biodb.INFO [2023-04-15 08:08:32.566][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2023-04-15 08:08:32.567][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:32.568][biodb::testThat]
biodb.TRACE[2023-04-15 08:08:32.570][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:32.570][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:32.571][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.572][ef$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:32.572][function(conn, opt)] Testing searchForEntries() with entry "2" and field "name".
biodb.TRACE[2023-04-15 08:08:32.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:32.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:32.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.584][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:32.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:32.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.587][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:32.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:32.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:32.590][function(conn, opt)] With value "(2-acetyloxy-3-carboxypropyl)-trimethylazanium".
biodb.DEBUG[2023-04-15 08:08:32.612][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2023-04-15 08:08:32.614][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:32.615][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2023-04-15 08:08:32.616][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:32.617][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2023-04-15 08:08:32.618][function(conn, opt)] With found IDs [5]: "87229113, 25217148, 450343, 450342, 2".
biodb.TRACE[2023-04-15 08:08:32.626][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:32.627][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:32.628][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.628][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.629][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:32.630][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:32.630][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.631][ef$get] fields variable is a list.
biodb.INFO [2023-04-15 08:08:32.632][biodb::testThat]
biodb.INFO [2023-04-15 08:08:32.633][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2023-04-15 08:08:32.634][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:32.634][biodb::testThat]
biodb.TRACE[2023-04-15 08:08:32.642][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:32.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:32.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.645][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:32.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:32.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.651][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:32.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:32.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:32.674][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2023-04-15 08:08:32.676][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:32.677][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2023-04-15 08:08:32.678][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:32.679][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.INFO [2023-04-15 08:08:32.688][biodb::testThat]
biodb.INFO [2023-04-15 08:08:32.688][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2023-04-15 08:08:32.689][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:32.690][biodb::testThat]
biodb.TRACE[2023-04-15 08:08:32.696][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:32.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:32.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.698][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:32.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:32.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:32.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:32.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.704][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:32.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:32.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.707][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:32.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:32.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.710][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:32.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:32.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.712][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:32.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:32.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.716][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:32.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:32.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.719][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:08:32.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:08:32.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.721][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:32.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:08:32.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.724][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:32.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:32.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.727][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:08:32.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:08:32.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.730][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:32.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:08:32.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:32.733][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:32.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:08:32.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:32.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-15 08:08:32.737][biodb::testThat]
biodb.INFO [2023-04-15 08:08:32.738][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2023-04-15 08:08:32.739][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:32.739][biodb::testThat]
biodb.INFO [2023-04-15 08:08:32.743][biodb::testThat]
biodb.INFO [2023-04-15 08:08:32.743][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2023-04-15 08:08:32.744][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:32.745][biodb::testThat]
biodb.INFO [2023-04-15 08:08:32.748][biodb::testThat]
biodb.INFO [2023-04-15 08:08:32.749][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2023-04-15 08:08:32.749][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:32.750][biodb::testThat]
biodb.DEBUG[2023-04-15 08:08:32.752][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/compound/2".
biodb.DEBUG[2023-04-15 08:08:32.930][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/compound/2.
biodb.INFO [2023-04-15 08:08:33.180][biodb::testThat]
biodb.INFO [2023-04-15 08:08:33.181][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2023-04-15 08:08:33.182][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:33.182][biodb::testThat]
biodb.DEBUG[2023-04-15 08:08:33.288][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?cid=2&t=l.
biodb.TRACE[2023-04-15 08:08:33.377][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:33.380][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:33.382][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:33.384][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:33.386][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.387][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.388][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:33.389][ef$get] fields variable is a list.
biodb.INFO [2023-04-15 08:08:33.390][biodb::testThat]
biodb.INFO [2023-04-15 08:08:33.391][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2023-04-15 08:08:33.391][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:33.392][biodb::testThat]
biodb.TRACE[2023-04-15 08:08:33.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:33.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:33.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:33.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:33.402][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:33.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:33.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:33.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:33.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:33.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:33.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:33.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:33.480][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2023-04-15 08:08:33.482][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:33.483][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2023-04-15 08:08:33.484][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:33.484][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2023-04-15 08:08:33.533][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2023-04-15 08:08:33.535][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:33.536][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2023-04-15 08:08:33.537][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:33.538][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.TRACE[2023-04-15 08:08:33.548][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-04-15 08:08:33.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-04-15 08:08:33.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:33.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:33.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:33.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:33.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:33.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:33.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:33.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:33.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:33.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:33.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:33.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:33.576][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:33.577][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:33.578][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2023-04-15 08:08:33.579][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:33.580][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2023-04-15 08:08:33.593][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2023-04-15 08:08:33.595][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:33.596][cch$loadFileContent] Trying to load 1 files from cache: [1]: "43af01c58cfaf2fe3448c11004a21986".
biodb.TRACE[2023-04-15 08:08:33.597][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:33.600][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.content".
biodb.DEBUG[2023-04-15 08:08:33.799][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2023-04-15 08:08:33.802][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:33.802][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5a651e56a091cb06291b388106735d55".
biodb.TRACE[2023-04-15 08:08:33.803][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:33.804][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.content".
biodb.DEBUG[2023-04-15 08:08:33.822][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.27[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2023-04-15 08:08:33.824][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:33.825][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d3d0da2755d093596dae584b7698bc73".
biodb.TRACE[2023-04-15 08:08:33.826][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:33.827][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.content".
biodb.TRACE[2023-04-15 08:08:33.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:33.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:33.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:33.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:33.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:33.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:33.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:33.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:33.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:33.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:33.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:33.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:33.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:33.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:33.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:33.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:33.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:33.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:33.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:33.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:33.859][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:33.861][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:33.862][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1384af38a786fc6768cd7f1e796d96ab".
biodb.TRACE[2023-04-15 08:08:33.863][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:33.864][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.content".
biodb.DEBUG[2023-04-15 08:08:33.877][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2023-04-15 08:08:33.879][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:33.880][cch$loadFileContent] Trying to load 1 files from cache: [1]: "983d3a3af3901d23b5d919d379c6bd32".
biodb.TRACE[2023-04-15 08:08:33.881][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:33.882][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.content".
biodb.DEBUG[2023-04-15 08:08:33.896][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2023-04-15 08:08:33.898][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:33.899][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9a9be2efcff8c77fef3b8a87f25b444".
biodb.TRACE[2023-04-15 08:08:33.900][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:33.901][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.content".
biodb.DEBUG[2023-04-15 08:08:33.919][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358309[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2023-04-15 08:08:33.921][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:33.922][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6d4e46c6f0a021fc6e92911d60537192".
biodb.TRACE[2023-04-15 08:08:33.923][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:33.924][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.content".
biodb.TRACE[2023-04-15 08:08:33.935][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-04-15 08:08:33.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-04-15 08:08:33.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:33.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-15 08:08:33.942][biodb::testThat]
biodb.INFO [2023-04-15 08:08:33.942][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2023-04-15 08:08:33.943][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:33.944][biodb::testThat]
biodb.TRACE[2023-04-15 08:08:33.946][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-04-15 08:08:33.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-04-15 08:08:33.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:33.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:33.948][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-04-15 08:08:33.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-04-15 08:08:33.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:33.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:33.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:33.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:33.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:33.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:33.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:33.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:33.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:33.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:33.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:33.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:33.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:33.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:33.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:33.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:33.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:33.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:33.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:33.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:33.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:33.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:33.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:33.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:33.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:33.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:34.006][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:34.008][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:34.009][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2023-04-15 08:08:34.010][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:34.010][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2023-04-15 08:08:34.012][private$loadEntries] Creating entries from ids [3]: "167529381, 167522372, 167522082".
biodb.DEBUG[2023-04-15 08:08:34.012][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2023-04-15 08:08:34.013][cch$loadFileContent] Trying to load 3 files from cache: [3]: "167529381, 167522372, 167522082".
biodb.TRACE[2023-04-15 08:08:34.014][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2023-04-15 08:08:34.016][loadFileContents] Loaded 3 files from cache: [3]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167529381.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167522372.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167522082.xml".
biodb.DEBUG[2023-04-15 08:08:34.017][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:08:34.018][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2023-04-15 08:08:34.019][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:08:34.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:34.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:34.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:34.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:34.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:34.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:34.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:34.028][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:34.029][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:34.030][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.030][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:34.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:34.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.034][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:34.035][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:34.036][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.036][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:34.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:34.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.040][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:34.041][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:34.041][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.042][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:34.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:34.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.046][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:34.046][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:34.047][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.048][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:34.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:34.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.051][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:34.052][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:34.053][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.053][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:34.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:34.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.057][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:34.058][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:34.059][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.059][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:34.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:34.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.063][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:34.064][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:34.064][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.065][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.066][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:34.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:34.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.069][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:34.069][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:34.070][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.071][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.072][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:34.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:34.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.074][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:34.075][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:34.076][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.076][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.077][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:34.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:34.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.080][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:34.081][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:34.082][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.082][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:34.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:34.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.086][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:34.086][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:34.087][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.088][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.089][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:34.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:34.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.092][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:34.092][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:34.093][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.094][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:34.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:34.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.097][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:34.098][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:34.099][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.099][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.100][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:34.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:34.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.103][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:34.104][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:34.104][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.105][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.106][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:34.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:34.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.109][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:34.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:34.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:34.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:34.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:34.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:34.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.117][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:34.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:34.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:34.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:34.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:34.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:34.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.125][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:34.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:34.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:34.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:34.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.131][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:34.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:34.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.134][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:34.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:34.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:34.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:34.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:34.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:34.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.142][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:34.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:34.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:34.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:34.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:34.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:34.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.150][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:34.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:34.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.153][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:34.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:34.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:34.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:34.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:34.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:34.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:34.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:34.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:34.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:34.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:34.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:34.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:34.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:34.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:34.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:34.185][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:34.186][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:34.187][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.187][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:34.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:34.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.191][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:34.192][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:34.192][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.193][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:34.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:34.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.196][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:34.197][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:34.198][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.198][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:34.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:34.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.202][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:34.203][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:34.203][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.204][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:34.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:34.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.208][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:34.208][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:34.209][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.210][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:34.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:34.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.213][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:34.214][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:34.214][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.215][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:34.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:34.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.219][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:34.219][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:34.220][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.221][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.222][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:34.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:34.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.224][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:34.225][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:34.226][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.226][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.227][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:34.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:34.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.230][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:34.231][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:34.231][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.232][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:34.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:34.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.236][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:34.237][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:34.237][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.238][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:34.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:34.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.242][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:34.242][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:34.243][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.244][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.245][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:34.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:34.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.247][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:34.248][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:34.249][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.249][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:34.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:34.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.253][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:34.254][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:34.254][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.255][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.256][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:34.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:34.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.259][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:34.259][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:34.260][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.261][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.262][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:34.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:34.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.265][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:34.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:34.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:34.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:34.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:34.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:34.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.273][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:34.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:34.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:34.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:34.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:34.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:34.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.281][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:34.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:34.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:34.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:34.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:34.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:34.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.289][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:34.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:34.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:34.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:34.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:34.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:34.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.297][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:34.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:34.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:34.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:34.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:34.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:34.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:34.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:34.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.309][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:34.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:34.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:34.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:34.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:34.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:34.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:34.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:34.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:34.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:34.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:34.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:34.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:34.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:34.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:34.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:34.337][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:34.338][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:34.338][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.339][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:34.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:34.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.343][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:34.343][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:34.344][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.345][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:34.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:34.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.348][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:34.349][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:34.350][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.350][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:34.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:34.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.354][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:34.355][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:34.356][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.356][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:34.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:34.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.360][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:34.361][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:34.361][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.362][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:34.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:34.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.366][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:34.366][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:34.367][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.368][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:34.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:34.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.371][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:34.372][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:34.373][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.378][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.379][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:34.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:34.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.382][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:34.382][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:34.383][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.384][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.385][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:34.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:34.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.387][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:34.388][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:34.389][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.389][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:34.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:34.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.393][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:34.394][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:34.394][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.395][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:34.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:34.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.398][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:34.399][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:34.400][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.400][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.401][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:34.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:34.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.404][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:34.405][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:34.405][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.406][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:34.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:34.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.410][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:34.410][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:34.411][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.412][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.412][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:34.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:34.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.415][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:34.416][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:34.417][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.417][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.418][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:34.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:34.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.421][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:34.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:34.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:34.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:34.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:34.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:34.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.429][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:34.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:34.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:34.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:34.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:34.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:34.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.438][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:34.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:34.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:34.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:34.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:34.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:34.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.446][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:34.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:34.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:34.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:34.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:34.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:34.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.455][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:34.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:34.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:34.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:34.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:34.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:34.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.463][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:34.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:34.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.466][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.469][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:34.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:34.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:34.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:34.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:34.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:34.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:34.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:34.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:34.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:34.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:34.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:34.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:34.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:34.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:34.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:34.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:34.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:34.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:34.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:34.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:34.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:34.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:34.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:34.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:34.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:34.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:34.511][self$createEntryFromContent] Accession numbers: 167529381, 167522372, 167522082.
biodb.DEBUG[2023-04-15 08:08:34.512][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:34.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:34.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:34.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:34.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:34.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:34.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:34.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:34.521][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.526][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:34.527][private$selectFields]
biodb.TRACE[2023-04-15 08:08:34.528][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:34.528][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:34.529][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:34.530][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.531][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.531][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.532][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.533][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.533][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.534][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.535][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.535][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:34.536][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:34.537][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.538][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.538][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.539][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.540][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:34.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.543][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.555][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529381].
biodb.DEBUG[2023-04-15 08:08:34.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:34.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:34.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:34.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:34.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:34.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:34.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:34.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.567][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.570][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:34.570][private$selectFields]
biodb.TRACE[2023-04-15 08:08:34.571][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:34.571][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:34.572][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:34.573][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.574][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.579][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.580][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.581][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.582][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.582][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.583][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.584][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:34.585][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:34.585][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.586][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.587][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.587][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.588][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:34.589][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.591][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.597][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167522372].
biodb.DEBUG[2023-04-15 08:08:34.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:34.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:34.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:34.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:34.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:34.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:34.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:34.605][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.608][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.611][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:34.612][private$selectFields]
biodb.TRACE[2023-04-15 08:08:34.612][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:34.613][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:34.613][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:34.614][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.615][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.616][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.616][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.617][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.618][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.618][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.619][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.620][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:34.620][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:34.621][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.622][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.622][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.623][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.624][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:34.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.627][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.630][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:34.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:34.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:34.633][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167522082].
biodb.DEBUG[2023-04-15 08:08:34.634][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:34.634][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:34.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:34.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:34.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:34.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:34.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:34.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:34.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:34.667][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:34.669][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:08:34.670][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:08:34.671][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2023-04-15 08:08:34.853][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:08:34.854][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:08:34.855][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:08:34.857][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:08:35.165][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:08:35.169][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content"
biodb.TRACE[2023-04-15 08:08:35.173][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.request"
biodb.DEBUG[2023-04-15 08:08:35.174][private$loadEntries] Creating entries from ids [3]: "167514507, 167491345, 167438444".
biodb.DEBUG[2023-04-15 08:08:35.175][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2023-04-15 08:08:35.176][cch$loadFileContent] Trying to load 3 files from cache: [3]: "167514507, 167491345, 167438444".
biodb.TRACE[2023-04-15 08:08:35.177][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2023-04-15 08:08:35.178][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:08:35.179][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:08:35.180][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:08:35.180][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:08:35.181][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-04-15 08:08:35.182][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2023-04-15 08:08:35.183][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167514507,167491345,167438444/XML".
biodb.DEBUG[2023-04-15 08:08:35.193][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:08:35.194][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:08:35.195][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167514507,167491345,167438444/XML".
biodb.TRACE[2023-04-15 08:08:35.347][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167514507,167491345,167438444/XML).
biodb.TRACE[2023-04-15 08:08:35.627][private$doSaveContentToFile] Saving to cache [3]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167514507.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167491345.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167438444.xml"
biodb.DEBUG[2023-04-15 08:08:35.629][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:08:35.630][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2023-04-15 08:08:35.631][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:08:35.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:35.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:35.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:35.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:35.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:35.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:35.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:35.641][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:35.642][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:35.643][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.643][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:35.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:35.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.647][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:35.648][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:35.649][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.649][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.650][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:35.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:35.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.653][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:35.654][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:35.654][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.655][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:35.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:35.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.659][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:35.660][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:35.660][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.661][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:35.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:35.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.665][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:35.666][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:35.666][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.667][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:35.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:35.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.671][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:35.671][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:35.672][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.673][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:35.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:35.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.676][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:35.677][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:35.678][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.679][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.679][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:35.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:35.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.682][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:35.683][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:35.684][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.684][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.685][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:35.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:35.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.688][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:35.689][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:35.689][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.690][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:35.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:35.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.694][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:35.695][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:35.695][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.696][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:35.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:35.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.708][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:35.709][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:35.710][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.711][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.712][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:35.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:35.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.714][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:35.715][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:35.716][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.716][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:35.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:35.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.720][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:35.721][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:35.721][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.722][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.723][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:35.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:35.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.726][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:35.727][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:35.727][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.728][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.729][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:35.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:35.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.732][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:35.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:35.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:35.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:35.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:35.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:35.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.740][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:35.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:35.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:35.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:35.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:35.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:35.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.770][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:35.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:35.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:35.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:35.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:35.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:35.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.779][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:35.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:35.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.781][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:35.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:35.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.784][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:35.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:35.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.787][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:35.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:35.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:35.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:35.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:35.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:35.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.795][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:35.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:35.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:35.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:35.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:35.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:35.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:35.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:35.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:35.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:35.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:35.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:35.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:35.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:35.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:35.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:35.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:35.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:35.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:35.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:35.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:35.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:35.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:35.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:35.827][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:35.828][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:35.829][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.830][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:35.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:35.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.833][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:35.834][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:35.835][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.835][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:35.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:35.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.839][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:35.840][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:35.841][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.841][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:35.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:35.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.845][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:35.846][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:35.847][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.847][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:35.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:35.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.851][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:35.852][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:35.853][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.853][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:35.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:35.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.857][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:35.858][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:35.858][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.859][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:35.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:35.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.863][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:35.864][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:35.864][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.865][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.866][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:35.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:35.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.869][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:35.870][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:35.870][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.871][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.872][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:35.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:35.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.875][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:35.875][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:35.876][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.877][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:35.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:35.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.881][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:35.881][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:35.882][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.883][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:35.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:35.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.886][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:35.887][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:35.888][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.888][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.889][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:35.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:35.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.892][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:35.893][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:35.894][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.894][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:35.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:35.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.898][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:35.899][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:35.900][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.900][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.906][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:35.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:35.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.910][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:35.910][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:35.911][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.912][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.913][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:35.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:35.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.916][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:35.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:35.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:35.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:35.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:35.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:35.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.924][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:35.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:35.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:35.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:35.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:35.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:35.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.932][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:35.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:35.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:35.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:35.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.938][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:35.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:35.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.940][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:35.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:35.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:35.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:35.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:35.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:35.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.949][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:35.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:35.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:35.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:35.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:35.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:35.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.957][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:35.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:35.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:35.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:35.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:35.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:35.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:35.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:35.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:35.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:35.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:35.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:35.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:35.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:35.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:35.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:35.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:35.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:35.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:35.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:35.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:35.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:35.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:35.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:35.989][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:35.990][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:35.990][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.991][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:35.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:35.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.995][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:35.996][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:35.996][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:35.997][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:35.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:35.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:35.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.001][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.002][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.002][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.003][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.007][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.008][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.008][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.009][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.013][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.013][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.014][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.015][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.019][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.019][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.020][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.021][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.025][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:36.025][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:36.026][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.027][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.028][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:36.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:36.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.031][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:36.031][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:36.032][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.033][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.034][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:36.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:36.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.036][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:36.037][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:36.038][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.038][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.039][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:36.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:36.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.042][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:36.043][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:36.044][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.044][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:36.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:36.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.048][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:36.049][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:36.050][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.050][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.051][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:36.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:36.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.054][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:36.055][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:36.056][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.056][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:36.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:36.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.060][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:36.061][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:36.062][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.062][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.063][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:36.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:36.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.066][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:36.067][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:36.067][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.068][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.069][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:36.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:36.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.072][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:36.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.081][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:36.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.086][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.089][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:36.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.098][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:36.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.106][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:36.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:36.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:36.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.125][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:36.168][self$createEntryFromContent] Accession numbers: 167514507, 167491345, 167438444.
biodb.DEBUG[2023-04-15 08:08:36.185][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:36.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:36.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:36.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:36.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:36.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:36.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:36.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:36.210][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.215][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:36.216][private$selectFields]
biodb.TRACE[2023-04-15 08:08:36.217][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:36.217][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:36.218][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:36.219][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.219][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.220][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.221][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.222][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.222][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.223][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.224][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.224][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:36.225][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:36.226][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.226][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.227][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.228][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.229][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:36.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.238][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167514507].
biodb.DEBUG[2023-04-15 08:08:36.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:36.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:36.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:36.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:36.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:36.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:36.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:36.247][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.252][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:36.253][private$selectFields]
biodb.TRACE[2023-04-15 08:08:36.253][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:36.254][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:36.255][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:36.256][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.256][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.257][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.258][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.258][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.259][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.260][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.260][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.261][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:36.262][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:36.262][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.263][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.264][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.265][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.265][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:36.266][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.272][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.275][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167491345].
biodb.DEBUG[2023-04-15 08:08:36.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:36.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:36.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:36.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:36.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:36.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:36.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:36.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.289][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:36.290][private$selectFields]
biodb.TRACE[2023-04-15 08:08:36.290][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:36.291][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:36.292][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:36.292][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.293][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.294][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.294][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.295][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.296][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.296][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.297][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.298][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:36.298][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:36.299][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.300][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.300][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.301][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.307][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:36.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.317][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167438444].
biodb.DEBUG[2023-04-15 08:08:36.317][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:36.318][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-04-15 08:08:36.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:36.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:36.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:36.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:36.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:36.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:36.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:36.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:36.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:36.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:36.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:36.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:36.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:36.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:36.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:36.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:36.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:36.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:36.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:36.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:36.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:36.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:36.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:36.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:36.411][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:36.414][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:36.414][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2023-04-15 08:08:36.415][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:36.416][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2023-04-15 08:08:36.418][private$loadEntries] Creating entries from ids [3]: "167523845, 167523844, 167523841".
biodb.DEBUG[2023-04-15 08:08:36.418][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2023-04-15 08:08:36.420][cch$loadFileContent] Trying to load 3 files from cache: [3]: "167523845, 167523844, 167523841".
biodb.TRACE[2023-04-15 08:08:36.420][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2023-04-15 08:08:36.423][loadFileContents] Loaded 3 files from cache: [3]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167523845.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167523844.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167523841.xml".
biodb.DEBUG[2023-04-15 08:08:36.423][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:08:36.424][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2023-04-15 08:08:36.425][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:08:36.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:36.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:36.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:36.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:36.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:36.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:36.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:36.436][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.436][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.437][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.438][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.441][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.442][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.443][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.444][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.447][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.448][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.449][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.449][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.453][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.454][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.455][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.455][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.459][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.460][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.461][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.461][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.465][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.466][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.467][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.467][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.471][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:36.472][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:36.472][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.473][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.474][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:36.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:36.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.477][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:36.478][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:36.478][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.479][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.480][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:36.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:36.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.483][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:36.483][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:36.484][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.485][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:36.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:36.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.489][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:36.489][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:36.490][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.491][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:36.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:36.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.494][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:36.500][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:36.501][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.502][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.503][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:36.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:36.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.506][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:36.507][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:36.507][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.508][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:36.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:36.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.512][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:36.512][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:36.513][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.514][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.515][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:36.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:36.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.517][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:36.518][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:36.519][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.519][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.520][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:36.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:36.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.523][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:36.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.531][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:36.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.540][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:36.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.548][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:36.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.556][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:36.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.565][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:36.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:36.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.571][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:36.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:36.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:36.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:36.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:36.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:36.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:36.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:36.597][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.598][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.599][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.599][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.603][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.604][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.605][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.605][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.609][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.610][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.610][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.611][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.615][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.616][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.616][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.617][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.621][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.622][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.622][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.623][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.627][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.628][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.628][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.629][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.633][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:36.633][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:36.634][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.635][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.636][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:36.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:36.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.639][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:36.639][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:36.640][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.641][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.641][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:36.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:36.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.644][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:36.645][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:36.646][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.646][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:36.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:36.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.650][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:36.651][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:36.652][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.652][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:36.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:36.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.656][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:36.657][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:36.657][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.658][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.659][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:36.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:36.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.662][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:36.663][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:36.663][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.664][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:36.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:36.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.668][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:36.669][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:36.669][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.670][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.671][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:36.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:36.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.674][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:36.674][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:36.675][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.676][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.677][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:36.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:36.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.680][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:36.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.688][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:36.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.696][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:36.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.740][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:36.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.749][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:36.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:36.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:36.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.760][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.763][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:36.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:36.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:36.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:36.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:36.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:36.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:36.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:36.790][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.790][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.791][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.792][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.796][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.797][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.797][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.798][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.802][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.803][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.803][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.804][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.808][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.809][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.809][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.810][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.814][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.815][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.815][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.816][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.820][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.821][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.821][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.822][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.826][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:36.827][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:36.828][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.828][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.829][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:36.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:36.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.832][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:36.833][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:36.834][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.834][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.835][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:36.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:36.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.838][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:36.839][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:36.840][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.840][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:36.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:36.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.844][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:36.845][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:36.846][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.846][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:36.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:36.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.850][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:36.851][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:36.851][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.852][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.853][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:36.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:36.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.856][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:36.857][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:36.857][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.858][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:36.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:36.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.862][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:36.863][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:36.863][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.864][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.865][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:36.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:36.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.868][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:36.869][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:36.869][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.870][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.871][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:36.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:36.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.874][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:36.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:36.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.882][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:36.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:36.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.891][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:36.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:36.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.899][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:36.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:36.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.908][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:36.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:36.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.916][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:36.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:36.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.928][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:36.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:36.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:36.971][self$createEntryFromContent] Accession numbers: 167523845, 167523844, 167523841.
biodb.DEBUG[2023-04-15 08:08:36.972][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:36.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:36.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:36.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:36.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:36.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:36.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:36.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:36.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.986][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:36.987][private$selectFields]
biodb.TRACE[2023-04-15 08:08:36.988][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:36.989][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:36.989][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:36.990][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.991][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.991][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.992][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.993][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.993][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.994][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.995][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:36.996][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:36.996][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:36.997][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.998][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:36.998][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:36.999][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.000][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:37.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.003][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.006][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.009][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523845].
biodb.DEBUG[2023-04-15 08:08:37.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:37.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:37.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:37.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:37.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:37.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:37.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:37.018][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.021][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.024][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:37.024][private$selectFields]
biodb.TRACE[2023-04-15 08:08:37.025][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:37.026][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:37.026][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:37.027][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.028][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.029][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.029][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.030][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.031][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.031][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.032][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.033][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:37.033][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:37.034][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.035][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.036][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.036][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.037][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:37.038][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.041][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.043][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.046][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523844].
biodb.DEBUG[2023-04-15 08:08:37.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:37.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:37.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:37.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:37.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:37.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:37.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:37.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.061][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:37.062][private$selectFields]
biodb.TRACE[2023-04-15 08:08:37.062][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:37.063][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:37.064][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:37.064][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.065][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.066][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.066][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.067][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.068][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.069][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.069][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.070][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:37.071][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:37.071][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.072][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.073][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.073][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.074][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:37.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.078][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.083][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523841].
biodb.DEBUG[2023-04-15 08:08:37.084][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:37.085][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:37.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:37.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:37.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:37.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:37.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:37.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:37.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:37.117][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:37.119][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:08:37.120][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:08:37.121][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2023-04-15 08:08:37.202][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:08:37.203][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:08:37.206][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:08:37.208][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:08:37.340][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:08:37.344][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content"
biodb.TRACE[2023-04-15 08:08:37.351][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.request"
biodb.DEBUG[2023-04-15 08:08:37.353][private$loadEntries] Creating entries from ids [3]: "167527736, 167513889, 167510581".
biodb.DEBUG[2023-04-15 08:08:37.353][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2023-04-15 08:08:37.355][cch$loadFileContent] Trying to load 3 files from cache: [3]: "167527736, 167513889, 167510581".
biodb.TRACE[2023-04-15 08:08:37.355][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2023-04-15 08:08:37.356][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:08:37.357][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:08:37.358][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:08:37.358][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:08:37.359][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-04-15 08:08:37.371][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2023-04-15 08:08:37.372][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167527736,167513889,167510581/XML".
biodb.DEBUG[2023-04-15 08:08:37.374][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:08:37.375][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:08:37.376][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167527736,167513889,167510581/XML".
biodb.TRACE[2023-04-15 08:08:37.488][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167527736,167513889,167510581/XML).
biodb.TRACE[2023-04-15 08:08:37.761][private$doSaveContentToFile] Saving to cache [3]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167527736.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167513889.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167510581.xml"
biodb.DEBUG[2023-04-15 08:08:37.762][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:08:37.763][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2023-04-15 08:08:37.764][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:08:37.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:37.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:37.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:37.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:37.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:37.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:37.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:37.775][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:37.776][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:37.776][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.777][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:37.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:37.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.781][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:37.790][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:37.791][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.792][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:37.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:37.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.796][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:37.797][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:37.798][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.799][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:37.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:37.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.802][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:37.803][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:37.804][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.805][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:37.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:37.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.808][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:37.809][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:37.810][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.811][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:37.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:37.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.814][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:37.815][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:37.816][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.817][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:37.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:37.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.820][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:37.821][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:37.822][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.822][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.823][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:37.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:37.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.826][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:37.827][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:37.828][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.828][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.829][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:37.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:37.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.832][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:37.833][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:37.834][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.834][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:37.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:37.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.838][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:37.839][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:37.839][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.840][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:37.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:37.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.844][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:37.845][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:37.845][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.846][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.847][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:37.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:37.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.850][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:37.851][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:37.851][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.852][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:37.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:37.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.856][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:37.857][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:37.857][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.858][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.859][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:37.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:37.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.862][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:37.863][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:37.863][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.864][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.865][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:37.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:37.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.868][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:37.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:37.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:37.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:37.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:37.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:37.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.876][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:37.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:37.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:37.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:37.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:37.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:37.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.885][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:37.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:37.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:37.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:37.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:37.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:37.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.894][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:37.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:37.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.896][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:37.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:37.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:37.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:37.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.902][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:37.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:37.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:37.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:37.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:37.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:37.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.911][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:37.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:37.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.916][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:37.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:37.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:37.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:37.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:37.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:37.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:37.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:37.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:37.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:37.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:37.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:37.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:37.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:37.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:37.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:37.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:37.943][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:37.944][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:37.944][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.945][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:37.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:37.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.949][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:37.950][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:37.950][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.951][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:37.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:37.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.955][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:37.956][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:37.956][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.957][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:37.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:37.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.961][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:37.962][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:37.962][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.963][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:37.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:37.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.967][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:37.968][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:37.968][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.969][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:37.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:37.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.973][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:37.974][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:37.974][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.975][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:37.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:37.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.979][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:37.980][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:37.980][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.981][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.982][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:37.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:37.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.985][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:37.986][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:37.986][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.987][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.988][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:37.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:37.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.991][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:37.992][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:37.992][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.993][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:37.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:37.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:37.997][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:37.997][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:37.998][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:37.999][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:38.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:38.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.003][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:38.003][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:38.004][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.005][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.006][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:38.006][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:38.007][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.008][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:38.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:38.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.012][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:38.012][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:38.017][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.019][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.020][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:38.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:38.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.024][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:38.024][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:38.025][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.026][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.027][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:38.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:38.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.030][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:38.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.038][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:38.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.053][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:38.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.063][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:38.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.074][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:38.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.083][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:38.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:38.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.087][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:38.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:38.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:38.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:38.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:38.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:38.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:38.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:38.122][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.123][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.124][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.125][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.129][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.130][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.131][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.132][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.136][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.137][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.138][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.138][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.143][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.144][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.144][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.145][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.149][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.150][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.151][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.151][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.156][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.156][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.157][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.158][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.162][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:38.163][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:38.163][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.164][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.165][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:38.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:38.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.168][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:38.169][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:38.170][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.171][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.172][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:38.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:38.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.175][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:38.176][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:38.176][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.177][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.178][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:38.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:38.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.181][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:38.182][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:38.183][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.184][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:38.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:38.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.188][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:38.189][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:38.190][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.190][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.191][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:38.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:38.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.194][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:38.195][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:38.196][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.197][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:38.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:38.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.201][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:38.202][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:38.202][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.203][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.204][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:38.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:38.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.207][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:38.208][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:38.209][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.210][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.211][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:38.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:38.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.214][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:38.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.223][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:38.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.232][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:38.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.241][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:38.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.250][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:38.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.259][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:38.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:38.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.262][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:38.321][self$createEntryFromContent] Accession numbers: 167527736, 167513889, 167510581.
biodb.DEBUG[2023-04-15 08:08:38.322][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:38.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:38.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:38.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:38.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:38.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:38.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:38.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:38.331][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.337][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:38.337][private$selectFields]
biodb.TRACE[2023-04-15 08:08:38.338][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:38.339][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:38.339][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:38.340][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.341][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.342][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.342][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.343][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.344][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.344][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.345][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.346][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:38.346][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:38.347][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.348][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.349][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.349][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.350][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:38.351][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.359][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167527736].
biodb.DEBUG[2023-04-15 08:08:38.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:38.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:38.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:38.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:38.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:38.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:38.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:38.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.374][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:38.375][private$selectFields]
biodb.TRACE[2023-04-15 08:08:38.375][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:38.376][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:38.377][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:38.377][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.378][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.379][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.379][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.380][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.381][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.382][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.382][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.383][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:38.384][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:38.385][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.385][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.386][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.387][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.387][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:38.388][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.391][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.394][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.397][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167513889].
biodb.DEBUG[2023-04-15 08:08:38.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:38.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:38.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:38.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:38.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:38.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:38.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:38.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.412][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:38.412][private$selectFields]
biodb.TRACE[2023-04-15 08:08:38.413][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:38.414][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:38.414][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:38.415][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.416][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.416][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.417][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.418][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.418][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.419][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.420][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.421][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:38.421][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:38.422][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.423][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.423][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.424][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.425][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:38.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.428][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.434][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167510581].
biodb.DEBUG[2023-04-15 08:08:38.435][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:38.436][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-04-15 08:08:38.441][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-04-15 08:08:38.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-04-15 08:08:38.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.444][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-04-15 08:08:38.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-04-15 08:08:38.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-15 08:08:38.448][biodb::testThat]
biodb.INFO [2023-04-15 08:08:38.449][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2023-04-15 08:08:38.449][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:38.450][biodb::testThat]
biodb.TRACE[2023-04-15 08:08:38.452][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-04-15 08:08:38.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-04-15 08:08:38.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.455][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-04-15 08:08:38.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-04-15 08:08:38.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:38.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:38.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:38.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:38.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:38.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:38.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:38.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:38.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:38.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:38.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:38.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:38.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:38.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:38.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:38.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:38.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:38.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:38.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:38.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:38.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:38.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:38.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:38.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:38.519][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364:204.2430636[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:38.521][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:38.522][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aa9cb23a1eb4b2596e7c242b1c35f744".
biodb.TRACE[2023-04-15 08:08:38.523][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:38.525][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.content".
biodb.DEBUG[2023-04-15 08:08:38.526][private$loadEntries] Creating entries from ids [3]: "167510855, 167430457, 167253771".
biodb.DEBUG[2023-04-15 08:08:38.526][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2023-04-15 08:08:38.528][cch$loadFileContent] Trying to load 3 files from cache: [3]: "167510855, 167430457, 167253771".
biodb.TRACE[2023-04-15 08:08:38.529][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2023-04-15 08:08:38.531][loadFileContents] Loaded 3 files from cache: [3]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167510855.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167430457.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167253771.xml".
biodb.DEBUG[2023-04-15 08:08:38.532][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:08:38.533][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2023-04-15 08:08:38.533][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:08:38.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:38.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:38.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:38.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:38.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:38.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:38.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:38.544][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.545][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.545][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.546][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.550][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.551][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.551][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.552][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.556][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.557][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.557][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.558][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.562][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.563][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.563][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.564][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.568][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.569][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.570][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.570][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.574][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.575][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.576][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.576][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.580][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:38.581][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:38.581][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.582][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.583][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:38.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:38.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.586][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:38.587][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:38.588][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.588][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.589][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:38.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:38.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.592][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:38.593][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:38.594][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.594][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:38.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:38.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.598][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:38.599][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:38.600][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.600][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:38.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:38.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.604][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:38.605][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:38.606][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.606][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.607][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:38.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:38.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.610][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:38.611][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:38.611][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.612][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:38.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:38.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.616][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:38.617][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:38.617][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.618][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.619][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:38.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:38.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.622][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:38.623][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:38.623][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.624][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.625][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:38.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:38.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.628][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:38.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.634][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.636][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:38.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.645][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:38.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.650][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.653][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:38.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.659][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.662][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:38.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.670][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:38.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:38.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.676][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.681][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:38.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:38.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:38.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:38.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:38.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:38.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:38.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:38.702][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.703][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.704][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.704][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.708][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.709][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.710][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.710][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.714][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.715][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.716][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.716][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.720][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.721][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.721][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.722][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.726][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.727][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.727][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.733][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.738][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.739][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.740][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.740][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.741][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.744][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:38.745][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:38.746][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.746][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.747][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:38.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:38.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.750][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:38.751][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:38.751][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.752][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.753][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:38.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:38.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.756][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:38.757][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:38.757][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.758][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.759][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:38.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:38.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.762][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:38.763][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:38.763][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.764][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:38.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:38.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.768][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:38.769][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:38.769][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.770][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.771][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:38.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:38.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.774][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:38.774][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:38.775][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.776][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:38.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:38.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.780][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:38.780][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:38.781][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.782][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.783][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:38.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:38.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.786][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:38.786][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:38.787][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.788][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.789][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:38.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:38.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.792][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:38.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.800][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:38.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.809][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:38.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.817][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:38.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.826][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:38.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.834][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:38.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:38.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:38.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:38.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:38.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:38.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:38.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:38.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:38.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:38.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:38.866][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.867][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.868][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.869][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:38.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:38.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.872][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.873][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.874][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.875][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.878][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.879][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.880][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.881][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.884][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.885][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.886][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.887][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.891][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.891][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.892][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.893][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.897][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.897][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.898][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.899][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.903][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:38.903][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:38.904][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.905][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.906][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:38.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:38.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.908][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:38.909][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:38.910][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.911][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.912][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:38.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:38.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.914][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:38.915][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:38.916][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.916][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:38.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:38.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.920][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:38.921][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:38.922][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.922][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:38.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:38.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.926][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:38.927][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:38.927][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.928][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.929][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:38.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:38.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.932][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:38.933][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:38.933][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.934][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:38.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:38.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.938][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:38.939][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:38.939][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.940][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.941][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:38.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:38.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.944][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:38.945][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:38.945][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.946][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.947][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:38.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:38.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.950][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:38.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:38.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.964][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:38.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:38.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.973][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:38.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:38.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.981][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:38.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:38.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.990][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:38.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:38.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:38.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:38.999][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:39.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:39.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.002][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:39.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:39.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:39.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:39.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:39.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:39.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:39.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:39.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:39.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:39.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:39.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:39.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:39.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:39.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:39.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:39.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:39.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:39.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:39.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:39.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:39.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:39.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:39.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:39.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:39.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:39.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:39.047][self$createEntryFromContent] Accession numbers: 167510855, 167430457, 167253771.
biodb.DEBUG[2023-04-15 08:08:39.048][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:39.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:39.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:39.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:39.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:39.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:39.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:39.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:39.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.060][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.062][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:39.063][private$selectFields]
biodb.TRACE[2023-04-15 08:08:39.064][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:39.064][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:39.065][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:39.066][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.067][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.067][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.068][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.069][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.069][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.070][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.071][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.071][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:39.072][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:39.073][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.073][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.074][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.075][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.075][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:39.076][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.079][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.085][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167510855].
biodb.DEBUG[2023-04-15 08:08:39.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:39.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:39.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:39.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:39.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:39.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:39.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:39.094][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.100][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:39.100][private$selectFields]
biodb.TRACE[2023-04-15 08:08:39.101][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:39.102][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:39.102][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:39.103][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.104][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.104][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.105][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.106][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.107][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.107][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.108][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.109][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:39.109][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:39.110][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.111][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.111][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.112][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.113][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:39.113][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.119][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.122][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167430457].
biodb.DEBUG[2023-04-15 08:08:39.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:39.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:39.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:39.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:39.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:39.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:39.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:39.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.136][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:39.137][private$selectFields]
biodb.TRACE[2023-04-15 08:08:39.138][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:39.138][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:39.139][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:39.140][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.140][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.141][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.142][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.142][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.143][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.144][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.145][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.145][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:39.146][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:39.147][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.147][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.148][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.149][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.149][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:39.150][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.153][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.159][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167253771].
biodb.DEBUG[2023-04-15 08:08:39.159][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:39.160][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:39.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:39.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:39.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:39.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:39.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:39.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:39.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:39.198][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715:226.19339285[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:39.201][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:08:39.201][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:08:39.203][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2023-04-15 08:08:39.279][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:08:39.280][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:08:39.283][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:08:39.285][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:08:39.378][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:08:39.381][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.content"
biodb.TRACE[2023-04-15 08:08:39.387][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.request"
biodb.DEBUG[2023-04-15 08:08:39.389][private$loadEntries] Creating entries from ids [3]: "167433165, 167363571, 167298842".
biodb.DEBUG[2023-04-15 08:08:39.390][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2023-04-15 08:08:39.391][cch$loadFileContent] Trying to load 3 files from cache: [3]: "167433165, 167363571, 167298842".
biodb.TRACE[2023-04-15 08:08:39.392][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2023-04-15 08:08:39.393][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:08:39.394][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:08:39.394][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:08:39.395][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:08:39.396][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-04-15 08:08:39.397][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2023-04-15 08:08:39.398][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167433165,167363571,167298842/XML".
biodb.DEBUG[2023-04-15 08:08:39.400][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:08:39.400][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:08:39.401][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167433165,167363571,167298842/XML".
biodb.TRACE[2023-04-15 08:08:39.571][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167433165,167363571,167298842/XML).
biodb.TRACE[2023-04-15 08:08:39.849][private$doSaveContentToFile] Saving to cache [3]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167433165.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167363571.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167298842.xml"
biodb.DEBUG[2023-04-15 08:08:39.851][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:08:39.852][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2023-04-15 08:08:39.852][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:08:39.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:39.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:39.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:39.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:39.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:39.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:39.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:39.863][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:39.864][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:39.864][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.865][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:39.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:39.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.869][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:39.870][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:39.870][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.871][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:39.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:39.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.875][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:39.876][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:39.876][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.877][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:39.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:39.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.881][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:39.882][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:39.882][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.883][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:39.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:39.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.887][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:39.887][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:39.888][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.889][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:39.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:39.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.893][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:39.893][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:39.894][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.895][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.896][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:39.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:39.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.899][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:39.900][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:39.900][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.901][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.902][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:39.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:39.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.905][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:39.906][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:39.906][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.907][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.908][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:39.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:39.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.911][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:39.912][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:39.912][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.913][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:39.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:39.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.917][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:39.918][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:39.918][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.919][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:39.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:39.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.923][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:39.923][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:39.924][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.925][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.926][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:39.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:39.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.929][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:39.929][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:39.930][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.931][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:39.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:39.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.934][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:39.935][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:39.936][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.936][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.937][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:39.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:39.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.940][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:39.941][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:39.942][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.942][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.943][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:39.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:39.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.946][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:39.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:39.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:39.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:39.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:39.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:39.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.955][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:39.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:39.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:39.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:39.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:39.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:39.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.963][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:39.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:39.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:39.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:39.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:39.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:39.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.972][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:39.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:39.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:39.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:39.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:39.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:39.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.980][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:39.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:39.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:39.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:39.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:39.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:39.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.988][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:39.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:39.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.991][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:39.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:39.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:39.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:39.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:39.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:40.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:40.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:40.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:40.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:40.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:40.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:40.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:40.021][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.022][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.027][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.032][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.037][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.038][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.038][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.039][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.043][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.044][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.044][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.045][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.049][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.049][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.050][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.051][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.055][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.055][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.056][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.057][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.061][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.061][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.062][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.063][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.066][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:40.067][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:40.068][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.069][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.069][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:40.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:40.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.072][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:40.073][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:40.074][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.074][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.075][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:40.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:40.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.078][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:40.079][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:40.080][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.080][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:40.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:40.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.084][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:40.085][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:40.085][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.086][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:40.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:40.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.090][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:40.091][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:40.091][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.092][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.093][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:40.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:40.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.096][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:40.097][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:40.098][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.099][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:40.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:40.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.103][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:40.103][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:40.104][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.105][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.106][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:40.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:40.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.109][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:40.109][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:40.110][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.111][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.112][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:40.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:40.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.115][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:40.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.123][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:40.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.132][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:40.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.134][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.140][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:40.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.149][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:40.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.157][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:40.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:40.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.160][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.163][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.168][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:40.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:40.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:40.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:40.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:40.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:40.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:40.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:40.190][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.190][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.191][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.192][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.196][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.197][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.197][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.198][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.202][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.203][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.204][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.204][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.208][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.209][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.210][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.210][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.214][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.215][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.216][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.216][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.220][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.221][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.222][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.222][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.226][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:40.227][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:40.228][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.228][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.229][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:40.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:40.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.232][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:40.233][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:40.233][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.234][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.235][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:40.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:40.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.238][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:40.239][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:40.239][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.240][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:40.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:40.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.244][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:40.245][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:40.245][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.246][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:40.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:40.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.250][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:40.251][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:40.251][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.252][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.253][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:40.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:40.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.262][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:40.263][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:40.263][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.264][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:40.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:40.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.268][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:40.269][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:40.269][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.270][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.271][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:40.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:40.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.274][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:40.275][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:40.275][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.276][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.277][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:40.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:40.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.280][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:40.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.289][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:40.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.297][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:40.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.306][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:40.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.312][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.315][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:40.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:40.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:40.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.335][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:40.372][self$createEntryFromContent] Accession numbers: 167433165, 167363571, 167298842.
biodb.DEBUG[2023-04-15 08:08:40.372][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:40.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:40.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:40.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:40.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:40.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:40.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:40.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:40.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.384][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.387][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:40.388][private$selectFields]
biodb.TRACE[2023-04-15 08:08:40.389][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:40.389][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:40.390][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:40.391][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.391][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.392][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.393][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.393][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.394][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.395][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.396][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.396][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:40.397][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:40.398][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.399][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.399][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.400][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.401][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:40.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.404][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.407][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.411][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167433165].
biodb.DEBUG[2023-04-15 08:08:40.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:40.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:40.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:40.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:40.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:40.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:40.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:40.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.425][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:40.426][private$selectFields]
biodb.TRACE[2023-04-15 08:08:40.426][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:40.427][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:40.428][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:40.429][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.429][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.430][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.431][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.431][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.432][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.433][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.433][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.434][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:40.435][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:40.435][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.436][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.437][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.437][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.438][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:40.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.448][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167363571].
biodb.DEBUG[2023-04-15 08:08:40.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:40.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:40.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:40.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:40.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:40.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:40.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:40.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.459][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.462][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:40.463][private$selectFields]
biodb.TRACE[2023-04-15 08:08:40.463][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:40.464][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:40.465][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:40.465][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.466][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.467][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.467][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.468][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.469][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.470][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.470][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.471][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:40.472][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:40.472][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.473][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.474][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.474][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.475][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:40.476][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.491][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167298842].
biodb.DEBUG[2023-04-15 08:08:40.491][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:40.492][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-04-15 08:08:40.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:40.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:40.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:40.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:40.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:40.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:40.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:40.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:40.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:40.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:40.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:40.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:40.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:40.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:40.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:40.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:40.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:40.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:40.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:40.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:40.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:40.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:40.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:40.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:40.554][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254:204.126644913746[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:40.556][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:40.557][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3123cd8cb57ce8b130489fc490c416f0".
biodb.TRACE[2023-04-15 08:08:40.558][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:40.559][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.content".
biodb.DEBUG[2023-04-15 08:08:40.560][private$loadEntries] Creating entries from ids [3]: "167522975, 167521614, 167521452".
biodb.DEBUG[2023-04-15 08:08:40.561][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2023-04-15 08:08:40.562][cch$loadFileContent] Trying to load 3 files from cache: [3]: "167522975, 167521614, 167521452".
biodb.TRACE[2023-04-15 08:08:40.563][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2023-04-15 08:08:40.565][loadFileContents] Loaded 3 files from cache: [3]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167522975.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167521614.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167521452.xml".
biodb.DEBUG[2023-04-15 08:08:40.566][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:08:40.567][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2023-04-15 08:08:40.568][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:08:40.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:40.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:40.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:40.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:40.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:40.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:40.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:40.578][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.579][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.579][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.580][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.584][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.585][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.585][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.586][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.590][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.591][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.591][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.592][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.596][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.597][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.597][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.598][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.602][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.603][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.604][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.604][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.608][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.609][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.610][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.611][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.614][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:40.615][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:40.616][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.616][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.617][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:40.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:40.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.620][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:40.621][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:40.622][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.622][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.623][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:40.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:40.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.626][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:40.627][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:40.628][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.628][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:40.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:40.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.632][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:40.633][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:40.634][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.634][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:40.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:40.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.638][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:40.639][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:40.639][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.640][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.641][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:40.642][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:40.642][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.643][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:40.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:40.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.647][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:40.648][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:40.648][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.649][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.650][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:40.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:40.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.653][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:40.654][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:40.654][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.655][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.656][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:40.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:40.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.659][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:40.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.667][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:40.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.676][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:40.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.684][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:40.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.692][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:40.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.701][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:40.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:40.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:40.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:40.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:40.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:40.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:40.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:40.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:40.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:40.740][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.740][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.741][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.742][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.746][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.746][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.747][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.748][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.752][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.752][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.753][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.754][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.757][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.758][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.759][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.760][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.763][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.764][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.765][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.766][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.769][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.770][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.771][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.772][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.775][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:40.776][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:40.777][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.778][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.778][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:40.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:40.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.781][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:40.782][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:40.783][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.783][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.784][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:40.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:40.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.787][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:40.788][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:40.789][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.789][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:40.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:40.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.793][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:40.794][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:40.795][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.795][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:40.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:40.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.799][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:40.800][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:40.801][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.801][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.802][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:40.803][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:40.804][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.805][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:40.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:40.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.809][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:40.809][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:40.810][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.811][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.812][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:40.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:40.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.815][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:40.815][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:40.816][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.817][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.818][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:40.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:40.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.821][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:40.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.829][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:40.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.838][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:40.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.846][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:40.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.854][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:40.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:40.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:40.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.866][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:40.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:40.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:40.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:40.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:40.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:40.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:40.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:40.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:40.894][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.895][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.896][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.897][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:40.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:40.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.901][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.901][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.902][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.903][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.907][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.908][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.908][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.909][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:40.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.913][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.914][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.914][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.915][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.919][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.920][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.920][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.921][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:40.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.925][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.926][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.926][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.927][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:40.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.937][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:40.938][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:40.939][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.939][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.940][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:40.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:40.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.943][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:40.944][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:40.945][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.945][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.946][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:40.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:40.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.949][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:40.950][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:40.951][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.951][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:40.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:40.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.955][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:40.956][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:40.957][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.957][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:40.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:40.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.961][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:40.962][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:40.963][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.963][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.964][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:40.965][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:40.966][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.966][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:40.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:40.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.970][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:40.971][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:40.971][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.972][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.973][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:40.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:40.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.976][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:40.977][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:40.977][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.978][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.979][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:40.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:40.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.982][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:40.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:40.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.990][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:40.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:40.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:40.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:40.999][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:41.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:41.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:41.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:41.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:41.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:41.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.008][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:41.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:41.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:41.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:41.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:41.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:41.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.017][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:41.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:41.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:41.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:41.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:41.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:41.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.025][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:41.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:41.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.028][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:41.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:41.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:41.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:41.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:41.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:41.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:41.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:41.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:41.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:41.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:41.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:41.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:41.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:41.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:41.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:41.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:41.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:41.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:41.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:41.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:41.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:41.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:41.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:41.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:41.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:41.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:41.073][self$createEntryFromContent] Accession numbers: 167522975, 167521614, 167521452.
biodb.DEBUG[2023-04-15 08:08:41.074][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:41.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:41.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:41.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:41.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:41.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:41.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:41.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:41.083][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.086][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.088][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:41.089][private$selectFields]
biodb.TRACE[2023-04-15 08:08:41.090][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:41.090][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:41.091][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:41.092][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.093][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.093][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.094][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.095][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.095][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.096][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.097][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.097][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:41.098][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:41.099][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.100][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.100][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.101][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.102][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:41.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.105][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.112][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167522975].
biodb.DEBUG[2023-04-15 08:08:41.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:41.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:41.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:41.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:41.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:41.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:41.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:41.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.126][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:41.127][private$selectFields]
biodb.TRACE[2023-04-15 08:08:41.128][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:41.128][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:41.129][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:41.130][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.130][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.131][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.132][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.132][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.133][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.134][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.134][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.135][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:41.136][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:41.137][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.137][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.138][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.139][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.139][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:41.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.149][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167521614].
biodb.DEBUG[2023-04-15 08:08:41.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:41.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:41.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:41.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:41.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:41.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:41.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:41.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.167][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.169][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:41.170][private$selectFields]
biodb.TRACE[2023-04-15 08:08:41.171][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:41.171][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:41.172][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:41.173][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.174][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.174][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.175][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.176][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.176][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.177][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.178][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.178][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:41.179][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:41.180][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.181][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.181][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.182][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.183][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:41.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.186][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.192][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167521452].
biodb.DEBUG[2023-04-15 08:08:41.193][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:41.194][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:41.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:41.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:41.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:41.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:41.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:41.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:41.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:41.226][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429:226.062362304571[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:41.229][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:08:41.230][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:08:41.231][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2023-04-15 08:08:41.304][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:08:41.306][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:08:41.307][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:08:41.309][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:08:41.400][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:08:41.403][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.content"
biodb.TRACE[2023-04-15 08:08:41.407][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.request"
biodb.DEBUG[2023-04-15 08:08:41.409][private$loadEntries] Creating entries from ids [2]: "167491296, 167491268".
biodb.DEBUG[2023-04-15 08:08:41.410][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2023-04-15 08:08:41.412][cch$loadFileContent] Trying to load 2 files from cache: [2]: "167491296, 167491268".
biodb.TRACE[2023-04-15 08:08:41.412][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2023-04-15 08:08:41.413][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:08:41.414][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:08:41.415][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:08:41.416][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:08:41.416][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-04-15 08:08:41.417][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2023-04-15 08:08:41.418][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167491296,167491268/XML".
biodb.DEBUG[2023-04-15 08:08:41.420][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:08:41.421][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:08:41.422][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167491296,167491268/XML".
biodb.TRACE[2023-04-15 08:08:41.537][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167491296,167491268/XML).
biodb.TRACE[2023-04-15 08:08:41.764][private$doSaveContentToFile] Saving to cache [2]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167491296.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167491268.xml"
biodb.DEBUG[2023-04-15 08:08:41.765][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:08:41.766][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2023-04-15 08:08:41.767][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:08:41.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:41.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:41.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:41.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:41.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:41.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:41.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:41.778][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:41.778][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:41.779][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.780][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:41.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:41.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.784][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:41.784][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:41.785][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.786][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:41.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:41.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.789][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:41.790][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:41.791][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.792][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:41.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:41.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.795][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:41.796][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:41.797][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.797][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:41.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:41.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.801][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:41.802][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:41.803][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.803][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:41.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:41.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.807][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:41.808][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:41.809][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.810][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:41.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:41.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.814][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:41.814][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:41.815][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.816][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.817][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:41.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:41.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.819][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:41.820][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:41.821][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.822][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.823][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:41.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:41.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.825][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:41.826][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:41.827][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.828][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:41.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:41.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.831][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:41.832][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:41.833][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.833][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:41.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:41.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.837][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:41.838][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:41.839][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.839][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.840][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:41.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:41.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.843][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:41.844][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:41.844][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.845][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:41.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:41.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.849][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:41.850][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:41.850][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.851][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.852][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:41.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:41.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.855][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:41.856][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:41.856][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.857][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.858][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:41.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:41.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.861][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:41.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:41.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:41.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:41.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:41.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:41.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.869][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:41.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:41.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:41.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:41.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:41.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:41.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.877][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:41.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:41.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:41.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:41.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:41.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:41.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.895][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:41.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:41.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:41.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:41.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:41.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:41.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.904][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:41.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:41.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.907][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:41.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:41.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:41.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:41.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.913][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:41.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:41.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.916][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:41.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:41.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.925][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:41.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:41.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:41.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:41.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:41.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:41.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:41.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:41.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:41.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:41.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:41.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:41.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:41.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:41.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:41.945][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:41.946][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:41.947][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.947][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:41.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:41.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.951][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:41.952][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:41.953][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.954][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:41.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:41.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.957][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:41.958][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:41.959][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.960][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:41.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:41.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.963][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:41.964][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:41.965][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.966][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:41.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:41.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.969][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:41.970][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:41.971][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.972][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:41.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:41.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.975][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:41.976][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:41.977][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.977][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:41.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:41.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.981][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:41.982][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:41.983][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.983][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.984][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:41.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:41.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.987][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:41.988][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:41.989][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.989][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.990][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:41.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:41.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.993][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:41.994][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:41.995][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.995][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:41.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:41.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:41.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:41.999][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:42.000][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:42.001][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.001][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:42.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:42.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.005][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:42.006][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:42.007][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.007][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.008][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:42.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:42.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.011][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:42.012][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:42.013][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.014][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:42.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:42.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.018][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:42.018][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:42.019][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.020][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.021][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:42.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:42.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.024][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:42.024][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:42.025][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.026][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.027][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:42.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:42.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.030][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:42.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:42.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:42.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:42.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:42.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:42.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.038][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:42.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:42.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:42.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:42.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.044][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:42.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:42.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.047][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:42.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:42.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:42.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:42.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:42.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:42.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.055][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:42.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:42.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:42.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:42.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:42.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:42.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.063][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:42.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:42.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:42.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:42.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:42.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:42.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.072][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:42.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:42.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.077][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:42.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:42.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.083][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:42.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:42.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:42.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:42.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:42.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:42.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:42.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:42.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:42.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:42.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:42.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:42.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:42.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:42.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:42.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:42.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:42.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:42.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:42.117][self$createEntryFromContent] Accession numbers: 167491296, 167491268.
biodb.DEBUG[2023-04-15 08:08:42.118][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:42.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:42.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:42.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:42.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:42.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:42.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:42.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:42.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.157][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.158][private$selectFields]
biodb.TRACE[2023-04-15 08:08:42.158][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:42.159][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:42.160][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.160][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.161][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.162][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.162][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.163][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.164][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.165][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.165][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.166][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.173][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.174][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.175][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.176][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.176][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.177][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:42.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.186][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167513889].
biodb.DEBUG[2023-04-15 08:08:42.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:42.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:42.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:42.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:42.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:42.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:42.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:42.195][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.198][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.201][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.202][private$selectFields]
biodb.TRACE[2023-04-15 08:08:42.202][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:42.203][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:42.204][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.204][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.205][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.206][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.207][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.207][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.208][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.209][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.209][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.210][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.211][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.212][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.212][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.213][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.214][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.215][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:42.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.221][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.224][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167491296].
biodb.DEBUG[2023-04-15 08:08:42.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:42.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:42.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:42.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:42.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:42.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:42.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:42.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.239][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.240][private$selectFields]
biodb.TRACE[2023-04-15 08:08:42.240][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:42.241][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:42.242][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.242][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.243][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.244][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.245][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.245][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.246][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.247][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.247][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.248][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.249][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.249][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.250][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.251][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.251][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.252][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:42.253][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.256][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.258][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.261][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167491268].
biodb.DEBUG[2023-04-15 08:08:42.262][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:42.263][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-04-15 08:08:42.268][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-04-15 08:08:42.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-04-15 08:08:42.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.271][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-04-15 08:08:42.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-04-15 08:08:42.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-15 08:08:42.275][biodb::testThat]
biodb.INFO [2023-04-15 08:08:42.276][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2023-04-15 08:08:42.276][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:42.277][biodb::testThat]
biodb.TRACE[2023-04-15 08:08:42.279][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-04-15 08:08:42.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-04-15 08:08:42.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.282][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-04-15 08:08:42.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-04-15 08:08:42.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:42.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:42.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:42.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:42.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:42.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:42.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:42.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:42.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:42.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:42.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:42.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:42.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:42.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:42.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:42.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:42.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:42.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:42.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:42.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:42.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:42.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:42.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:42.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:42.347][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:42.350][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:42.351][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2023-04-15 08:08:42.352][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:42.353][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2023-04-15 08:08:42.354][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:42.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:42.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:42.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:42.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:42.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:42.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:42.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:42.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.366][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.369][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.370][private$selectFields]
biodb.TRACE[2023-04-15 08:08:42.370][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:42.371][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:42.372][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.372][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.373][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.374][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.374][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.375][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.376][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.376][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.377][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.378][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.378][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.379][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.380][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.381][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.381][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.382][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:42.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.392][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529381].
biodb.DEBUG[2023-04-15 08:08:42.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:42.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:42.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:42.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:42.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:42.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:42.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:42.400][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.406][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.407][private$selectFields]
biodb.TRACE[2023-04-15 08:08:42.407][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:42.408][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:42.409][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.410][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.410][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.411][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.412][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.413][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.413][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.414][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.415][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.415][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.416][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.417][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.418][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.418][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.419][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.420][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:42.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.426][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.430][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167522372].
biodb.DEBUG[2023-04-15 08:08:42.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:42.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:42.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:42.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:42.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:42.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:42.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:42.438][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.445][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.445][private$selectFields]
biodb.TRACE[2023-04-15 08:08:42.446][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:42.447][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:42.447][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.448][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.449][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.449][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.450][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.451][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.452][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.452][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.453][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.454][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.454][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.455][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.456][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.456][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.457][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.458][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:42.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.461][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.464][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.467][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167522082].
biodb.DEBUG[2023-04-15 08:08:42.468][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:42.469][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:42.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:42.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:42.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:42.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:42.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:42.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:42.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:42.501][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:42.503][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:42.504][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2023-04-15 08:08:42.505][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:42.506][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2023-04-15 08:08:42.508][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:42.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:42.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:42.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:42.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:42.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:42.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:42.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:42.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.523][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.524][private$selectFields]
biodb.TRACE[2023-04-15 08:08:42.525][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:42.525][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:42.526][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.527][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.527][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.528][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.529][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.529][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.530][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.531][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.532][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.532][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.533][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.534][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.534][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.535][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.536][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.537][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:42.537][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.543][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.546][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167514507].
biodb.DEBUG[2023-04-15 08:08:42.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:42.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:42.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:42.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:42.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:42.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:42.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:42.561][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.566][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.567][private$selectFields]
biodb.TRACE[2023-04-15 08:08:42.568][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:42.568][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:42.569][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.570][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.571][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.571][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.572][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.573][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.573][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.574][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.575][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.575][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.576][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.577][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.578][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.578][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.579][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.580][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:42.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.583][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.586][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.589][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167491345].
biodb.DEBUG[2023-04-15 08:08:42.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:42.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:42.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:42.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:42.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:42.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:42.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:42.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.603][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.604][private$selectFields]
biodb.TRACE[2023-04-15 08:08:42.605][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:42.605][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:42.606][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.607][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.608][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.608][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.609][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.610][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.611][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.611][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.612][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.613][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.614][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.614][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.615][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.616][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.616][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.617][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:42.618][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.627][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167438444].
biodb.DEBUG[2023-04-15 08:08:42.628][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:42.628][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-04-15 08:08:42.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:42.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:42.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:42.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:42.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:42.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:42.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:42.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:42.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:42.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:42.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:42.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:42.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:42.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:42.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:42.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:42.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:42.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:42.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:42.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:42.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:42.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:42.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:42.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:42.698][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:42.700][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:42.701][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2023-04-15 08:08:42.702][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:42.703][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2023-04-15 08:08:42.704][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:42.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:42.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:42.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:42.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:42.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:42.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:42.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:42.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.719][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.720][private$selectFields]
biodb.TRACE[2023-04-15 08:08:42.721][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:42.721][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:42.722][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.723][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.724][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.724][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.725][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.726][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.727][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.727][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.728][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.729][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.729][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.730][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.731][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.731][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.732][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.733][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:42.734][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.736][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.742][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523845].
biodb.DEBUG[2023-04-15 08:08:42.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:42.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:42.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:42.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:42.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:42.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:42.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:42.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.754][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.757][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.758][private$selectFields]
biodb.TRACE[2023-04-15 08:08:42.758][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:42.759][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:42.760][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.760][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.761][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.762][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.762][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.763][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.764][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.765][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.770][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.771][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.772][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.773][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.774][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.775][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.776][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.777][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:42.777][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.780][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.783][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.786][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523844].
biodb.DEBUG[2023-04-15 08:08:42.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:42.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:42.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:42.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:42.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:42.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:42.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:42.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.801][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.801][private$selectFields]
biodb.TRACE[2023-04-15 08:08:42.802][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:42.803][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:42.803][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.804][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.805][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.806][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.806][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.807][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.808][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.808][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.809][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.810][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.811][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.811][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.812][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.813][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.813][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.814][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:42.815][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.818][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.821][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.824][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523841].
biodb.DEBUG[2023-04-15 08:08:42.825][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:42.825][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:42.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:42.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:42.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:42.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:42.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:42.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:42.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:42.857][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:42.860][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:42.861][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2023-04-15 08:08:42.862][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:42.863][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2023-04-15 08:08:42.864][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:42.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:42.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:42.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:42.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:42.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:42.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:42.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:42.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.877][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.880][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.880][private$selectFields]
biodb.TRACE[2023-04-15 08:08:42.881][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:42.882][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:42.882][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.883][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.884][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.885][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.885][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.886][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.887][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.887][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.888][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.889][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.890][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.890][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.891][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.892][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.892][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.893][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:42.894][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.899][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.902][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167527736].
biodb.DEBUG[2023-04-15 08:08:42.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:42.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:42.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:42.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:42.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:42.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:42.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:42.911][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.917][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.918][private$selectFields]
biodb.TRACE[2023-04-15 08:08:42.919][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:42.919][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:42.920][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.921][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.922][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.922][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.923][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.924][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.925][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.925][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.926][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.927][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.927][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.928][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.929][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.929][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.930][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.931][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:42.931][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.940][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167513889].
biodb.DEBUG[2023-04-15 08:08:42.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:42.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:42.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:42.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:42.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:42.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:42.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:42.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.954][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.955][private$selectFields]
biodb.TRACE[2023-04-15 08:08:42.956][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:42.956][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:42.957][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.958][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.959][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.959][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.960][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.961][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.961][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.962][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.963][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.963][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.964][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:42.965][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.965][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.966][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.967][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.967][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:42.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:42.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:42.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:42.977][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167510581].
biodb.DEBUG[2023-04-15 08:08:42.977][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:42.978][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-04-15 08:08:42.999][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-04-15 08:08:43.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-04-15 08:08:43.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.002][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-04-15 08:08:43.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-04-15 08:08:43.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.005][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:43.006][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:43.006][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.007][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.008][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:43.009][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:43.009][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.010][ef$get] fields variable is a list.
biodb.INFO [2023-04-15 08:08:43.011][biodb::testThat]
biodb.INFO [2023-04-15 08:08:43.012][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2023-04-15 08:08:43.013][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:43.013][biodb::testThat]
biodb.TRACE[2023-04-15 08:08:43.016][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-04-15 08:08:43.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-04-15 08:08:43.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.019][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-04-15 08:08:43.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-04-15 08:08:43.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:43.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:43.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:43.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:43.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:43.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:43.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:43.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:43.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:43.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:43.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:43.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:43.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:43.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:43.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:43.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:43.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:43.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:43.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:43.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:43.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:43.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:43.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:43.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:43.076][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:43.079][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:08:43.079][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:08:43.080][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2023-04-15 08:08:43.155][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:08:43.156][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:08:43.158][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:08:43.159][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:08:43.262][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:08:43.267][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content"
biodb.TRACE[2023-04-15 08:08:43.272][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.request"
biodb.DEBUG[2023-04-15 08:08:43.274][private$loadEntries] Creating entries from ids [3]: "83638281, 167531149, 167531046".
biodb.DEBUG[2023-04-15 08:08:43.274][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2023-04-15 08:08:43.276][cch$loadFileContent] Trying to load 3 files from cache: [3]: "83638281, 167531149, 167531046".
biodb.TRACE[2023-04-15 08:08:43.277][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2023-04-15 08:08:43.277][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:08:43.278][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:08:43.279][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:08:43.280][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:08:43.280][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-04-15 08:08:43.281][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2023-04-15 08:08:43.282][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/83638281,167531149,167531046/XML".
biodb.DEBUG[2023-04-15 08:08:43.284][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:08:43.285][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:08:43.285][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/83638281,167531149,167531046/XML".
biodb.TRACE[2023-04-15 08:08:43.422][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/83638281,167531149,167531046/XML).
biodb.TRACE[2023-04-15 08:08:43.677][private$doSaveContentToFile] Saving to cache [3]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/83638281.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167531149.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167531046.xml"
biodb.DEBUG[2023-04-15 08:08:43.679][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:08:43.680][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2023-04-15 08:08:43.681][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:08:43.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:43.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:43.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:43.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:43.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:43.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:43.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:43.691][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:43.692][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:43.693][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.693][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:43.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:43.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.697][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:43.698][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:43.699][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.699][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:43.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:43.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.703][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:43.704][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:43.705][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.705][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:43.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:43.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.709][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:43.710][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:43.710][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.711][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:43.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:43.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.715][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:43.716][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:43.716][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.717][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:43.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:43.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.721][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:43.722][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:43.723][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.723][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:43.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:43.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.727][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:43.728][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:43.728][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.729][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.730][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:43.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:43.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.733][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:43.734][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:43.734][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.735][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.736][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:43.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:43.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.739][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:43.740][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:43.740][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.741][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:43.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:43.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.745][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:43.745][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:43.746][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.747][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:43.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:43.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.751][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:43.751][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:43.752][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.753][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.753][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:43.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:43.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.756][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:43.757][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:43.758][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.758][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:43.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:43.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.762][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:43.763][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:43.764][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.764][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.765][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:43.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:43.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.768][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:43.769][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:43.769][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.770][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.771][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:43.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:43.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.774][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:43.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:43.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:43.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:43.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:43.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:43.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.798][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:43.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:43.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:43.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:43.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:43.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:43.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.808][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:43.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:43.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:43.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:43.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:43.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:43.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.816][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:43.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:43.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:43.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:43.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:43.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:43.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.825][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:43.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:43.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:43.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:43.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:43.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:43.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.834][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:43.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:43.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:43.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:43.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:43.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:43.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:43.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:43.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:43.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:43.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:43.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:43.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:43.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:43.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:43.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:43.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:43.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:43.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:43.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:43.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:43.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:43.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:43.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:43.867][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:43.868][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:43.869][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.869][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:43.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:43.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.873][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:43.874][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:43.875][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.875][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:43.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:43.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.880][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:43.880][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:43.881][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.882][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:43.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:43.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.886][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:43.886][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:43.887][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.888][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:43.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:43.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.892][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:43.892][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:43.893][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.894][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:43.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:43.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.898][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:43.898][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:43.899][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.900][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:43.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:43.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.904][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:43.904][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:43.905][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.906][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.907][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:43.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:43.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.910][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:43.910][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:43.911][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.912][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.913][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:43.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:43.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.916][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:43.917][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:43.917][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.918][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:43.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:43.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.922][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:43.923][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:43.924][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.924][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:43.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:43.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.928][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:43.929][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:43.929][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.930][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.931][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:43.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:43.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.934][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:43.935][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:43.936][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.936][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:43.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:43.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.940][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:43.941][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:43.942][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.942][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.943][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:43.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:43.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.946][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:43.947][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:43.948][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.948][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:43.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:43.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.952][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:43.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:43.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:43.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:43.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:43.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:43.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.961][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:43.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:43.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:43.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:43.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:43.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:43.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.969][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:43.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:43.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:43.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:43.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:43.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:43.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.978][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:43.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:43.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:43.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:43.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:43.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:43.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.986][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:43.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:43.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:43.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:43.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:43.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:43.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.994][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:43.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:43.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:43.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:43.997][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:43.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:43.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:44.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:44.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.006][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:44.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:44.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:44.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:44.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:44.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:44.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:44.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:44.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:44.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:44.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:44.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:44.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:44.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:44.034][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:44.035][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:44.036][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.036][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:44.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:44.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.040][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:44.041][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:44.042][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.042][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.044][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:44.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:44.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.046][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:44.047][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:44.048][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.049][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.050][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:44.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:44.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.053][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:44.053][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:44.054][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.055][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:44.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:44.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.058][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:44.059][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:44.060][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.061][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:44.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:44.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.065][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:44.065][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:44.066][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.067][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.068][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:44.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:44.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.071][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:44.071][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:44.072][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.073][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.074][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:44.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:44.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.076][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:44.077][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:44.078][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.078][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.079][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:44.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:44.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.082][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:44.083][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:44.084][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.085][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:44.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:44.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.088][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:44.089][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:44.090][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.091][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:44.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:44.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.094][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:44.095][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:44.096][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.097][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.098][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:44.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:44.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.100][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:44.101][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:44.102][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.103][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:44.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:44.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.106][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:44.107][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:44.108][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.109][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.110][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:44.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:44.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.112][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:44.113][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:44.114][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.114][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:44.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:44.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.119][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:44.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:44.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.122][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:44.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:44.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:44.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:44.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.127][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:44.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:44.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:44.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:44.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:44.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:44.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.136][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:44.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:44.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:44.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:44.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:44.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:44.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.145][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:44.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:44.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:44.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:44.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:44.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:44.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.154][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:44.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:44.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:44.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:44.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:44.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:44.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.162][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:44.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:44.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.165][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.168][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:44.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:44.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:44.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:44.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:44.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:44.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:44.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:44.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:44.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:44.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:44.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:44.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:44.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:44.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:44.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:44.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:44.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:44.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:44.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:44.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:44.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:44.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:44.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:44.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:44.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:44.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:44.209][self$createEntryFromContent] Accession numbers: 83638281, 167531149, 167531046.
biodb.DEBUG[2023-04-15 08:08:44.210][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:44.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:44.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:44.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:44.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:44.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:44.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:44.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:44.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.222][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.225][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:44.226][private$selectFields]
biodb.TRACE[2023-04-15 08:08:44.227][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:44.227][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:44.228][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:44.229][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.229][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.230][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.231][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.232][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.232][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.233][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.234][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.234][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:44.235][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:44.236][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.237][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.237][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.238][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.239][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:44.240][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.242][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.251][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.255][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [83638281].
biodb.DEBUG[2023-04-15 08:08:44.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:44.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:44.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:44.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:44.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:44.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:44.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:44.264][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.267][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.270][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:44.271][private$selectFields]
biodb.TRACE[2023-04-15 08:08:44.271][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:44.272][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:44.273][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:44.273][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.274][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.275][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.276][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.276][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.277][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.278][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.278][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.279][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:44.280][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:44.281][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.281][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.282][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.283][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.283][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:44.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.287][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.290][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.293][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167531149].
biodb.DEBUG[2023-04-15 08:08:44.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:44.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:44.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:44.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:44.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:44.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:44.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:44.301][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.304][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.307][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:44.308][private$selectFields]
biodb.TRACE[2023-04-15 08:08:44.309][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:44.309][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:44.310][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:44.311][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.312][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.312][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.313][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.314][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.314][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.315][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.316][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.316][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:44.317][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:44.318][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.319][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.319][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.320][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.321][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:44.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.325][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.328][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:44.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:44.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:44.331][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167531046].
biodb.DEBUG[2023-04-15 08:08:44.331][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:44.332][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:44.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:44.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:44.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:44.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:44.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:44.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:44.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:44.365][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:44.367][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:08:44.368][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:08:44.369][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2023-04-15 08:08:44.446][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:08:44.448][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:08:44.451][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:08:44.454][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:08:44.551][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:08:44.555][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content"
biodb.TRACE[2023-04-15 08:08:44.562][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.request"
biodb.DEBUG[2023-04-15 08:08:44.564][private$loadEntries] Creating entries from ids [2]: "167523198, 167522153".
biodb.DEBUG[2023-04-15 08:08:44.565][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2023-04-15 08:08:44.566][cch$loadFileContent] Trying to load 2 files from cache: [2]: "167523198, 167522153".
biodb.TRACE[2023-04-15 08:08:44.567][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2023-04-15 08:08:44.568][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:08:44.569][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:08:44.569][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:08:44.570][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:08:44.571][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-04-15 08:08:44.572][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2023-04-15 08:08:44.573][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167523198,167522153/XML".
biodb.DEBUG[2023-04-15 08:08:44.574][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:08:44.575][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:08:44.576][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167523198,167522153/XML".
biodb.TRACE[2023-04-15 08:08:44.834][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167523198,167522153/XML).
biodb.TRACE[2023-04-15 08:08:45.169][private$doSaveContentToFile] Saving to cache [2]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167523198.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167522153.xml"
biodb.DEBUG[2023-04-15 08:08:45.170][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:08:45.171][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2023-04-15 08:08:45.172][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:08:45.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:45.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:45.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:45.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:45.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:45.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:45.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:45.183][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:45.184][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:45.185][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.186][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:45.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:45.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.190][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:45.191][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:45.191][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.192][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:45.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:45.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.196][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:45.197][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:45.198][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.198][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:45.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:45.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.202][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:45.203][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:45.204][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.205][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:45.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:45.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.209][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:45.210][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:45.210][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.211][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:45.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:45.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.215][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:45.216][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:45.217][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.217][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:45.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:45.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.222][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:45.222][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:45.223][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.224][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.225][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:45.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:45.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.228][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:45.229][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:45.229][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.230][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.231][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:45.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:45.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.234][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:45.235][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:45.236][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.237][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:45.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:45.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.241][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:45.241][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:45.242][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.243][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:45.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:45.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.247][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:45.248][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:45.249][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.254][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.260][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:45.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:45.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.264][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:45.265][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:45.266][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.266][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:45.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:45.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.270][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:45.271][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:45.272][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.273][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.274][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:45.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:45.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.277][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:45.277][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:45.278][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.279][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.280][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:45.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:45.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.283][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:45.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:45.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:45.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:45.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:45.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:45.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.292][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:45.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:45.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:45.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:45.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:45.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:45.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.301][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:45.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:45.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:45.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:45.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:45.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:45.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.310][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:45.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:45.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:45.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:45.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:45.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:45.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.318][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:45.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:45.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:45.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:45.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:45.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:45.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.328][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:45.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:45.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.331][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:45.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:45.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:45.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:45.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:45.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:45.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:45.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:45.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:45.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:45.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:45.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:45.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:45.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:45.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:45.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:45.361][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:45.362][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:45.363][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.364][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:45.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:45.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.368][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:45.368][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:45.369][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.370][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:45.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:45.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.374][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:45.375][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:45.375][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.376][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:45.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:45.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.380][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:45.381][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:45.381][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.382][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:45.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:45.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.386][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:45.387][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:45.388][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.388][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:45.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:45.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.392][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:45.393][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:45.394][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.394][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:45.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:45.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.398][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:45.399][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:45.400][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.401][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.402][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:45.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:45.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.405][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:45.405][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:45.406][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.407][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.408][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:45.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:45.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.411][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:45.412][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:45.412][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.413][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:45.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:45.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.417][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:45.418][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:45.419][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.419][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:45.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:45.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.423][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:45.424][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:45.425][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.426][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.427][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:45.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:45.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.430][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:45.430][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:45.431][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.432][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:45.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:45.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.436][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:45.437][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:45.438][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.438][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.439][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:45.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:45.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.442][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:45.443][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:45.444][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.445][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.446][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:45.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:45.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.449][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:45.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:45.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:45.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:45.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:45.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:45.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.458][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:45.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:45.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:45.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:45.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:45.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:45.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.467][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:45.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:45.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:45.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:45.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:45.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:45.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.477][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:45.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:45.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:45.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:45.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:45.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:45.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.486][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:45.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:45.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:45.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:45.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:45.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:45.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:45.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:45.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:45.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:45.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.514][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:45.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:45.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:45.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:45.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:45.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:45.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:45.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:45.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:45.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:45.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:45.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:45.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:45.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:45.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:45.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:45.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:45.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:45.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:45.549][self$createEntryFromContent] Accession numbers: 167523198, 167522153.
biodb.DEBUG[2023-04-15 08:08:45.550][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:45.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:45.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:45.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:45.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:45.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:45.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:45.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:45.560][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.566][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.567][private$selectFields]
biodb.TRACE[2023-04-15 08:08:45.568][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:45.569][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:45.569][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.570][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.571][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.572][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.572][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.573][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.574][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.574][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.575][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.576][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.577][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.578][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.578][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.579][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.580][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.580][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:45.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.584][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.591][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523198].
biodb.DEBUG[2023-04-15 08:08:45.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:45.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:45.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:45.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:45.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:45.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:45.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:45.600][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.604][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.607][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.607][private$selectFields]
biodb.TRACE[2023-04-15 08:08:45.608][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:45.609][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:45.610][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.610][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.611][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.612][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.613][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.614][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.614][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.615][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.616][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.617][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.618][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.618][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.619][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.620][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.621][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.621][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:45.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.632][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167522153].
biodb.DEBUG[2023-04-15 08:08:45.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:45.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:45.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:45.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:45.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:45.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:45.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:45.641][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.648][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.648][private$selectFields]
biodb.TRACE[2023-04-15 08:08:45.649][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:45.650][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:45.651][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.651][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.652][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.653][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.654][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.654][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.655][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.656][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.657][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.658][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.658][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.659][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.660][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.661][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.661][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.662][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:45.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.669][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.672][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167514507].
biodb.DEBUG[2023-04-15 08:08:45.673][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:45.674][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:45.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:45.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:45.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:45.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:45.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:45.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:45.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:45.721][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:45.724][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:45.725][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2023-04-15 08:08:45.725][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:45.726][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2023-04-15 08:08:45.728][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:45.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:45.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:45.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:45.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:45.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:45.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:45.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:45.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.750][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.751][private$selectFields]
biodb.TRACE[2023-04-15 08:08:45.751][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:45.752][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:45.753][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.753][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.754][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.755][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.756][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.756][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.757][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.758][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.758][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.759][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.760][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.761][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.761][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.762][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.763][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.763][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:45.764][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.767][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.773][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529381].
biodb.DEBUG[2023-04-15 08:08:45.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:45.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:45.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:45.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:45.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:45.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:45.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:45.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.787][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.788][private$selectFields]
biodb.TRACE[2023-04-15 08:08:45.788][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:45.789][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:45.790][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.791][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.791][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.792][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.793][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.794][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.794][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.795][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.796][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.796][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.797][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.798][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.799][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.799][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.800][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.801][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:45.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.804][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.810][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167522372].
biodb.DEBUG[2023-04-15 08:08:45.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:45.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:45.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:45.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:45.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:45.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:45.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:45.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.826][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.826][private$selectFields]
biodb.TRACE[2023-04-15 08:08:45.827][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:45.828][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:45.829][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.829][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.830][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.831][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.832][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.832][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.833][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.834][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.835][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.835][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.836][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.837][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.838][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.838][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.839][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.840][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:45.841][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.850][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167522082].
biodb.DEBUG[2023-04-15 08:08:45.850][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:45.851][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:45.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:45.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:45.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:45.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:45.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:45.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:45.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:45.886][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:45.889][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:45.890][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2023-04-15 08:08:45.891][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:45.892][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2023-04-15 08:08:45.893][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:45.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:45.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:45.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:45.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:45.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:45.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:45.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:45.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.906][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.909][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.910][private$selectFields]
biodb.TRACE[2023-04-15 08:08:45.911][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:45.912][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:45.912][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.913][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.914][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.914][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.915][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.916][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.917][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.918][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.918][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.919][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.920][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.921][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.921][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.922][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.923][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.924][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:45.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.930][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.934][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167514507].
biodb.DEBUG[2023-04-15 08:08:45.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:45.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:45.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:45.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:45.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:45.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:45.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:45.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.946][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.950][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.950][private$selectFields]
biodb.TRACE[2023-04-15 08:08:45.951][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:45.952][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:45.953][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.953][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.954][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.955][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.956][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.956][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.957][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.958][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.959][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.959][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.960][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.961][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.962][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.968][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.969][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.970][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:45.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.981][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167491345].
biodb.DEBUG[2023-04-15 08:08:45.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:45.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:45.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:45.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:45.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:45.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:45.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:45.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:45.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:45.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:45.996][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.997][private$selectFields]
biodb.TRACE[2023-04-15 08:08:45.997][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:45.998][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:45.999][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:45.999][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.000][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.001][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.002][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.002][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.003][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.004][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.005][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.005][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:46.006][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:46.007][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.008][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.008][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.009][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.010][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:46.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.013][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.016][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.019][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167438444].
biodb.DEBUG[2023-04-15 08:08:46.020][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:46.021][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:46.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:46.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:46.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:46.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:46.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:46.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:46.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:46.069][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:46.071][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:08:46.072][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:08:46.073][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2023-04-15 08:08:46.202][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:08:46.204][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:08:46.206][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:08:46.208][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:08:46.342][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:08:46.347][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content"
biodb.TRACE[2023-04-15 08:08:46.353][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.request"
biodb.DEBUG[2023-04-15 08:08:46.354][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:46.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:46.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:46.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:46.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:46.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:46.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:46.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:46.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.371][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:46.372][private$selectFields]
biodb.TRACE[2023-04-15 08:08:46.373][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:46.373][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:46.374][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:46.375][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.376][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.377][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.377][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.378][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.379][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.380][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.380][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.381][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:46.382][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:46.382][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.383][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.384][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.385][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.386][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:46.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.396][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529381].
biodb.DEBUG[2023-04-15 08:08:46.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:46.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:46.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:46.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:46.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:46.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:46.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:46.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.411][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:46.412][private$selectFields]
biodb.TRACE[2023-04-15 08:08:46.412][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:46.413][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:46.414][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:46.414][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.415][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.416][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.417][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.417][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.418][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.419][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.420][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.421][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:46.421][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:46.422][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.423][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.423][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.424][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.425][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:46.426][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.435][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523845].
biodb.DEBUG[2023-04-15 08:08:46.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:46.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:46.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:46.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:46.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:46.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:46.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:46.444][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.450][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:46.450][private$selectFields]
biodb.TRACE[2023-04-15 08:08:46.451][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:46.452][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:46.453][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:46.453][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.454][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.455][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.455][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.456][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.457][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.458][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.458][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.459][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:46.460][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:46.461][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.461][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.462][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.463][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.463][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:46.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.475][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:46.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:46.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:46.481][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523844].
biodb.DEBUG[2023-04-15 08:08:46.482][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:46.483][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:46.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:46.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:46.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:46.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:46.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:46.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:46.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:46.515][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:46.517][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:08:46.518][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:08:46.519][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2023-04-15 08:08:46.594][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:08:46.595][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:08:46.597][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:08:46.598][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:08:46.699][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:08:46.702][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content"
biodb.TRACE[2023-04-15 08:08:46.709][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.request"
biodb.DEBUG[2023-04-15 08:08:46.712][private$loadEntries] Creating entries from ids [3]: "167529602, 167529523, 167529363".
biodb.DEBUG[2023-04-15 08:08:46.713][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2023-04-15 08:08:46.714][cch$loadFileContent] Trying to load 3 files from cache: [3]: "167529602, 167529523, 167529363".
biodb.TRACE[2023-04-15 08:08:46.715][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2023-04-15 08:08:46.716][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:08:46.717][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:08:46.718][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:08:46.719][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:08:46.720][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-04-15 08:08:46.720][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2023-04-15 08:08:46.722][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167529602,167529523,167529363/XML".
biodb.DEBUG[2023-04-15 08:08:46.724][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:08:46.725][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:08:46.726][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167529602,167529523,167529363/XML".
biodb.TRACE[2023-04-15 08:08:46.877][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167529602,167529523,167529363/XML).
biodb.TRACE[2023-04-15 08:08:47.179][private$doSaveContentToFile] Saving to cache [3]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167529602.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167529523.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167529363.xml"
biodb.DEBUG[2023-04-15 08:08:47.180][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:08:47.181][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2023-04-15 08:08:47.182][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:08:47.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:47.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:47.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:47.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:47.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:47.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:47.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:47.194][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:47.195][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:47.195][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.196][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:47.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:47.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.200][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:47.201][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:47.202][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.203][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:47.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:47.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.207][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:47.208][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:47.209][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.209][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:47.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:47.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.213][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:47.214][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:47.215][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.216][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:47.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:47.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.220][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:47.221][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:47.221][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.222][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:47.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:47.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.226][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:47.227][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:47.228][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.229][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:47.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:47.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.233][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:47.234][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:47.235][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.235][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.236][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:47.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:47.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.240][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:47.240][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:47.241][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.242][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.243][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:47.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:47.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.246][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:47.247][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:47.247][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.248][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:47.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:47.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.252][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:47.253][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:47.254][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.254][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:47.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:47.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.258][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:47.259][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:47.260][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.261][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.262][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:47.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:47.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.265][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:47.265][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:47.266][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.267][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:47.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:47.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.271][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:47.272][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:47.272][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.273][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.274][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:47.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:47.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.277][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:47.278][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:47.279][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.279][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.280][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:47.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:47.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.283][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:47.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:47.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:47.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:47.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:47.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:47.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.292][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:47.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:47.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:47.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:47.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:47.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:47.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.301][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:47.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:47.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:47.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:47.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:47.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:47.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.310][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:47.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:47.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:47.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:47.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.316][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:47.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:47.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.318][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:47.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:47.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:47.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:47.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:47.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:47.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:47.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:47.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.330][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:47.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:47.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:47.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:47.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:47.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:47.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:47.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:47.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:47.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:47.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:47.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:47.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:47.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:47.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:47.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:47.372][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:47.373][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:47.373][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.374][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:47.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:47.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.378][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:47.379][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:47.380][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.380][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:47.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:47.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.384][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:47.385][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:47.386][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.387][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:47.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:47.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.391][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:47.391][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:47.392][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.393][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:47.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:47.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.397][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:47.398][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:47.398][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.399][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:47.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:47.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.403][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:47.404][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:47.405][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.405][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:47.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:47.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.409][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:47.410][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:47.411][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.412][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.413][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:47.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:47.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.416][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:47.416][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:47.417][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.418][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.419][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:47.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:47.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.422][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:47.423][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:47.423][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.424][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:47.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:47.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.428][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:47.429][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:47.429][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.430][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:47.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:47.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.434][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:47.435][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:47.436][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.436][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.437][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:47.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:47.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.440][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:47.441][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:47.442][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.442][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:47.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:47.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.447][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:47.447][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:47.448][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.449][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.450][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:47.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:47.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.453][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:47.454][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:47.454][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.455][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:47.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:47.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.459][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:47.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:47.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:47.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:47.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:47.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:47.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.468][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:47.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:47.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:47.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:47.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:47.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:47.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.477][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:47.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:47.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:47.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:47.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:47.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:47.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.485][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:47.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:47.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:47.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:47.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:47.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:47.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.494][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:47.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:47.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:47.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:47.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:47.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:47.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:47.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:47.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:47.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:47.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.514][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:47.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:47.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:47.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:47.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:47.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:47.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:47.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:47.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:47.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:47.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:47.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:47.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:47.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:47.535][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:47.535][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:47.536][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.537][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:47.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:47.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.541][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:47.541][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:47.542][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.543][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:47.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:47.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.547][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:47.547][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:47.548][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.549][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.550][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:47.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:47.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.552][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:47.553][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:47.554][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.555][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:47.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:47.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.558][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:47.559][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:47.560][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.561][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:47.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:47.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.564][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:47.565][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:47.566][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.572][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.573][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:47.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:47.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.577][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:47.578][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:47.579][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.580][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.580][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:47.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:47.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.583][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:47.584][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:47.585][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.585][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.586][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:47.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:47.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.589][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:47.590][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:47.591][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.591][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:47.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:47.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.595][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:47.596][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:47.597][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.597][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:47.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:47.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.601][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:47.602][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:47.602][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.603][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.604][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:47.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:47.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.607][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:47.608][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:47.608][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.609][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:47.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:47.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.613][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:47.613][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:47.614][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.615][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.616][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:47.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:47.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.619][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:47.619][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:47.620][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.621][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.622][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:47.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:47.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.624][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:47.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:47.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:47.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:47.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:47.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:47.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.633][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:47.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:47.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:47.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:47.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:47.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:47.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.642][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:47.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:47.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:47.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:47.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:47.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:47.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.650][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:47.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:47.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:47.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:47.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:47.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:47.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.659][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:47.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:47.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:47.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:47.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:47.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:47.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.668][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:47.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:47.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.670][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:47.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:47.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.679][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:47.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:47.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:47.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:47.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:47.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:47.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:47.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:47.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:47.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:47.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:47.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:47.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:47.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:47.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:47.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:47.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:47.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:47.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:47.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:47.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:47.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:47.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:47.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:47.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:47.716][self$createEntryFromContent] Accession numbers: 167529602, 167529523, 167529363.
biodb.DEBUG[2023-04-15 08:08:47.717][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:47.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:47.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:47.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:47.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:47.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:47.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:47.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:47.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.729][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.731][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:47.732][private$selectFields]
biodb.TRACE[2023-04-15 08:08:47.733][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:47.733][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:47.734][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:47.735][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.735][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.736][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.737][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.738][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.738][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.739][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.740][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.740][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:47.741][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:47.742][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.742][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.743][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.744][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.745][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:47.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.754][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529602].
biodb.DEBUG[2023-04-15 08:08:47.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:47.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:47.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:47.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:47.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:47.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:47.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:47.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.768][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:47.769][private$selectFields]
biodb.TRACE[2023-04-15 08:08:47.769][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:47.770][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:47.771][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:47.771][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.772][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.773][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.774][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.774][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.775][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.776][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.776][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.777][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:47.778][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:47.778][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.779][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.780][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.781][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.781][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:47.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.793][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.797][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529523].
biodb.DEBUG[2023-04-15 08:08:47.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:47.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:47.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:47.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:47.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:47.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:47.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:47.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.808][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.811][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:47.812][private$selectFields]
biodb.TRACE[2023-04-15 08:08:47.813][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:47.813][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:47.814][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:47.815][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.815][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.816][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.817][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.817][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.818][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.819][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.820][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.820][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:47.821][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:47.822][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.822][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.823][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.824][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.824][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:47.825][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.828][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.831][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.834][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529363].
biodb.DEBUG[2023-04-15 08:08:47.835][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:47.835][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:47.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:47.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:47.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:47.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:47.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:47.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:47.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:47.879][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:47.881][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:47.882][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9701d2e1a6b096cdfd56943877648611".
biodb.TRACE[2023-04-15 08:08:47.883][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:47.884][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content".
biodb.DEBUG[2023-04-15 08:08:47.885][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:47.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:47.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:47.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:47.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:47.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:47.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:47.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:47.894][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.900][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:47.900][private$selectFields]
biodb.TRACE[2023-04-15 08:08:47.901][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:47.902][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:47.902][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:47.903][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.904][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.905][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.905][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.906][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.907][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.907][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.908][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.909][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:47.909][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:47.910][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.911][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.912][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.912][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.913][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:47.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.916][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.922][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [83638281].
biodb.DEBUG[2023-04-15 08:08:47.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:47.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:47.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:47.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:47.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:47.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:47.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:47.930][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.936][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:47.937][private$selectFields]
biodb.TRACE[2023-04-15 08:08:47.937][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:47.938][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:47.939][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:47.940][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.940][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.941][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.942][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.942][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.943][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.944][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.944][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.945][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:47.946][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:47.946][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.947][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.948][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.949][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.949][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:47.950][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.959][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167531149].
biodb.DEBUG[2023-04-15 08:08:47.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:47.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:47.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:47.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:47.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:47.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:47.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:47.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.973][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:47.973][private$selectFields]
biodb.TRACE[2023-04-15 08:08:47.974][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:47.974][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:47.975][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:47.976][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.977][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.977][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.978][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.979][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.979][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.980][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.981][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.981][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:47.982][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:47.983][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.984][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.984][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.985][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.986][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:47.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:47.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:47.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:47.995][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167531046].
biodb.DEBUG[2023-04-15 08:08:47.996][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:47.996][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:47.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:47.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:47.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:48.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:48.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:48.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:48.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:48.033][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:48.035][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:48.036][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ce15c6e17e9ed97ba06e918ccdf7a5ba".
biodb.TRACE[2023-04-15 08:08:48.037][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:48.038][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content".
biodb.DEBUG[2023-04-15 08:08:48.039][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:48.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:48.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:48.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:48.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:48.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:48.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:48.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:48.047][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.053][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.054][private$selectFields]
biodb.TRACE[2023-04-15 08:08:48.054][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:48.055][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:48.056][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.056][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.057][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.058][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.058][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.059][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.060][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.061][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.061][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.062][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.063][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.063][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.064][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.065][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.066][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.066][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:48.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.076][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523198].
biodb.DEBUG[2023-04-15 08:08:48.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:48.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:48.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:48.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:48.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:48.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:48.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:48.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.086][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.089][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.090][private$selectFields]
biodb.TRACE[2023-04-15 08:08:48.091][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:48.091][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:48.092][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.093][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.093][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.094][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.095][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.095][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.096][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.097][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.098][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.098][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.099][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.100][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.100][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.101][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.102][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.102][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:48.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.112][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167522153].
biodb.DEBUG[2023-04-15 08:08:48.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:48.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:48.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:48.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:48.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:48.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:48.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:48.120][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.125][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.126][private$selectFields]
biodb.TRACE[2023-04-15 08:08:48.127][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:48.127][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:48.128][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.129][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.130][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.130][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.131][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.132][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.132][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.133][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.134][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.134][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.135][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.136][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.137][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.137][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.138][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.138][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:48.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.142][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.145][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.148][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167514507].
biodb.DEBUG[2023-04-15 08:08:48.148][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:48.149][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:48.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:48.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:48.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:48.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:48.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:48.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:48.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:48.190][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:48.192][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:48.193][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2023-04-15 08:08:48.194][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:48.195][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2023-04-15 08:08:48.196][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:48.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:48.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:48.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:48.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:48.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:48.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:48.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:48.205][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.212][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.216][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.216][private$selectFields]
biodb.TRACE[2023-04-15 08:08:48.217][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:48.218][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:48.219][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.219][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.220][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.221][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.221][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.222][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.223][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.223][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.224][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.225][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.225][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.226][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.227][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.227][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.228][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.229][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:48.230][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.238][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529381].
biodb.DEBUG[2023-04-15 08:08:48.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:48.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:48.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:48.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:48.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:48.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:48.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:48.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.252][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.253][private$selectFields]
biodb.TRACE[2023-04-15 08:08:48.253][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:48.254][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:48.254][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.255][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.256][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.257][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.257][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.258][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.259][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.259][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.260][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.261][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.261][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.262][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.263][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.263][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.264][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.265][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:48.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.274][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167522372].
biodb.DEBUG[2023-04-15 08:08:48.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:48.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:48.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:48.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:48.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:48.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:48.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:48.282][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.285][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.288][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.289][private$selectFields]
biodb.TRACE[2023-04-15 08:08:48.289][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:48.290][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:48.290][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.291][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.292][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.293][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.293][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.294][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.295][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.295][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.296][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.297][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.297][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.298][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.299][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.300][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.300][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.301][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:48.302][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.304][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.310][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167522082].
biodb.DEBUG[2023-04-15 08:08:48.311][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:48.312][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:48.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:48.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:48.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:48.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:48.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:48.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:48.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:48.340][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:48.342][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:48.343][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2023-04-15 08:08:48.344][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:48.345][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2023-04-15 08:08:48.346][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:48.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:48.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:48.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:48.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:48.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:48.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:48.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:48.355][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.360][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.361][private$selectFields]
biodb.TRACE[2023-04-15 08:08:48.361][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:48.362][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:48.363][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.363][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.364][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.365][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.366][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.366][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.367][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.368][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.368][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.369][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.370][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.370][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.371][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.372][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.372][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.373][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:48.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.379][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.382][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167514507].
biodb.DEBUG[2023-04-15 08:08:48.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:48.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:48.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:48.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:48.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:48.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:48.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:48.390][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.393][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.396][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.396][private$selectFields]
biodb.TRACE[2023-04-15 08:08:48.397][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:48.398][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:48.398][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.399][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.400][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.400][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.401][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.402][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.403][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.403][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.404][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.405][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.405][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.406][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.407][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.407][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.408][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.409][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:48.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.423][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167491345].
biodb.DEBUG[2023-04-15 08:08:48.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:48.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:48.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:48.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:48.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:48.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:48.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:48.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.437][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.438][private$selectFields]
biodb.TRACE[2023-04-15 08:08:48.438][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:48.439][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:48.440][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.440][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.441][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.442][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.442][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.443][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.444][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.444][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.445][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.446][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.446][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.447][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.448][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.449][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.449][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.450][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:48.451][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.459][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167438444].
biodb.DEBUG[2023-04-15 08:08:48.460][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:48.460][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:48.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:48.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:48.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:48.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:48.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:48.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:48.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:48.510][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:48.513][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:48.514][cch$loadFileContent] Trying to load 1 files from cache: [1]: "897c6c1cf86bb233833a030ee6928dbf".
biodb.TRACE[2023-04-15 08:08:48.515][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:48.517][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content".
biodb.DEBUG[2023-04-15 08:08:48.518][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:48.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:48.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:48.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:48.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:48.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:48.527][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:48.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:48.529][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.532][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.535][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.536][private$selectFields]
biodb.TRACE[2023-04-15 08:08:48.537][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:48.538][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:48.538][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.539][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.540][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.541][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.541][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.542][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.543][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.544][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.544][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.545][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.546][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.547][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.548][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.548][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.549][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.550][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:48.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.560][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529381].
biodb.DEBUG[2023-04-15 08:08:48.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:48.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:48.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:48.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:48.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:48.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:48.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:48.569][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.572][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.575][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.576][private$selectFields]
biodb.TRACE[2023-04-15 08:08:48.576][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:48.577][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:48.578][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.578][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.579][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.580][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.581][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.581][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.582][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.583][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.584][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.584][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.585][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.586][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.587][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.587][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.588][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.589][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:48.590][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.596][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.599][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523845].
biodb.DEBUG[2023-04-15 08:08:48.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:48.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:48.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:48.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:48.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:48.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:48.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:48.608][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.614][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.614][private$selectFields]
biodb.TRACE[2023-04-15 08:08:48.615][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:48.616][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:48.617][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.617][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.618][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.619][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.620][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.620][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.621][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.622][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.623][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.623][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.624][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.625][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.626][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.626][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.627][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.628][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:48.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.635][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.638][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523844].
biodb.DEBUG[2023-04-15 08:08:48.639][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:48.639][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:48.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:48.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:48.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:48.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:48.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:48.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:48.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:48.683][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:48.685][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:48.686][cch$loadFileContent] Trying to load 1 files from cache: [1]: "56a93d3214bbb5417ad13002a40518e8".
biodb.TRACE[2023-04-15 08:08:48.687][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:48.688][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content".
biodb.DEBUG[2023-04-15 08:08:48.690][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:48.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:48.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:48.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:48.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:48.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:48.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:48.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:48.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.704][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.705][private$selectFields]
biodb.TRACE[2023-04-15 08:08:48.705][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:48.706][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:48.707][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.707][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.708][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.709][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.709][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.710][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.711][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.712][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.713][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.713][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.714][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.715][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.716][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.716][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.717][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.718][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:48.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.728][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529602].
biodb.DEBUG[2023-04-15 08:08:48.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:48.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:48.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:48.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:48.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:48.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:48.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:48.736][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.741][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.742][private$selectFields]
biodb.TRACE[2023-04-15 08:08:48.742][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:48.743][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:48.744][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.744][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.745][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.746][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.747][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.747][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.748][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.749][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.749][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.750][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.751][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.751][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.752][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.753][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.753][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.754][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:48.755][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.758][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.760][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.763][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529523].
biodb.DEBUG[2023-04-15 08:08:48.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:48.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:48.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:48.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:48.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:48.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:48.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:48.771][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.777][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.778][private$selectFields]
biodb.TRACE[2023-04-15 08:08:48.778][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:48.779][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:48.780][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.780][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.781][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.782][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.782][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.783][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.784][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.784][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.785][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.786][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.786][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:48.787][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.788][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.789][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.789][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.790][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:48.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.793][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:48.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.799][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529363].
biodb.DEBUG[2023-04-15 08:08:48.800][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:48.800][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-04-15 08:08:48.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:48.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:48.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:48.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:48.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:48.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:48.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:48.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:48.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:48.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:48.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:48.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:48.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:48.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:48.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:48.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:48.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:48.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:48.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:48.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:48.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:48.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:48.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:48.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:48.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:48.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:48.869][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:48.871][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:08:48.872][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:08:48.873][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2023-04-15 08:08:48.971][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:08:48.973][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:08:48.976][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:08:48.978][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:08:49.077][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:08:49.081][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content"
biodb.TRACE[2023-04-15 08:08:49.088][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.request"
biodb.DEBUG[2023-04-15 08:08:49.089][private$loadEntries] Creating entries from ids [1]: "167531353".
biodb.DEBUG[2023-04-15 08:08:49.090][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-15 08:08:49.091][cch$loadFileContent] Trying to load 1 files from cache: [1]: "167531353".
biodb.TRACE[2023-04-15 08:08:49.092][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-04-15 08:08:49.092][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:08:49.093][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:08:49.094][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:08:49.095][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:08:49.095][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-04-15 08:08:49.096][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2023-04-15 08:08:49.097][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167531353/XML".
biodb.DEBUG[2023-04-15 08:08:49.099][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:08:49.099][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:08:49.100][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167531353/XML".
biodb.TRACE[2023-04-15 08:08:49.213][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167531353/XML).
biodb.TRACE[2023-04-15 08:08:49.380][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167531353.xml"
biodb.DEBUG[2023-04-15 08:08:49.382][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:08:49.384][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:08:49.384][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:08:49.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:49.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:49.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:49.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:49.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:49.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:49.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:49.395][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:49.396][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:49.397][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.397][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:49.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:49.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.401][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:49.402][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:49.402][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.403][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:49.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:49.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.407][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:49.408][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:49.409][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.409][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:49.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:49.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.413][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:49.414][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:49.415][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.415][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:49.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:49.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.419][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:49.420][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:49.421][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.421][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:49.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:49.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.425][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:49.426][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:49.426][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.427][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:49.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:49.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.431][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:49.432][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:49.432][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.433][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.434][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:49.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:49.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.437][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:49.438][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:49.438][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.439][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.440][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:49.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:49.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.443][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:49.444][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:49.444][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.445][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:49.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:49.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.449][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:49.450][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:49.450][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.451][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:49.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:49.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.455][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:49.455][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:49.456][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.457][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.458][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:49.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:49.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.461][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:49.461][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:49.462][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.463][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:49.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:49.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.467][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:49.467][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:49.468][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.469][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.470][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:49.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:49.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.472][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:49.473][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:49.474][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.474][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.475][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:49.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:49.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.478][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:49.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:49.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:49.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:49.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:49.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:49.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.487][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:49.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:49.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:49.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:49.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:49.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:49.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.495][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:49.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:49.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:49.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:49.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:49.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:49.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.504][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:49.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:49.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:49.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:49.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:49.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:49.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.512][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:49.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:49.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.515][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:49.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:49.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:49.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:49.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.521][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:49.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:49.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.523][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.526][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:49.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:49.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.532][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:49.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:49.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:49.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:49.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:49.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:49.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:49.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:49.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:49.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:49.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:49.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:49.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:49.552][self$createEntryFromContent] Accession numbers: 167531353.
biodb.DEBUG[2023-04-15 08:08:49.552][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:49.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:49.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:49.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:49.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:49.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:49.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:49.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:49.571][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.578][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:49.579][private$selectFields]
biodb.TRACE[2023-04-15 08:08:49.579][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:49.580][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:49.581][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:49.582][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.582][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.583][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.584][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.584][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.585][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.586][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.586][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.587][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:49.588][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:49.589][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.589][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.590][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.591][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.591][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:49.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.595][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.601][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167531353].
biodb.DEBUG[2023-04-15 08:08:49.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:49.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:49.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:49.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:49.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:49.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:49.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:49.610][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.613][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.616][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:49.616][private$selectFields]
biodb.TRACE[2023-04-15 08:08:49.617][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:49.618][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:49.618][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:49.619][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.620][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.620][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.621][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.622][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.622][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.623][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.624][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.624][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:49.625][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:49.626][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.627][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.627][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.628][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.629][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:49.630][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.635][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.639][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [83638281].
biodb.DEBUG[2023-04-15 08:08:49.639][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:49.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:49.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:49.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:49.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:49.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:49.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:49.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.650][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.653][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:49.654][private$selectFields]
biodb.TRACE[2023-04-15 08:08:49.654][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:49.655][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:49.656][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:49.657][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.657][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.658][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.659][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.659][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.660][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.661][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.662][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.662][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:49.663][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:49.664][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.664][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.665][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.666][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.666][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:49.667][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.670][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:49.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:49.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:49.676][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167531149].
biodb.DEBUG[2023-04-15 08:08:49.677][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:49.677][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:49.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:49.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:49.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:49.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:49.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:49.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:49.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:49.709][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:49.712][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:08:49.713][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:08:49.714][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2023-04-15 08:08:49.791][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:08:49.793][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:08:49.796][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:08:49.799][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:08:49.895][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:08:49.899][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content"
biodb.TRACE[2023-04-15 08:08:49.904][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.request"
biodb.DEBUG[2023-04-15 08:08:49.906][private$loadEntries] Creating entries from ids [3]: "167530768, 167530752, 167530731".
biodb.DEBUG[2023-04-15 08:08:49.907][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2023-04-15 08:08:49.908][cch$loadFileContent] Trying to load 3 files from cache: [3]: "167530768, 167530752, 167530731".
biodb.TRACE[2023-04-15 08:08:49.909][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2023-04-15 08:08:49.910][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:08:49.910][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:08:49.911][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:08:49.912][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:08:49.912][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-04-15 08:08:49.913][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2023-04-15 08:08:49.915][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167530768,167530752,167530731/XML".
biodb.DEBUG[2023-04-15 08:08:49.916][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:08:49.917][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:08:49.918][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167530768,167530752,167530731/XML".
biodb.TRACE[2023-04-15 08:08:50.087][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167530768,167530752,167530731/XML).
biodb.TRACE[2023-04-15 08:08:50.346][private$doSaveContentToFile] Saving to cache [3]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167530768.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167530752.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167530731.xml"
biodb.DEBUG[2023-04-15 08:08:50.348][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:08:50.349][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2023-04-15 08:08:50.350][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:08:50.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:50.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:50.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:50.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:50.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:50.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:50.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:50.360][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:50.361][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:50.361][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.362][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:50.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:50.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.366][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:50.367][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:50.367][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.368][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:50.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:50.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.372][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:50.373][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:50.373][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.374][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:50.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:50.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.378][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:50.379][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:50.379][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.380][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:50.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:50.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.384][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:50.384][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:50.385][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.386][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:50.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:50.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.390][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:50.390][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:50.391][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.392][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:50.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:50.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.406][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:50.407][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:50.408][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.408][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.410][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:50.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:50.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.413][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:50.413][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:50.414][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.415][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.416][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:50.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:50.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.419][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:50.419][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:50.420][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.421][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:50.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:50.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.425][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:50.425][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:50.426][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.427][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:50.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:50.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.431][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:50.431][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:50.432][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.433][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.434][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:50.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:50.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.436][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:50.437][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:50.438][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.439][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:50.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:50.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.442][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:50.443][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:50.444][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.445][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.446][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:50.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:50.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.448][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:50.449][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:50.450][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.450][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:50.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:50.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.454][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:50.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:50.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:50.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:50.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:50.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:50.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.463][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:50.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:50.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:50.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:50.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:50.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:50.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.472][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:50.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:50.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.475][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:50.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:50.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:50.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:50.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.480][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:50.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:50.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:50.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:50.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.486][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:50.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:50.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.489][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:50.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:50.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:50.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:50.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:50.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:50.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.497][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:50.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:50.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:50.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:50.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:50.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:50.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:50.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:50.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:50.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:50.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:50.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:50.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:50.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:50.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:50.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:50.527][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:50.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:50.530][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:50.531][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:50.531][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.532][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:50.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:50.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.536][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:50.537][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:50.537][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.538][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:50.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:50.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.542][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:50.543][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:50.543][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.544][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:50.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:50.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.548][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:50.549][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:50.549][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.550][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:50.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:50.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.554][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:50.555][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:50.555][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.556][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:50.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:50.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.560][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:50.561][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:50.561][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.562][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:50.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:50.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.566][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:50.567][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:50.567][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.568][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.569][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:50.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:50.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.572][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:50.573][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:50.573][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.574][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.575][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:50.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:50.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.578][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:50.579][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:50.579][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.580][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:50.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:50.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.584][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:50.585][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:50.585][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.586][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:50.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:50.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.590][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:50.591][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:50.591][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.592][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.593][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:50.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:50.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.596][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:50.597][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:50.598][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.598][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:50.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:50.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.602][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:50.603][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:50.604][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.604][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.605][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:50.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:50.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.608][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:50.609][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:50.610][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.610][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.611][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:50.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:50.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.614][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:50.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:50.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:50.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:50.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:50.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:50.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.628][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:50.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:50.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:50.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:50.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:50.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:50.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.638][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:50.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:50.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.641][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:50.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:50.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:50.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:50.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.647][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:50.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:50.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.650][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:50.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:50.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:50.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:50.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.655][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:50.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:50.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:50.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:50.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:50.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:50.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:50.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:50.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.667][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.670][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:50.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:50.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:50.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:50.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:50.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:50.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:50.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:50.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:50.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:50.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:50.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:50.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:50.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:50.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:50.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:50.697][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:50.697][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:50.698][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.699][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:50.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:50.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.703][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:50.703][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:50.704][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.705][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:50.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:50.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.709][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:50.710][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:50.710][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.711][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:50.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:50.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.715][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:50.716][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:50.716][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.717][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:50.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:50.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.721][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:50.722][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:50.722][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.723][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:50.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:50.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.727][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:50.728][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:50.728][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.729][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:50.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:50.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.733][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:50.734][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:50.734][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.735][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.736][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:08:50.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:50.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.739][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:50.740][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:50.740][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.741][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.742][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:50.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:50.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.745][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:50.745][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:50.746][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.747][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:50.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:50.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.751][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:50.751][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:50.752][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.753][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:50.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:50.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.757][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:50.757][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:50.758][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.759][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.760][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:50.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:50.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.763][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:50.763][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:50.764][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.765][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:08:50.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:50.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.769][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:50.769][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:50.770][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.771][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.772][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:50.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:50.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.775][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:50.775][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:50.776][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.777][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.778][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:50.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:50.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.781][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:08:50.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:50.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:50.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:50.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:50.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:50.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.789][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:08:50.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:50.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:50.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:50.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:50.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:50.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.798][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:08:50.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:50.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:50.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:50.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:50.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:50.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.806][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:08:50.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:50.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:50.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:50.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:50.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:50.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.814][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:08:50.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:50.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:50.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:50.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:50.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:50.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.823][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:50.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:50.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.826][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:50.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:50.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.834][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:50.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:50.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:50.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:50.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:50.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:50.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:50.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:50.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:50.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:50.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:50.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:50.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:50.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:50.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:50.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:50.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:50.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:50.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:50.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:50.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:50.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:50.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:50.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:50.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:50.878][self$createEntryFromContent] Accession numbers: 167530768, 167530752, 167530731.
biodb.DEBUG[2023-04-15 08:08:50.879][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:50.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:50.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:50.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:50.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:50.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:50.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:50.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:50.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.891][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.894][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:50.895][private$selectFields]
biodb.TRACE[2023-04-15 08:08:50.895][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:50.896][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:50.897][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:50.897][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.898][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.899][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.899][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.900][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.901][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.902][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.902][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.903][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:50.904][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:50.904][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.905][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.906][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.906][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.907][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:50.908][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.911][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.917][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167530768].
biodb.DEBUG[2023-04-15 08:08:50.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:50.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:50.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:50.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:50.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:50.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:50.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:50.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.931][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:50.932][private$selectFields]
biodb.TRACE[2023-04-15 08:08:50.933][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:50.933][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:50.934][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:50.935][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.936][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.936][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.937][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.938][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.938][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.939][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.940][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.941][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:50.941][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:50.942][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.943][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.943][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.944][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.945][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:50.945][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.951][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.954][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167530752].
biodb.DEBUG[2023-04-15 08:08:50.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:50.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:50.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:50.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:50.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:50.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:50.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:50.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.969][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:50.969][private$selectFields]
biodb.TRACE[2023-04-15 08:08:50.970][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:50.971][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:50.971][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:50.972][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.973][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.974][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.974][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.975][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.976][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.976][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.977][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.978][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:50.978][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:50.979][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.980][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.981][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.981][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.982][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:50.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:50.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:50.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:50.991][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167530731].
biodb.DEBUG[2023-04-15 08:08:50.992][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:50.993][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:51.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:51.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:51.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:51.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:51.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:51.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:51.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:51.038][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:51.040][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:51.041][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2023-04-15 08:08:51.042][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:51.043][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2023-04-15 08:08:51.044][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:51.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:51.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:51.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:51.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:51.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:51.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:51.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:51.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.059][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.064][private$selectFields]
biodb.TRACE[2023-04-15 08:08:51.065][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:51.066][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:51.067][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.068][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.069][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.070][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.071][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.071][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.072][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.073][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.073][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.074][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.075][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.075][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.076][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.077][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.077][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.078][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:51.079][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.085][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.088][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523845].
biodb.DEBUG[2023-04-15 08:08:51.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:51.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:51.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:51.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:51.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:51.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:51.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:51.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.099][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.102][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.102][private$selectFields]
biodb.TRACE[2023-04-15 08:08:51.103][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:51.104][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:51.104][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.105][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.106][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.107][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.107][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.108][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.109][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.109][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.110][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.111][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.111][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.112][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.113][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.113][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.114][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.115][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:51.115][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.118][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.124][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523844].
biodb.DEBUG[2023-04-15 08:08:51.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:51.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:51.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:51.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:51.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:51.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:51.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:51.133][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.139][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.139][private$selectFields]
biodb.TRACE[2023-04-15 08:08:51.140][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:51.141][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:51.141][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.142][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.143][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.143][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.144][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.145][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.146][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.146][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.147][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.148][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.148][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.149][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.150][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.150][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.151][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.152][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:51.153][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.155][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.158][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.161][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523841].
biodb.DEBUG[2023-04-15 08:08:51.162][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:51.163][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:51.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:51.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:51.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:51.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:51.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:51.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:51.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:51.194][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:51.197][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:51.198][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2023-04-15 08:08:51.199][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:51.200][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2023-04-15 08:08:51.201][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:51.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:51.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:51.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:51.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:51.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:51.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:51.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:51.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.216][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.217][private$selectFields]
biodb.TRACE[2023-04-15 08:08:51.218][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:51.218][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:51.219][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.220][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.220][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.221][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.222][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.222][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.223][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.224][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.225][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.225][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.226][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.227][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.227][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.228][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.229][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.229][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:51.230][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.239][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167527736].
biodb.DEBUG[2023-04-15 08:08:51.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:51.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:51.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:51.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:51.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:51.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:51.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:51.248][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.253][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.254][private$selectFields]
biodb.TRACE[2023-04-15 08:08:51.255][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:51.255][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:51.256][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.257][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.257][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.258][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.259][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.259][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.260][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.261][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.262][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.262][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.263][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.264][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.264][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.265][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.266][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.266][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:51.267][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.270][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.296][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167513889].
biodb.DEBUG[2023-04-15 08:08:51.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:51.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:51.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:51.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:51.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:51.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:51.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:51.306][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.309][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.312][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.313][private$selectFields]
biodb.TRACE[2023-04-15 08:08:51.313][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:51.314][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:51.315][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.316][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.316][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.317][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.318][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.319][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.319][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.320][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.321][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.321][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.322][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.323][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.324][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.324][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.325][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.326][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:51.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.335][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167510581].
biodb.DEBUG[2023-04-15 08:08:51.336][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:51.337][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:51.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:51.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:51.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:51.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:51.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:51.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:51.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:51.384][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:51.386][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:08:51.387][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:08:51.388][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2023-04-15 08:08:51.464][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:08:51.467][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:08:51.470][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:08:51.472][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:08:51.570][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:08:51.574][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content"
biodb.TRACE[2023-04-15 08:08:51.580][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.request"
biodb.DEBUG[2023-04-15 08:08:51.582][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:51.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:51.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:51.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:51.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:51.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:51.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:51.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:51.591][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.597][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.598][private$selectFields]
biodb.TRACE[2023-04-15 08:08:51.598][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:51.599][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:51.600][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.600][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.601][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.602][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.602][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.603][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.604][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.605][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.605][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.606][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.607][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.607][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.608][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.609][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.609][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.610][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:51.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.614][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.620][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523845].
biodb.DEBUG[2023-04-15 08:08:51.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:51.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:51.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:51.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:51.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:51.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:51.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:51.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.631][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.634][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.635][private$selectFields]
biodb.TRACE[2023-04-15 08:08:51.635][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:51.636][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:51.637][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.637][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.638][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.639][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.640][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.640][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.641][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.642][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.642][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.643][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.644][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.644][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.645][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.646][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.647][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.647][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:51.648][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.657][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523844].
biodb.DEBUG[2023-04-15 08:08:51.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:51.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:51.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:51.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:51.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:51.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:51.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:51.665][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.668][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.671][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.672][private$selectFields]
biodb.TRACE[2023-04-15 08:08:51.672][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:51.673][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:51.674][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.674][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.675][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.676][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.677][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.677][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.678][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.679][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.679][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.680][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.681][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.681][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.682][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.683][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.683][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.684][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:51.685][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.694][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523841].
biodb.DEBUG[2023-04-15 08:08:51.701][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:51.702][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:51.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:51.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:51.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:51.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:51.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:51.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:51.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:51.735][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:51.737][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:08:51.738][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:08:51.740][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2023-04-15 08:08:51.836][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:08:51.838][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:08:51.842][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:08:51.845][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:08:51.944][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:08:51.948][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content"
biodb.TRACE[2023-04-15 08:08:51.956][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.request"
biodb.DEBUG[2023-04-15 08:08:51.957][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:51.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:51.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:51.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:51.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:51.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:51.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:51.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:51.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.973][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.973][private$selectFields]
biodb.TRACE[2023-04-15 08:08:51.974][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:51.975][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:51.975][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.976][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.977][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.978][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.978][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.979][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.980][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.980][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.981][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.982][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.983][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:51.983][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.984][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.985][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.985][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.986][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:51.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:51.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:51.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:51.996][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529602].
biodb.DEBUG[2023-04-15 08:08:51.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:51.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:51.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:52.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:52.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:52.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:52.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:52.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.010][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.011][private$selectFields]
biodb.TRACE[2023-04-15 08:08:52.012][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:52.012][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:52.013][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.014][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.015][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.015][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.016][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.017][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.017][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.018][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.019][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.020][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.020][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.021][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.022][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.022][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.023][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.024][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:52.025][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.033][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529523].
biodb.DEBUG[2023-04-15 08:08:52.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:52.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:52.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:52.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:52.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:52.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:52.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:52.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.048][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.048][private$selectFields]
biodb.TRACE[2023-04-15 08:08:52.049][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:52.050][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:52.050][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.051][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.052][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.053][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.053][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.054][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.055][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.055][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.056][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.057][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.057][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.058][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.059][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.060][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.060][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.061][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:52.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.070][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167527736].
biodb.DEBUG[2023-04-15 08:08:52.071][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:52.072][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:52.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:52.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:52.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:52.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:52.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:52.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:52.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:52.117][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:52.119][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:52.120][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8ad32143f99567438eba281a371befbc".
biodb.TRACE[2023-04-15 08:08:52.121][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:52.128][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content".
biodb.DEBUG[2023-04-15 08:08:52.131][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:52.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:52.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:52.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:52.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:52.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:52.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:52.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:52.141][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.147][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.148][private$selectFields]
biodb.TRACE[2023-04-15 08:08:52.148][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:52.149][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:52.150][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.151][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.151][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.152][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.153][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.153][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.154][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.155][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.156][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.156][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.157][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.158][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.159][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.159][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.160][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.161][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:52.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.167][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.170][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167531353].
biodb.DEBUG[2023-04-15 08:08:52.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:52.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:52.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:52.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:52.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:52.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:52.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:52.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.186][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.187][private$selectFields]
biodb.TRACE[2023-04-15 08:08:52.187][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:52.188][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:52.189][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.190][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.190][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.191][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.192][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.193][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.193][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.194][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.195][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.196][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.196][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.197][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.198][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.198][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.199][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.200][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:52.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.204][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.210][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [83638281].
biodb.DEBUG[2023-04-15 08:08:52.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:52.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:52.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:52.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:52.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:52.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:52.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:52.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.221][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.224][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.225][private$selectFields]
biodb.TRACE[2023-04-15 08:08:52.226][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:52.226][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:52.227][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.228][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.229][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.229][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.230][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.231][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.231][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.232][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.233][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.233][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.234][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.235][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.236][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.236][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.237][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.238][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:52.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.244][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.247][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167531149].
biodb.DEBUG[2023-04-15 08:08:52.248][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:52.249][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:52.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:52.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:52.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:52.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:52.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:52.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:52.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:52.280][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:52.283][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:52.284][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ead2a4c6d4c972bfbf7c3e8a0e8299c8".
biodb.TRACE[2023-04-15 08:08:52.285][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:52.286][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content".
biodb.DEBUG[2023-04-15 08:08:52.287][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:52.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:52.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:52.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:52.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:52.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:52.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:52.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:52.296][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.299][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.302][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.303][private$selectFields]
biodb.TRACE[2023-04-15 08:08:52.303][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:52.304][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:52.305][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.305][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.306][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.307][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.308][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.308][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.309][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.310][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.310][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.311][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.312][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.312][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.313][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.314][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.315][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.315][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:52.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.325][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167530768].
biodb.DEBUG[2023-04-15 08:08:52.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:52.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:52.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:52.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:52.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:52.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:52.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:52.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.336][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.339][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.340][private$selectFields]
biodb.TRACE[2023-04-15 08:08:52.341][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:52.341][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:52.342][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.343][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.343][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.344][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.345][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.345][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.346][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.352][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.353][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.354][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.355][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.356][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.357][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.358][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.359][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.360][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:52.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.366][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.369][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167530752].
biodb.DEBUG[2023-04-15 08:08:52.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:52.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:52.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:52.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:52.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:52.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:52.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:52.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.384][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.385][private$selectFields]
biodb.TRACE[2023-04-15 08:08:52.385][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:52.386][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:52.387][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.388][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.388][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.389][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.390][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.390][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.391][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.392][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.393][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.393][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.394][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.395][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.396][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.396][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.397][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.398][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:52.399][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.408][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167530731].
biodb.DEBUG[2023-04-15 08:08:52.409][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:52.409][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:52.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:52.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:52.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:52.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:52.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:52.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:52.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:52.455][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:52.458][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:52.459][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2023-04-15 08:08:52.460][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:52.461][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2023-04-15 08:08:52.462][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:52.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:52.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:52.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:52.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:52.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:52.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:52.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:52.472][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.475][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.478][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.478][private$selectFields]
biodb.TRACE[2023-04-15 08:08:52.479][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:52.480][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:52.480][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.481][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.482][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.483][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.483][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.484][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.485][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.485][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.486][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.487][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.488][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.488][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.489][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.490][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.490][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.491][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:52.492][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.498][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.501][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523845].
biodb.DEBUG[2023-04-15 08:08:52.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:52.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:52.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:52.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:52.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:52.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:52.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:52.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.516][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.516][private$selectFields]
biodb.TRACE[2023-04-15 08:08:52.517][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:52.518][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:52.518][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.519][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.520][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.521][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.521][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.522][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.523][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.523][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.524][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.525][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.526][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.526][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.527][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.528][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.528][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.529][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:52.530][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.536][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.539][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523844].
biodb.DEBUG[2023-04-15 08:08:52.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:52.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:52.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:52.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:52.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:52.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:52.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:52.548][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.553][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.554][private$selectFields]
biodb.TRACE[2023-04-15 08:08:52.555][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:52.555][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:52.556][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.557][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.558][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.558][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.559][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.560][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.560][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.561][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.562][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.562][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.563][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.564][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.565][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.565][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.566][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.567][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:52.567][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.583][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523841].
biodb.DEBUG[2023-04-15 08:08:52.584][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:52.584][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:52.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:52.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:52.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:52.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:52.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:52.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:52.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:52.617][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:52.619][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:52.620][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2023-04-15 08:08:52.621][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:52.622][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2023-04-15 08:08:52.624][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:52.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:52.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:52.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:52.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:52.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:52.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:52.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:52.633][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.639][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.640][private$selectFields]
biodb.TRACE[2023-04-15 08:08:52.640][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:52.641][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:52.642][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.642][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.643][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.644][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.645][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.645][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.646][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.647][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.647][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.648][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.649][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.649][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.650][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.651][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.652][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.652][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:52.653][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.656][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.659][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.662][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167527736].
biodb.DEBUG[2023-04-15 08:08:52.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:52.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:52.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:52.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:52.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:52.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:52.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:52.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.677][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.677][private$selectFields]
biodb.TRACE[2023-04-15 08:08:52.678][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:52.679][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:52.679][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.680][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.681][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.681][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.682][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.683][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.684][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.684][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.685][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.686][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.686][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.687][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.688][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.688][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.689][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.690][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:52.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.693][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.696][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.699][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167513889].
biodb.DEBUG[2023-04-15 08:08:52.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:52.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:52.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:52.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:52.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:52.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:52.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:52.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.714][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.715][private$selectFields]
biodb.TRACE[2023-04-15 08:08:52.715][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:52.716][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:52.717][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.717][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.718][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.719][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.719][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.720][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.721][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.722][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.722][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.723][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.724][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.724][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.725][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.726][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.726][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.727][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:52.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.734][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.737][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167510581].
biodb.DEBUG[2023-04-15 08:08:52.737][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:52.738][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:52.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:52.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:52.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:52.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:52.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:52.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:52.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:52.783][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:52.786][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:52.787][cch$loadFileContent] Trying to load 1 files from cache: [1]: "93b38cb571769a97b3321f7f5a86241a".
biodb.TRACE[2023-04-15 08:08:52.788][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:52.794][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content".
biodb.DEBUG[2023-04-15 08:08:52.796][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:52.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:52.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:52.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:52.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:52.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:52.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:52.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:52.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.812][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.813][private$selectFields]
biodb.TRACE[2023-04-15 08:08:52.813][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:52.814][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:52.815][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.816][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.816][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.817][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.818][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.818][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.819][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.820][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.821][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.821][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.822][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.823][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.823][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.824][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.825][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.826][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:52.826][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.835][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523845].
biodb.DEBUG[2023-04-15 08:08:52.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:52.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:52.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:52.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:52.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:52.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:52.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:52.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.850][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.851][private$selectFields]
biodb.TRACE[2023-04-15 08:08:52.852][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:52.852][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:52.853][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.854][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.854][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.855][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.856][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.857][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.857][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.858][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.859][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.859][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.860][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.861][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.862][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.862][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.863][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.864][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:52.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.873][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523844].
biodb.DEBUG[2023-04-15 08:08:52.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:52.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:52.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:52.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:52.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:52.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:52.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:52.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.888][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.888][private$selectFields]
biodb.TRACE[2023-04-15 08:08:52.889][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:52.890][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:52.891][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.891][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.892][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.893][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.893][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.894][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.895][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.896][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.896][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.897][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.898][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.898][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.899][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.900][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.901][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.901][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:52.902][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.908][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.911][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523841].
biodb.DEBUG[2023-04-15 08:08:52.911][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:52.912][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:52.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:52.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:52.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:52.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:52.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:52.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:52.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:52.944][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:52.946][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:52.947][cch$loadFileContent] Trying to load 1 files from cache: [1]: "405cf707472983a89dc9e0092ca888ad".
biodb.TRACE[2023-04-15 08:08:52.948][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:52.949][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content".
biodb.DEBUG[2023-04-15 08:08:52.951][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:52.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:52.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:52.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:52.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:52.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:52.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:52.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:52.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.966][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.966][private$selectFields]
biodb.TRACE[2023-04-15 08:08:52.967][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:52.968][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:52.968][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.969][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.970][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.970][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.971][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.972][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.973][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.973][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.974][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.975][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.975][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:52.976][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.977][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.977][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.978][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.979][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:52.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:52.988][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529602].
biodb.DEBUG[2023-04-15 08:08:52.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:52.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:52.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:52.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:52.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:52.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:52.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:52.997][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:52.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:52.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.003][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:53.004][private$selectFields]
biodb.TRACE[2023-04-15 08:08:53.004][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:53.005][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:53.006][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:53.006][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.007][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.008][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.008][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.009][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.015][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.016][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.017][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.018][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:53.019][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:53.020][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.021][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.022][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.022][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.023][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:53.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.033][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529523].
biodb.DEBUG[2023-04-15 08:08:53.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:53.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:53.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:53.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:53.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:53.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:53.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:53.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.048][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:53.048][private$selectFields]
biodb.TRACE[2023-04-15 08:08:53.049][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:53.050][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:53.050][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:53.051][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.052][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.053][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.053][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.054][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.055][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.055][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.056][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.057][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:53.057][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:08:53.058][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.059][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.060][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.060][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.061][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:08:53.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.068][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.071][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167527736].
biodb.DEBUG[2023-04-15 08:08:53.072][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:53.072][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-04-15 08:08:53.086][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-04-15 08:08:53.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-04-15 08:08:53.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.089][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-04-15 08:08:53.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-04-15 08:08:53.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-15 08:08:53.093][biodb::testThat]
biodb.INFO [2023-04-15 08:08:53.094][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2023-04-15 08:08:53.094][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:08:53.095][biodb::testThat]
biodb.TRACE[2023-04-15 08:08:53.097][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-04-15 08:08:53.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-04-15 08:08:53.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.100][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-04-15 08:08:53.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-04-15 08:08:53.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:53.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:53.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:53.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:53.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:53.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:53.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:53.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:53.158][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:53.160][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:53.162][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2023-04-15 08:08:53.162][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:53.163][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2023-04-15 08:08:53.165][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:53.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:53.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:53.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:53.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:53.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:53.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:53.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:53.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:53.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:53.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:53.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:53.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.208][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:53.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:53.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:53.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:53.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:53.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:53.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:53.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:53.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.225][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:53.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:53.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.228][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:53.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:53.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.249][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:53.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:53.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:53.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:53.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.255][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.258][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.261][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.263][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.266][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.269][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.272][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:53.273][private$selectFields]
biodb.TRACE[2023-04-15 08:08:53.273][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:53.274][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:53.275][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:53.275][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:53.276][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:53.277][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.278][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.278][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.279][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.280][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.280][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.281][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.282][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.283][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.283][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.284][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.285][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.285][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.286][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.287][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.288][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.288][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.289][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.290][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.291][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.291][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.292][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.293][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:53.293][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:53.294][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.295][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.296][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:53.296][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:53.297][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.298][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.298][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.299][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.300][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.301][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.301][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:53.302][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:53.303][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.303][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.304][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.305][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.305][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.306][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.307][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.308][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.308][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.309][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.310][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:53.310][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:53.311][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.312][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.312][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.313][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.314][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.314][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.315][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.316][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.317][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.317][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.318][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.319][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.319][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.320][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.321][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:53.322][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:53.322][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.323][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.324][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.324][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.325][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.326][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.326][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.327][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.328][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.329][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.329][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.330][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.331][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.331][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.332][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.333][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.334][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.334][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.335][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.336][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.336][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.337][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.338][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:53.338][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:53.339][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.340][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.341][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:53.341][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:53.342][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.343][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.343][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.344][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.345][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.345][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.346][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:53.347][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:53.348][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.348][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.349][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.350][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.350][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.351][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.352][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.352][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.353][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.354][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.354][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:53.355][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:53.356][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.357][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.357][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.358][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.359][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.359][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.360][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.361][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.361][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.362][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.363][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.364][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.364][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.365][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.366][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:53.366][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:53.367][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:53.368][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:53.369][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.369][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.370][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.371][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.371][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.372][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.373][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.373][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.374][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.375][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.376][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.376][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.377][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.378][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.378][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.379][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.380][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.380][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.381][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.382][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.382][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.383][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.384][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:53.385][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:53.385][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.386][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.387][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:53.387][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:53.388][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.389][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.389][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.390][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.391][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.392][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.392][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:53.393][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:53.394][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.394][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.395][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.396][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.397][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.397][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.398][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.399][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.399][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.400][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.401][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:53.402][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:53.402][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.403][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.404][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.404][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.405][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.406][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.406][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.407][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.408][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.408][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.409][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.410][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.411][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.411][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.412][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:08:53.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:53.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:53.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:53.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:53.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:53.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:53.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.471][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:53.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:53.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.474][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:53.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:53.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.477][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:53.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:53.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:53.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:53.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.483][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:53.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:53.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:53.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:53.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.495][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.498][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:53.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:53.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.501][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:53.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:53.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.504][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:53.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:53.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.524][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:53.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:53.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.527][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:53.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:53.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.530][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:53.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:53.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.536][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.542][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.544][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.547][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.550][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.553][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.556][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.566][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167529381, N-methyl-1-vinylsulfonyl-azetidine-3-carboxamide, 1-ethenylsulfonyl-N-methyl-3-azetidinecarboxamide, 1-ethenylsulfonyl-N-methylazetidine-3-carboxamide, 1-ethenylsulfonyl-N-methyl-azetidine-3-carboxamide, ...].
biodb.DEBUG[2023-04-15 08:08:53.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:53.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:53.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:53.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:53.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:53.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:53.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:53.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:53.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:53.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:53.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:53.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.583][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.598][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.609][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:53.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:53.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.612][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:53.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:53.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:53.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:53.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:53.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:53.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.626][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:53.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:53.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.629][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:53.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:53.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.643][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:53.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:53.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.646][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:53.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:53.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.654][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.657][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.660][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.663][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.666][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:53.666][private$selectFields]
biodb.TRACE[2023-04-15 08:08:53.667][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:53.668][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:53.668][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:53.675][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:53.676][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:53.677][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.678][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.679][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.680][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.680][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.681][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.682][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.682][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.683][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.684][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.684][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.685][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.686][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.687][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.687][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.688][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.689][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.689][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.690][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.691][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.692][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.692][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.693][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:53.694][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:53.695][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.695][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.696][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:53.697][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:53.698][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.698][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.699][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.700][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.700][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.701][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.702][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:53.703][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:53.703][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.704][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.705][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.705][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.706][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.707][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.707][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.708][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.709][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.710][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.710][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:53.711][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:53.712][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.712][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.713][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.714][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.714][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.715][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.716][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.717][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.717][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.718][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.719][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.719][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.720][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.721][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.722][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:53.722][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:53.723][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.724][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.725][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.725][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.726][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.727][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.727][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.728][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.729][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.730][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.730][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.731][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.732][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.732][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.733][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.734][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.735][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.735][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.736][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.737][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.737][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.738][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.739][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:53.740][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:53.740][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.741][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.742][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:53.742][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:53.743][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.744][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.744][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.745][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.746][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.747][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.747][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:53.748][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:53.749][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.749][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.750][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.751][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.751][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.752][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.753][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.754][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.754][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.755][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.756][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:53.756][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:53.757][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.758][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.758][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.759][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.760][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.761][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.761][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.762][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.763][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.763][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.764][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.765][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.766][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.766][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.767][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:53.768][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:53.768][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:53.769][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:53.770][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.770][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.771][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.772][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.773][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.773][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.774][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.775][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.775][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.776][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.777][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.778][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.778][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.779][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.780][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.780][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.781][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.782][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.782][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.783][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.784][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.785][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.785][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:53.786][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:53.787][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.787][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.788][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:53.789][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:53.789][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.790][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.791][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.792][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.792][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.793][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.794][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:53.794][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:53.795][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.796][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.797][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.797][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.798][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.799][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.799][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.800][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.801][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.802][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.802][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:53.803][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:53.804][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.804][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.805][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.806][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.806][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.807][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.808][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.809][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.809][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.810][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.811][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.811][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.812][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.813][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.813][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:08:53.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:53.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:53.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:53.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:53.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:53.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:53.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:53.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.866][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:53.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:53.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.869][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:53.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:53.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.872][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:53.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:53.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:53.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:53.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:53.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:53.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:53.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:53.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:53.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.899][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:53.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:53.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.902][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:53.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:53.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.905][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:53.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:53.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:53.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:53.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.926][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:53.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:53.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.928][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:53.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:53.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.931][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:53.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:53.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.940][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:53.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.943][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.946][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:53.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.952][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.955][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.958][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:53.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.966][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167522372, N-[cyano(5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-3-yl)methyl]formamide, N-[cyano(5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-3-yl)methyl]formamide, N-[cyano(5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-3-yl)methyl]formamide, N-[cyano(5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-3-yl)methyl]methanamide, ...].
biodb.DEBUG[2023-04-15 08:08:53.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:53.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:53.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:53.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:53.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:53.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:53.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:53.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:53.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:53.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:53.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:53.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:53.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:53.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:53.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:53.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:53.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:53.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.010][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:54.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:54.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.013][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:54.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:54.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:54.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:54.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:54.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:54.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.027][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:54.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:54.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.030][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:54.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:54.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:54.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:54.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.047][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:54.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:54.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.049][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.055][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.058][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.061][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.064][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.066][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:54.067][private$selectFields]
biodb.TRACE[2023-04-15 08:08:54.068][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:54.068][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:54.069][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:54.070][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:54.071][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:54.071][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.072][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.073][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.073][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.074][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.075][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.075][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.076][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.077][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.078][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.078][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.079][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.080][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.080][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.081][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.082][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.082][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.083][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.084][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.085][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.085][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.086][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.087][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:54.087][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:54.088][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.089][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.089][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:54.090][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:54.091][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.092][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.092][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.093][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.094][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.094][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.095][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:54.096][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:54.096][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.097][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.098][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.099][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.099][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.100][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.101][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.102][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.102][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.103][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.104][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:54.104][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:54.105][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.111][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.112][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.113][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.114][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.115][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.116][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.117][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.118][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.118][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.119][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.120][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.120][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.121][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.122][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:54.123][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:54.123][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.124][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.125][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.125][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.126][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.127][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.127][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.128][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.129][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.130][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.130][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.131][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.132][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.132][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.133][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.134][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.135][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.135][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.136][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.137][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.137][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.138][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.139][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:54.140][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:54.140][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.141][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.142][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:54.142][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:54.143][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.144][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.144][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.145][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.146][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.146][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.147][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:54.148][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:54.149][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.149][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.150][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.151][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.152][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.152][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.153][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.154][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.154][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.155][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.156][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:54.156][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:54.157][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.158][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.159][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.159][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.160][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.161][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.162][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.162][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.163][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.164][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.164][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.165][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.166][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.167][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.167][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:54.168][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:54.169][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:54.170][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:54.170][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.171][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.172][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.172][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.173][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.174][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.175][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.175][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.176][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.177][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.177][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.178][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.179][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.180][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.180][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.181][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.182][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.182][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.183][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.184][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.184][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.185][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.186][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:54.187][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:54.187][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.188][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.189][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:54.189][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:54.190][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.191][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.191][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.192][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.193][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.194][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.194][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:54.195][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:54.196][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.196][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.197][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.198][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.199][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.199][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.200][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.201][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.202][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.202][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.203][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:54.204][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:54.204][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.205][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.206][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.206][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.207][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.208][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.209][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.209][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.210][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.211][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.211][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.212][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.213][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.213][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.214][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:08:54.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:54.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:54.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:54.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:54.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:54.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:54.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.261][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.267][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:54.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:54.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.270][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:54.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:54.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.273][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:54.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:54.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:54.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:54.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:54.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:54.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.281][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:54.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:54.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.287][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.293][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:54.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:54.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.296][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:54.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:54.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.299][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:54.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:54.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.319][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:54.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:54.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.322][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:54.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:54.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.330][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:54.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:54.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.338][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.343][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.346][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.349][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.352][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.355][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.358][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.367][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167522082, N-[1-cyano-2-(5,6-dihydro-4H-pyrrolo[1,2-b]pyrazol-3-yl)ethyl]formamide, N-[1-cyano-2-(5,6-dihydro-4H-pyrrolo[1,2-b]pyrazol-3-yl)ethyl]formamide, N-[1-cyano-2-(5,6-dihydro-4H-pyrrolo[1,2-b]pyrazol-3-yl)ethyl]formamide, N-[1-cyano-2-(5,6-dihydro-4H-pyrrolo[1,2-b]pyrazol-3-yl)ethyl]methanamide, ...].
biodb.DEBUG[2023-04-15 08:08:54.368][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:54.369][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:54.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:54.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:54.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:54.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:54.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:54.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:54.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:54.403][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:54.406][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:54.407][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2023-04-15 08:08:54.408][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:54.409][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2023-04-15 08:08:54.410][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:54.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:54.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:54.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:54.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:54.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:54.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:54.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:54.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:54.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:54.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:54.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:54.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.454][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:54.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:54.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.457][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:54.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:54.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:54.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:54.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:54.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:54.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.472][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:54.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:54.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.474][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:54.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:54.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.489][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:54.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:54.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:54.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:54.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.500][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.503][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.506][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.509][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.512][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:54.512][private$selectFields]
biodb.TRACE[2023-04-15 08:08:54.513][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:54.514][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:54.514][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:54.515][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:54.516][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:54.517][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.517][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.518][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.519][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.519][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.520][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.521][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.522][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.522][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.523][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.524][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.524][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.525][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.526][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.526][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.527][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.528][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.529][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.529][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.530][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.531][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.531][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.532][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:54.533][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:54.533][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.534][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.535][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:54.536][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:54.536][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.537][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.538][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.538][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.539][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.540][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.540][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:54.541][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:54.542][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.542][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.543][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.544][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.550][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.551][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.552][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.553][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.554][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.555][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.556][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:54.557][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:54.557][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.558][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.559][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.560][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.560][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.561][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.562][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.562][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.563][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.564][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.565][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.565][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.566][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.567][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.567][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:54.568][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:54.569][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.570][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.570][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.571][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.572][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.573][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.573][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.574][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.575][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.575][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.576][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.577][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.578][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.578][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.579][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.580][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.580][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.581][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.582][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.583][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.583][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.584][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.585][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:54.585][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:54.586][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.587][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.587][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:54.588][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:54.589][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.590][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.590][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.591][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.592][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.592][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.593][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:54.594][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:54.595][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.595][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.596][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.597][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.597][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.598][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.599][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.600][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.600][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.601][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.602][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:54.603][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:54.604][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.604][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.605][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.606][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.606][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.607][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.608][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.609][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.609][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.610][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.611][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.612][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.612][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.613][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.614][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:54.614][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:54.615][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:54.616][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:54.617][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.617][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.618][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.619][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.619][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.620][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.621][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.621][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.622][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.623][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.624][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.624][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.625][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.626][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.626][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.627][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.628][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.628][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.629][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.630][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.631][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.631][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.632][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:54.633][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:54.633][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.634][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.635][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:54.636][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:54.636][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.637][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.638][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.638][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.639][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.640][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.640][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:54.641][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:54.642][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.642][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.643][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.644][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.645][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.645][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.646][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.647][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.647][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.648][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.649][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:54.650][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:54.650][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.651][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.652][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.652][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.653][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.654][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.654][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.655][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.656][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.657][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.657][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.658][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.659][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.659][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.660][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:08:54.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:54.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:54.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:54.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:54.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:54.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:54.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.713][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:54.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:54.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.716][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:54.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:54.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.719][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:54.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:54.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:54.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:54.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:54.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:54.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:54.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:54.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.739][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:54.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:54.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.742][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:54.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:54.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.745][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:54.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:54.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:54.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:54.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.774][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:54.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:54.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.777][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:54.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:54.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.780][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.783][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.789][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.792][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.795][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.798][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.801][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.804][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.813][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167514507, methyl 4,7-difluoro-1-oxo-indane-2-carboxylate, 4,7-difluoro-3-oxo-1,2-dihydroindene-2-carboxylic acid methyl ester, methyl 4,7-difluoro-3-oxo-1,2-dihydroindene-2-carboxylate, methyl 4,7-bis(fluoranyl)-3-oxidanylidene-1,2-dihydroindene-2-carboxylate, ...].
biodb.DEBUG[2023-04-15 08:08:54.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:54.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:54.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:54.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:54.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:54.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:54.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:54.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:54.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:54.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:54.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:54.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.857][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:54.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:54.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.859][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:54.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:54.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:54.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:54.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:54.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:54.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.874][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:54.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:54.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.877][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:54.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:54.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.891][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:54.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:54.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:54.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:54.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.896][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.899][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.902][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.905][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.908][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.911][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.914][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:54.914][private$selectFields]
biodb.TRACE[2023-04-15 08:08:54.915][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:54.916][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:54.916][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:54.917][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:54.918][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:54.918][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.919][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.920][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.921][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.921][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.922][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.923][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.923][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.924][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.925][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.925][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.926][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.927][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.928][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.928][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.929][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.930][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.930][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.931][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.932][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.932][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.933][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.934][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:54.935][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:54.935][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.936][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.937][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:54.937][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:54.938][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.939][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.939][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.940][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.941][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.941][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.942][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:54.943][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:54.944][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.944][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.945][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.946][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.946][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.947][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.948][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.948][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:54.949][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.950][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.950][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:54.951][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:54.952][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.953][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.953][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.954][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:54.955][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.955][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.956][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.957][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:54.957][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.958][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.959][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.960][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:54.960][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.961][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.962][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:54.962][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:54.963][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.964][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.964][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.965][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:54.966][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.967][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.967][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.968][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:54.969][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.969][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.970][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.971][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:54.971][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.972][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.973][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.974][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:54.974][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.975][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.976][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.976][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:54.977][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.978][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.978][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:54.979][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:54.980][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.986][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.987][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:54.988][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:54.989][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.990][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.991][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.992][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:54.992][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.993][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.994][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:54.994][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:54.995][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.996][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.996][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.997][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:54.998][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:54.999][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:54.999][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.000][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.001][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.001][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.002][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:55.003][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:55.004][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.004][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.005][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.006][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.007][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.007][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.008][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.009][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.009][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.010][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.011][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.012][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.012][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.013][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.014][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:55.014][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:55.015][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:55.016][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:55.017][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.017][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.018][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.019][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.019][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.020][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.021][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.022][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.022][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.023][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.024][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.024][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.025][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.026][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.026][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.027][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.028][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.029][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.029][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.030][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.031][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.031][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.032][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:55.033][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:55.034][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.034][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.035][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:55.036][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:55.036][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.037][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.038][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.039][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.039][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.040][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.041][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:55.042][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:55.042][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.043][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.044][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.044][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.045][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.046][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.046][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.047][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.048][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.049][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.049][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:55.050][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:55.051][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.051][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.052][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.053][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.054][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.054][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.055][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.056][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.056][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.057][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.058][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.059][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.059][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.060][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.061][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:08:55.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:55.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:55.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:55.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:55.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:55.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:55.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.090][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.114][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:55.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:55.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.117][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:55.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:55.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.120][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:55.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:55.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:55.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:55.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:55.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:55.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:55.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:55.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.137][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.140][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:55.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:55.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.143][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:55.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:55.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.145][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:55.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:55.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.166][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:55.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:55.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.168][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:55.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:55.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:55.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:55.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.183][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.186][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.194][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.213][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167491345, 2-(2-fluoro-4,5-dihydroxy-cyclohexyl)ethylphosphonous acid, 2-(2-fluoro-4,5-dihydroxycyclohexyl)ethylphosphonous acid, 2-(2-fluoro-4,5-dihydroxycyclohexyl)ethylphosphonous acid, 2-[2-fluoranyl-4,5-bis(oxidanyl)cyclohexyl]ethylphosphonous acid, ...].
biodb.DEBUG[2023-04-15 08:08:55.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:55.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:55.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:55.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:55.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:55.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:55.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:55.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:55.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:55.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:55.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:55.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.257][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:55.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:55.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.260][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:55.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:55.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:55.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:55.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:55.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:55.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.274][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:55.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:55.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.277][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:55.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:55.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.291][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:55.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:55.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:55.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:55.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.297][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.306][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.309][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.312][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.315][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:55.315][private$selectFields]
biodb.TRACE[2023-04-15 08:08:55.316][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:55.317][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:55.317][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:55.318][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:55.319][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:55.320][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.320][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.321][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.322][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.322][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.323][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.324][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.325][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.325][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.326][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.327][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.327][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.328][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.329][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.329][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.330][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.331][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.331][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.332][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.333][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.334][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.334][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.335][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:55.336][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:55.336][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.337][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.338][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:55.338][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:55.339][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.340][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.341][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.341][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.342][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.343][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.343][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:55.344][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:55.345][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.345][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.346][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.347][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.347][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.348][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.349][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.350][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.350][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.351][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.352][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:55.352][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:55.353][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.354][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.354][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.355][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.356][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.357][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.357][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.358][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.359][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.359][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.360][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.361][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.361][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.362][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.363][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:55.364][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:55.364][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.365][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.366][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.366][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.367][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.368][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.368][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.369][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.370][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.370][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.371][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.372][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.373][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.373][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.374][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.375][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.375][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.376][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.377][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.377][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.378][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.379][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.379][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:55.380][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:55.381][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.382][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.382][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:55.383][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:55.384][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.384][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.385][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.386][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.386][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.387][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.388][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:55.389][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:55.389][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.390][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.391][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.391][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.392][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.393][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.393][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.394][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.395][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.395][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.396][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:55.397][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:55.398][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.398][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.399][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.400][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.400][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.401][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.402][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.403][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.403][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.404][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.405][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.405][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.406][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.407][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.408][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:55.408][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:55.409][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:55.410][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:55.411][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.411][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.412][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.413][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.414][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.414][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.415][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.416][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.422][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.423][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.424][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.425][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.426][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.427][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.427][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.428][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.429][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.430][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.430][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.431][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.432][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.432][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.433][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:55.434][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:55.435][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.435][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.436][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:55.437][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:55.437][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.438][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.439][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.440][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.440][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.441][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.442][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:55.442][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:55.443][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.444][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.444][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.445][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.446][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.447][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.447][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.448][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.449][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.449][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.450][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:55.451][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:55.452][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.452][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.453][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.454][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.454][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.455][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.456][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.456][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.457][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.458][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.458][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.459][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.460][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.461][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.461][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:08:55.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:55.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:55.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:55.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:55.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:55.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:55.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.486][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.515][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:55.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:55.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.518][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:55.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:55.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.521][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:55.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:55.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:55.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:55.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:55.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:55.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:55.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:55.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.538][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.541][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:55.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:55.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.544][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:55.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:55.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.547][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:55.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:55.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.567][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:55.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:55.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.570][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:55.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:55.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.573][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:55.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:55.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.585][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.587][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.590][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.593][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.596][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.599][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.607][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167438444, oxiran-2-ylmethyl 3,4,5-trihydroxybenzoate, 3,4,5-trihydroxybenzoic acid 2-oxiranylmethyl ester, oxiran-2-ylmethyl 3,4,5-trihydroxybenzoate, oxiran-2-ylmethyl 3,4,5-tris(oxidanyl)benzoate, ...].
biodb.DEBUG[2023-04-15 08:08:55.608][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:55.609][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:55.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:55.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:55.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:55.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:55.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:55.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:55.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:55.652][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:55.655][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:55.656][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2023-04-15 08:08:55.657][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:55.658][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2023-04-15 08:08:55.659][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:55.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:55.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:55.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:55.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:55.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:55.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:55.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:55.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:55.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:55.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:55.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:55.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.677][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.704][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:55.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:55.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.706][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:55.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:55.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.709][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:55.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:55.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:55.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:55.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.721][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:55.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:55.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.724][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:55.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:55.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.738][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:55.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:55.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.741][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:55.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:55.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.753][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.755][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.758][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.761][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:08:55.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:08:55.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.764][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:08:55.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:08:55.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.767][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:55.768][private$selectFields]
biodb.TRACE[2023-04-15 08:08:55.768][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:55.769][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:55.770][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:55.770][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:55.771][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:55.772][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.772][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.773][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.774][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.775][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.775][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.776][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.777][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.777][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.778][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.779][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.779][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.780][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.781][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.781][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.782][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.783][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.784][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.784][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.785][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.786][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.786][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.787][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:55.788][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:55.788][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.789][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.790][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:55.791][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:55.791][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.792][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.793][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.793][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.794][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.795][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.795][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:55.796][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:55.797][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.797][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.798][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.799][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.800][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.800][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.801][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.802][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.802][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.803][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.804][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:55.805][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:55.805][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.806][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.807][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.807][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.808][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.809][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.809][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.810][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.811][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.812][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.812][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.813][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.814][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.814][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.815][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:08:55.816][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:08:55.816][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.817][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.818][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:55.819][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:55.819][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.820][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.821][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.822][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.822][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.823][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.824][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.824][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.825][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.826][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.826][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.827][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.828][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.828][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.829][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.830][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.831][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.831][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.832][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.833][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.833][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.834][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.835][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:55.835][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:55.836][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.837][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.837][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:55.838][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:55.839][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.840][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.840][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.841][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.842][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.842][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.843][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:55.844][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:55.845][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.845][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.846][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.847][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.847][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.848][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.849][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.849][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.850][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.851][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.857][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:55.858][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:55.859][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.860][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.861][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.862][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.863][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.864][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.864][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.865][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.866][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.866][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.867][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.868][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.869][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.869][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.870][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:08:55.871][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:08:55.871][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.872][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.873][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:55.873][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:55.874][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:55.875][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:55.876][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.876][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.877][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.878][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.879][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.879][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.880][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.881][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.881][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.882][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.883][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.883][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.884][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.885][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.886][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.886][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.887][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.888][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.888][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.889][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.890][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.890][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.891][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:55.892][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:55.893][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.893][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.894][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:55.895][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:55.895][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.896][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.897][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.898][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.898][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.899][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.900][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:55.900][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:55.901][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.902][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.902][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.903][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:55.904][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.905][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.905][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.906][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:55.907][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.907][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.908][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:55.909][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:55.910][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.910][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.911][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.912][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:55.913][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.913][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.914][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.915][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:55.916][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.916][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.917][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.918][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:55.919][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.919][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.920][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:08:55.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:55.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:55.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:55.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:55.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:55.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:55.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:55.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.944][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:55.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:55.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:55.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.965][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:55.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.973][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:55.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:55.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.976][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:55.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:55.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.979][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:55.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:55.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:55.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:55.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:55.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:55.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:55.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:55.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:55.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:55.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:55.999][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:56.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:56.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.002][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:56.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:56.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.005][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:56.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:56.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.026][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:56.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:56.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.028][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:56.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:56.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.031][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:56.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:56.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.034][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.043][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.046][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.049][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.051][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.054][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.057][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.065][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167529381, N-methyl-1-vinylsulfonyl-azetidine-3-carboxamide, 1-ethenylsulfonyl-N-methyl-3-azetidinecarboxamide, 1-ethenylsulfonyl-N-methylazetidine-3-carboxamide, 1-ethenylsulfonyl-N-methyl-azetidine-3-carboxamide, ...].
biodb.DEBUG[2023-04-15 08:08:56.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:56.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:56.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:56.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:56.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:56.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:56.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:56.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:56.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:56.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:56.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:56.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.090][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.117][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:56.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:56.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.119][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:56.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:56.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:56.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:56.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:56.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:56.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.134][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:56.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:56.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.137][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:56.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:56.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.152][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:56.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:56.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.154][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:56.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:56.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.160][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.166][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.169][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.172][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.174][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:08:56.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:08:56.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.177][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:08:56.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:08:56.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.180][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:56.181][private$selectFields]
biodb.TRACE[2023-04-15 08:08:56.182][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:56.182][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:56.183][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:56.184][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:56.184][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:56.185][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.186][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.186][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.187][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.188][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.189][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.189][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.190][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.191][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.191][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.192][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.193][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.194][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.194][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.195][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.196][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.196][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.197][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.198][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.198][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.199][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.200][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.201][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:56.201][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:56.202][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.203][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.203][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:56.204][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:56.205][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.205][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.206][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.207][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.208][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.208][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.209][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:56.210][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:56.210][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.211][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.212][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.213][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.213][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.214][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.215][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.215][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.216][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.217][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.217][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:56.218][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:56.219][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.220][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.220][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.221][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.222][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.222][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.223][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.224][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.225][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.225][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.226][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.227][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.228][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.228][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.229][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:08:56.230][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:08:56.230][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.231][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.232][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:56.233][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:56.233][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.234][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.235][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.236][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.236][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.237][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.238][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.238][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.239][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.240][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.240][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.241][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.242][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.242][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.243][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.244][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.245][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.245][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.246][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.247][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.247][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.248][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.249][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:56.249][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:56.250][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.251][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.252][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:56.252][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:56.253][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.254][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.254][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.255][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.256][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.256][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.257][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:56.258][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:56.259][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.259][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.260][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.261][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.261][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.262][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.263][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.263][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.264][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.265][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.266][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:56.266][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:56.267][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.268][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.268][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.269][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.270][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.270][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.271][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.272][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.273][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.273][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.274][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.275][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.275][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.276][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.277][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:08:56.277][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:08:56.278][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.279][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.280][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:56.280][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:56.281][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:56.282][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:56.282][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.283][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.284][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.285][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.285][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.286][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.287][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.296][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.297][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.298][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.299][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.300][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.301][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.302][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.302][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.303][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.304][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.305][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.305][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.306][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.307][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.308][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.308][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:56.309][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:56.310][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.310][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.311][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:56.312][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:56.313][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.313][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.314][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.315][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.315][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.316][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.317][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:56.317][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:56.318][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.319][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.320][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.320][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.321][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.322][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.323][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.323][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.324][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.325][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.326][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:56.326][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:56.327][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.328][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.329][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.329][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.330][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.331][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.331][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.332][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.333][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.334][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.334][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.335][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.336][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.336][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.337][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:08:56.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:56.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:56.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:56.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:56.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:56.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:56.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.390][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:56.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:56.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.393][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:56.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:56.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.396][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:56.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:56.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:56.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:56.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:56.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:56.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:56.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:56.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.416][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:56.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:56.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.419][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:56.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:56.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.422][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:56.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:56.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.442][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:56.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:56.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.445][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:56.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:56.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:56.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:56.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.451][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.459][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.462][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.465][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.468][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.471][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.474][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.482][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167522372, N-[cyano(5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-3-yl)methyl]formamide, N-[cyano(5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-3-yl)methyl]formamide, N-[cyano(5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-3-yl)methyl]formamide, N-[cyano(5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-3-yl)methyl]methanamide, ...].
biodb.DEBUG[2023-04-15 08:08:56.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:56.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:56.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:56.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:56.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:56.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:56.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:56.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:56.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:56.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:56.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:56.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.534][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:56.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:56.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.537][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:56.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:56.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.540][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:56.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:56.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:56.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:56.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.545][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.551][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:56.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:56.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.554][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:56.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:56.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.569][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:56.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:56.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.572][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:56.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:56.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.577][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.580][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.583][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.586][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.589][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.592][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:08:56.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:08:56.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.595][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:08:56.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:08:56.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.597][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:56.598][private$selectFields]
biodb.TRACE[2023-04-15 08:08:56.599][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:56.599][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:56.600][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:56.601][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:56.602][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:56.602][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.603][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.604][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.604][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.605][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.606][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.606][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.607][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.608][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.609][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.609][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.610][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.611][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.611][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.612][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.613][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.614][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.614][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.615][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.616][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.617][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.617][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.618][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:56.619][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:56.619][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.620][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.621][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:56.621][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:56.622][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.623][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.624][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.624][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.625][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.626][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.627][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:56.627][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:56.628][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.629][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.629][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.630][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.631][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.632][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.632][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.633][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.634][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.634][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.635][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:56.636][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:56.636][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.637][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.638][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.639][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.639][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.640][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.641][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.641][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.642][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.643][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.643][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.644][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.645][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.646][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.646][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:08:56.647][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:08:56.648][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.648][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.649][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:56.650][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:56.651][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.651][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.652][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.653][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.653][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.654][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.655][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.655][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.656][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.657][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.657][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.658][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.659][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.660][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.660][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.661][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.662][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.662][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.663][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.664][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.664][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.665][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.666][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:56.667][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:56.667][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.668][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.669][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:56.669][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:56.670][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.671][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.671][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.672][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.673][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.673][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.674][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:56.675][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:56.676][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.676][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.677][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.678][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.678][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.679][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.680][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.680][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.681][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.682][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.682][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:56.683][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:56.684][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.685][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.685][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.686][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.687][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.687][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.688][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.689][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.689][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.690][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.691][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.692][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.692][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.693][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.694][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:08:56.694][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:08:56.695][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.696][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.696][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:56.697][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:56.698][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:56.699][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:56.699][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.700][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.701][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.701][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.702][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.703][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.703][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.704][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.705][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.705][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.706][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.707][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.708][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.708][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.709][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.710][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.710][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.711][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.712][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.713][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.713][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.714][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.715][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:56.715][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:56.716][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.717][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.717][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:56.718][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:56.719][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.720][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.720][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.721][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.722][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.722][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.723][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:56.724][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:56.724][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.725][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.726][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.727][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.727][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.728][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.729][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.735][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.736][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.737][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.738][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:56.739][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:56.740][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.741][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.741][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.742][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.743][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.744][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.744][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.745][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.746][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.746][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.747][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.748][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.749][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.749][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.750][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:08:56.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:56.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:56.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:56.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:56.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:56.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:56.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.765][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.804][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:56.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:56.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.806][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:56.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:56.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.809][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:56.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:56.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:56.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:56.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.815][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:56.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:56.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:56.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:56.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:56.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.830][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:56.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:56.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.833][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:56.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:56.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.836][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:56.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:56.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:56.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:56.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:56.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:56.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.860][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:56.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:56.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.862][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:56.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:56.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.865][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.871][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:56.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.874][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.877][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.880][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:56.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.883][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.885][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.888][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:56.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.897][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167522082, N-[1-cyano-2-(5,6-dihydro-4H-pyrrolo[1,2-b]pyrazol-3-yl)ethyl]formamide, N-[1-cyano-2-(5,6-dihydro-4H-pyrrolo[1,2-b]pyrazol-3-yl)ethyl]formamide, N-[1-cyano-2-(5,6-dihydro-4H-pyrrolo[1,2-b]pyrazol-3-yl)ethyl]formamide, N-[1-cyano-2-(5,6-dihydro-4H-pyrrolo[1,2-b]pyrazol-3-yl)ethyl]methanamide, ...].
biodb.DEBUG[2023-04-15 08:08:56.897][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:56.898][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:56.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:56.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:56.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:56.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:56.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:56.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:56.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:56.931][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:56.934][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:56.935][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2023-04-15 08:08:56.936][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:56.937][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2023-04-15 08:08:56.938][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:56.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:56.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:56.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:56.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:56.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:56.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:56.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:56.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:56.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:56.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:56.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:56.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:56.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:56.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:56.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:56.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:56.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.989][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:56.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:56.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.992][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:56.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:56.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:56.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:56.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:56.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:56.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:56.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:56.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.007][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:57.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:57.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.010][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:57.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:57.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.024][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:57.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:57.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.027][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:57.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:57.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.036][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.039][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.042][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.047][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:08:57.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:08:57.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.050][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:08:57.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:08:57.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.053][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:57.054][private$selectFields]
biodb.TRACE[2023-04-15 08:08:57.054][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:57.055][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:57.056][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:57.057][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:57.057][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:57.058][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.059][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.059][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.060][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.061][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.062][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.062][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.063][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.064][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.064][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.065][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.066][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.067][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.067][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.068][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.069][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.069][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.070][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.071][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.071][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.072][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.073][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.074][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:57.074][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:57.075][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.076][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.076][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:57.077][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:57.078][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.078][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.079][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.080][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.081][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.081][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.082][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:57.083][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:57.083][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.084][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.085][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.085][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.086][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.087][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.088][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.088][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.089][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.090][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.090][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:57.091][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:57.092][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.092][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.093][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.094][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.094][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.095][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.096][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.097][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.097][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.098][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.099][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.099][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.100][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.101][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.101][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:08:57.102][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:08:57.103][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.104][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.104][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:57.105][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:57.106][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.106][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.107][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.108][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.108][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.109][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.110][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.111][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.111][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.112][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.113][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.113][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.114][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.115][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.115][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.116][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.117][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.118][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.118][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.119][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.120][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.120][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.121][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:57.122][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:57.123][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.123][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.124][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:57.125][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:57.125][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.126][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.127][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.128][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.128][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.129][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.130][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:57.130][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:57.131][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.132][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.133][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.133][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.134][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.135][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.135][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.136][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.137][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.138][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.138][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:57.139][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:57.140][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.140][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.141][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.142][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.143][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.143][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.144][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.145][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.145][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.146][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.147][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.148][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.148][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.149][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.150][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:08:57.150][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:08:57.151][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.152][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.152][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:57.153][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:57.154][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:57.155][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:57.155][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.156][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.157][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.157][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.158][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.159][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.159][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.160][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.161][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.162][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.162][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.163][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.164][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.164][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.165][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.166][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.166][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.167][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.173][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.174][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.175][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.176][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.177][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:57.178][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:57.179][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.180][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.181][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:57.182][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:57.182][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.183][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.184][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.184][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.185][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.186][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.187][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:57.187][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:57.188][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.189][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.189][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.190][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.191][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.191][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.192][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.193][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.194][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.194][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.195][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:57.196][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:57.196][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.197][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.198][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.199][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.199][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.200][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.201][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.201][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.202][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.203][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.203][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.204][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.205][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.206][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.206][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:08:57.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:57.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:57.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:57.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:57.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:57.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:57.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.252][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.260][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:57.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:57.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.263][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:57.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:57.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.266][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:57.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:57.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:57.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:57.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:57.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:57.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:57.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:57.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.281][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.286][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:57.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:57.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.289][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:57.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:57.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.292][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:57.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:57.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.312][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:57.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:57.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.315][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:57.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:57.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.318][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:57.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:57.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.327][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.330][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.333][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.336][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.338][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.341][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.344][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.352][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167514507, methyl 4,7-difluoro-1-oxo-indane-2-carboxylate, 4,7-difluoro-3-oxo-1,2-dihydroindene-2-carboxylic acid methyl ester, methyl 4,7-difluoro-3-oxo-1,2-dihydroindene-2-carboxylate, methyl 4,7-bis(fluoranyl)-3-oxidanylidene-1,2-dihydroindene-2-carboxylate, ...].
biodb.DEBUG[2023-04-15 08:08:57.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:57.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:57.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:57.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:57.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:57.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:57.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:57.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:57.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:57.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:57.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:57.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.403][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:57.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:57.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.406][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:57.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:57.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:57.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:57.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:57.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:57.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.420][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:57.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:57.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.423][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:57.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:57.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:57.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:57.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.440][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:57.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:57.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.446][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.449][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.452][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.455][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.458][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.461][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:08:57.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:08:57.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.464][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:08:57.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:08:57.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.467][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:57.467][private$selectFields]
biodb.TRACE[2023-04-15 08:08:57.468][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:57.469][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:57.469][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:57.470][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:57.471][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:57.471][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.472][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.473][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.474][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.474][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.475][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.476][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.476][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.477][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.478][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.478][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.479][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.480][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.481][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.481][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.482][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.483][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.483][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.484][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.485][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.486][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.486][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.487][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:57.488][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:57.488][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.489][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.490][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:57.490][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:57.491][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.492][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.492][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.493][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.494][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.495][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.495][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:57.496][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:57.497][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.497][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.498][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.499][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.500][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.500][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.501][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.502][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.502][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.503][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.504][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:57.505][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:57.505][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.506][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.507][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.507][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.508][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.509][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.509][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.510][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.511][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.511][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.512][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.513][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.514][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.514][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.515][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:08:57.516][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:08:57.516][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.517][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.518][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:57.518][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:57.519][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.520][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.521][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.521][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.522][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.523][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.523][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.524][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.525][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.526][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.526][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.527][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.528][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.528][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.529][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.530][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.530][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.531][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.532][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.533][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.533][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.534][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.535][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:57.536][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:57.536][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.537][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.538][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:57.539][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:57.539][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.540][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.541][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.541][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.542][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.543][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.543][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:57.544][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:57.545][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.546][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.546][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.547][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.548][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.549][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.549][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.550][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.551][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.551][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.552][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:57.553][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:57.554][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.554][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.555][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.556][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.556][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.557][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.558][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.559][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.559][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.560][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.561][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.561][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.562][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.563][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.564][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:08:57.564][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:08:57.565][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.566][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.566][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:57.567][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:57.568][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:57.569][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:57.569][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.570][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.571][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.571][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.572][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.573][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.573][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.574][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.575][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.576][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.576][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.577][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.578][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.578][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.579][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.580][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.580][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.581][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.582][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.583][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.583][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.584][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.585][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:57.585][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:57.586][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.587][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.587][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:57.588][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:57.589][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.589][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.590][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.591][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.592][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.592][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.593][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:57.594][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:57.594][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.595][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.596][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.596][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.597][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.598][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.598][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.599][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.600][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.601][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.601][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:57.602][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:57.603][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.603][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.604][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.605][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.611][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.612][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.613][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.614][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.615][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.616][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.617][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.618][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.618][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.619][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.620][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:08:57.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:57.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:57.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:57.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:57.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:57.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:57.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.641][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.650][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.659][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.674][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:57.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:57.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.677][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:57.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:57.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.680][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:57.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:57.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:57.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:57.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:57.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:57.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:57.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:57.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.700][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:57.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:57.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.703][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:57.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:57.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.706][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:57.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:57.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.726][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:57.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:57.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.729][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:57.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:57.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.732][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:57.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:57.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.735][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.744][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.747][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.753][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.756][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.759][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.767][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167491345, 2-(2-fluoro-4,5-dihydroxy-cyclohexyl)ethylphosphonous acid, 2-(2-fluoro-4,5-dihydroxycyclohexyl)ethylphosphonous acid, 2-(2-fluoro-4,5-dihydroxycyclohexyl)ethylphosphonous acid, 2-[2-fluoranyl-4,5-bis(oxidanyl)cyclohexyl]ethylphosphonous acid, ...].
biodb.DEBUG[2023-04-15 08:08:57.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:57.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:57.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:57.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:57.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:57.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:57.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:57.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:57.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:57.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:57.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:57.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.796][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.810][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:57.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:57.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.813][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:57.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:57.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:57.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:57.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:57.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:57.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.833][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:57.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:57.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.837][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:57.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:57.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.852][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:57.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:57.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.855][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:57.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:57.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.866][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.869][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.872][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.875][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:08:57.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:08:57.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.878][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:08:57.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:08:57.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.881][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:57.882][private$selectFields]
biodb.TRACE[2023-04-15 08:08:57.882][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:57.883][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:57.884][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:57.884][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:57.885][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:57.886][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.887][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.887][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.888][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.889][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.890][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.890][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.891][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.892][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.892][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.893][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.894][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.895][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.895][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.896][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.897][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.897][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.898][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.899][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.900][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.900][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.901][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.902][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:57.902][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:57.903][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.904][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.904][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:57.905][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:57.906][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.907][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.907][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.908][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.909][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.909][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.910][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:57.911][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:57.912][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.912][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.913][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.914][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.914][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.915][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.916][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.916][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.917][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.918][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.919][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:57.919][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:57.920][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.921][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.921][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.922][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.923][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.924][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.924][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.925][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.926][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.926][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.927][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.928][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.929][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.929][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.930][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:08:57.931][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:08:57.931][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.932][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.933][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:57.934][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:57.934][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.935][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.936][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.937][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.937][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.938][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.939][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.940][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.940][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.941][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.942][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.942][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.943][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.944][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.944][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.945][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.946][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.947][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.947][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.948][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.949][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.949][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.950][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:57.951][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:57.951][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.952][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.953][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:57.954][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:57.954][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.955][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.956][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.956][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:57.957][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.958][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.958][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:57.959][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:57.960][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.961][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.961][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.962][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:57.963][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.963][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.964][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.965][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:57.965][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.966][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.967][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:57.968][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:57.968][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.969][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.970][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.970][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:57.971][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.972][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.972][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.973][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:57.974][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.974][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.975][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.976][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:57.977][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.977][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.978][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:08:57.979][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:08:57.979][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.980][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.981][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:57.982][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:57.982][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:57.983][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:57.984][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.984][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.985][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.986][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:57.987][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.987][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.988][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.989][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:57.989][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.990][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.991][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.992][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:57.992][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.993][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.994][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.994][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:57.995][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.996][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.996][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.997][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:57.998][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:57.998][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:57.999][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:58.000][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:58.001][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.001][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.002][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:58.003][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:58.003][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.004][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.005][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.005][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.006][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.007][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.007][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:58.008][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:58.009][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.010][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.010][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.011][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.012][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.012][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.013][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.014][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.014][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.015][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.016][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:58.017][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:58.017][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.018][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.019][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.019][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.020][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.021][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.021][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.022][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.023][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.024][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.024][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.025][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.026][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.026][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.027][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:08:58.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:58.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:58.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:58.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:58.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:58.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:58.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.055][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.059][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.088][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:58.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:58.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.091][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:58.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:58.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.094][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:58.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:58.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:58.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:58.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:58.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:58.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:58.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:58.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.111][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.114][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:58.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:58.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.117][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:58.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:58.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.120][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:58.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:58.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.141][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:58.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:58.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.144][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:58.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:58.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.147][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:58.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:58.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.150][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.153][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.159][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.161][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.164][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.167][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.170][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.173][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.181][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167438444, oxiran-2-ylmethyl 3,4,5-trihydroxybenzoate, 3,4,5-trihydroxybenzoic acid 2-oxiranylmethyl ester, oxiran-2-ylmethyl 3,4,5-trihydroxybenzoate, oxiran-2-ylmethyl 3,4,5-tris(oxidanyl)benzoate, ...].
biodb.DEBUG[2023-04-15 08:08:58.182][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:58.183][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-04-15 08:08:58.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.195][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:08:58.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:58.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:58.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:58.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:58.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:58.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:58.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:58.243][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:58.245][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:58.246][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2023-04-15 08:08:58.247][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:58.248][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2023-04-15 08:08:58.249][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:58.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:58.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:58.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:58.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:58.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:58.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:58.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:58.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:58.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:58.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:58.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:58.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.301][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:58.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:58.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.304][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:58.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:58.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:58.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:58.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:58.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:58.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.318][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:58.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:58.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.321][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:58.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:58.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.336][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:58.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:58.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.339][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:58.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:58.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.342][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.347][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.350][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.353][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.356][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.359][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:58.360][private$selectFields]
biodb.TRACE[2023-04-15 08:08:58.360][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:58.361][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:58.362][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:58.362][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:58.363][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:58.364][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.364][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.365][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.366][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.367][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.367][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.368][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.369][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.369][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.370][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.371][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.372][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.372][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.373][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.374][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.374][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.375][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.376][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.377][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.377][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.378][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.379][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.379][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:58.380][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:58.381][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.381][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.382][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:58.383][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:58.384][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.384][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.385][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.386][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.386][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.387][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.388][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:58.388][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:58.389][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.390][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.390][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.391][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.392][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.393][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.393][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.394][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.395][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.395][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.396][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:58.397][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:58.397][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.398][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.399][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.400][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.400][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.401][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.402][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.402][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.403][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.404][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.404][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.405][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.406][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.407][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.407][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:58.408][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:58.409][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.409][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.410][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.411][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.411][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.412][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.413][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.414][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.414][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.415][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.416][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.416][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.417][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.418][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.418][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.419][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.420][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.421][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.421][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.422][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.423][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.423][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.424][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:58.425][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:58.425][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.426][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.427][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:58.428][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:58.428][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.429][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.430][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.430][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.431][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.432][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.433][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:58.433][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:58.434][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.435][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.435][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.436][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.437][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.438][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.438][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.439][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.440][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.441][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.441][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:58.442][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:58.443][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.443][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.444][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.445][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.446][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.446][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.447][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.448][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.448][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.449][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.450][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.450][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.451][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.452][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.452][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:58.453][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:58.454][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:58.455][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:58.455][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.456][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.457][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.457][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.458][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.459][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.460][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.460][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.461][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.462][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.462][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.463][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.464][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.464][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.465][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.466][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.466][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.467][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.468][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.469][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.469][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.470][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.471][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:58.471][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:58.472][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.473][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.473][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:58.474][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:58.475][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.476][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.476][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.477][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.478][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.478][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.479][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:58.480][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:58.480][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.481][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.482][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.488][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.489][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.490][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.491][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.492][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.493][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.494][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.495][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:58.495][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:58.496][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.497][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.498][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.498][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.499][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.500][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.500][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.501][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.502][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.502][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.503][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.504][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.505][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.505][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.506][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:08:58.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:58.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:58.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:58.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:58.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:58.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:58.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.555][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.561][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:58.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:58.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.563][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:58.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:58.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.566][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:58.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:58.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:58.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:58.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:58.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:58.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:58.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:58.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.587][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:58.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:58.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.590][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:58.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:58.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.592][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:58.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:58.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:58.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:58.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.616][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:58.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:58.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:58.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:58.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.627][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.630][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.633][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.639][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.654][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167523845, 2-methyl-2-propylsulfanyl-hexanoic acid, 2-methyl-2-(propylthio)hexanoic acid, 2-methyl-2-propylsulfanylhexanoic acid, 2-methyl-2-propylsulfanyl-hexanoic acid, ...].
biodb.DEBUG[2023-04-15 08:08:58.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:58.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:58.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:58.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:58.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:58.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:58.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:58.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:58.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:58.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:58.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:58.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.677][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.697][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:58.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:58.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.699][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:58.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:58.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:58.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:58.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:58.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:58.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.721][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:58.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:58.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.724][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:58.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:58.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.739][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:58.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:58.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.741][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:58.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:58.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.753][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.756][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.759][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.762][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:58.763][private$selectFields]
biodb.TRACE[2023-04-15 08:08:58.763][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:58.764][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:58.765][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:58.766][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:58.766][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:58.767][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.768][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.769][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.769][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.770][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.771][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.771][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.772][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.773][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.774][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.774][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.775][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.776][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.776][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.777][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.778][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.779][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.779][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.780][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.781][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.781][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.782][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.783][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:58.783][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:58.784][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.785][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.786][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:58.786][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:58.787][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.788][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.788][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.789][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.790][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.790][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.791][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:58.792][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:58.793][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.793][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.794][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.795][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.795][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.796][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.797][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.798][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.798][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.799][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.800][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:58.800][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:58.801][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.802][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.802][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.803][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.804][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.805][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.805][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.806][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.807][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.807][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.808][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.809][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.810][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.810][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.811][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:58.812][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:58.812][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.813][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.814][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.814][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.815][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.816][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.817][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.817][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.818][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.819][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.819][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.820][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.821][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.821][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.822][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.823][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.824][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.824][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.825][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.826][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.826][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.827][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.828][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:58.828][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:58.829][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.830][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.831][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:58.831][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:58.832][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.833][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.834][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.834][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.835][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.836][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.836][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:58.837][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:58.838][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.838][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.839][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.840][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.841][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.841][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.842][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.843][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.844][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.844][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.845][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:58.846][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:58.846][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.847][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.848][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.849][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.849][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.850][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.851][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.852][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.852][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.853][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.854][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.854][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.855][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.856][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.856][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:58.857][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:58.858][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:58.859][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:58.859][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.860][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.861][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.861][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.862][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.863][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.863][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.864][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.865][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.866][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.866][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.867][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.868][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.868][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.869][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.870][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.870][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.871][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.872][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.873][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.873][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.874][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.875][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:58.875][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:58.876][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.877][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.877][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:58.878][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:58.879][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.879][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.880][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.881][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.882][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.882][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.883][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:58.884][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:58.884][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.885][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.886][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.886][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:58.887][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.888][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.888][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.889][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:58.890][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.891][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.891][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:58.892][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:58.893][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.893][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.894][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.895][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:58.895][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.896][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.897][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.898][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:58.898][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.899][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.900][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.900][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:58.901][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.902][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.902][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:08:58.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:58.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:58.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:58.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:58.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:58.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:58.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:58.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:58.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:58.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:58.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:58.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.964][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:58.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:58.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.966][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:58.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:58.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.969][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:58.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:58.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:58.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:58.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:58.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:58.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:58.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:58.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.984][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:58.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.990][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:58.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:58.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.993][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:58.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:58.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.996][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:58.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:58.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:58.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:58.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:59.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:59.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:59.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:59.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.022][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:59.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:59.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.025][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.028][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.034][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.039][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.043][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.046][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.049][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.057][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167523844, 2-methyl-2-propylsulfonio-hexanoate, 2-methyl-2-propylsulfoniohexanoate, 2-methyl-2-propylsulfoniohexanoate, 2-methyl-2-propylsulfonio-hexanoate, ...].
biodb.DEBUG[2023-04-15 08:08:59.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:59.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:59.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:59.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:59.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:59.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:59.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:59.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:59.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:59.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:59.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:59.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.086][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.105][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:59.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:59.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.108][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:59.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:59.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:59.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:59.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:59.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:59.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.124][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:59.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:59.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.127][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:59.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:59.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.144][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:59.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:59.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.147][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:59.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:59.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.168][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.180][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.183][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.186][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.189][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.192][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:59.193][private$selectFields]
biodb.TRACE[2023-04-15 08:08:59.194][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:59.194][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:59.195][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:59.196][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:59.197][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:59.198][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.198][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.199][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.200][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.201][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.201][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.202][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.203][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.204][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.204][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.205][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.206][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.207][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.208][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.208][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.209][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.210][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.211][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.211][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.212][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.213][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.214][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.214][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:59.215][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:59.216][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.217][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.217][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:59.218][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:59.219][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.220][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.220][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.221][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.222][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.223][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.223][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:59.224][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:59.225][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.226][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.227][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.228][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.228][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.229][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.230][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.231][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.232][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.232][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.233][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:59.234][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:59.235][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.235][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.236][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.237][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.238][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.238][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.239][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.240][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.241][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.242][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.242][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.243][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.244][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.245][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.245][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:59.246][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:59.247][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.248][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.248][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.249][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.250][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.251][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.251][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.252][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.253][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.254][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.254][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.255][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.256][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.257][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.257][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.258][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.259][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.260][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.260][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.261][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.262][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.263][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.263][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:59.264][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:59.265][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.266][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.266][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:59.267][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:59.268][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.268][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.269][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.270][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.271][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.271][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.272][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:59.273][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:59.274][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.274][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.275][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.276][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.277][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.277][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.278][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.279][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.280][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.280][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.281][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:59.282][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:59.283][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.283][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.284][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.285][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.286][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.286][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.287][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.288][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.289][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.289][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.290][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.291][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.292][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.292][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.293][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:59.294][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:59.295][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:59.295][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:59.296][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.297][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.298][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.298][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.299][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.300][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.300][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.301][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.302][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.303][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.303][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.304][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.305][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.306][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.306][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.307][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.308][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.309][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.309][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.310][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.311][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.312][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.312][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:59.313][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:59.314][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.315][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.315][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:59.316][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:59.317][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.317][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.318][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.319][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.320][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.320][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.321][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:59.322][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:59.323][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.323][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.324][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.325][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.326][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.326][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.327][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.328][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.329][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.329][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.330][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:59.331][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:59.332][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.332][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.333][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.334][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.335][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.335][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.336][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.337][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.338][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.338][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.339][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.340][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.341][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.341][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.342][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:08:59.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:59.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:59.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:59.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:59.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:59.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:59.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.361][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.403][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:59.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:59.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.407][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:59.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:59.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.410][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:59.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:59.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:59.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:59.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:59.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:59.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:59.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:59.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.431][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:59.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:59.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.434][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:59.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:59.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.437][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:59.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:59.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.458][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:59.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:59.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.461][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:59.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:59.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.464][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:59.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:59.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.470][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.473][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.476][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.478][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.481][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.487][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.490][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.499][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167523841, 2-butylsulfanyl-2,3-dimethyl-butanoic acid, 2-(butylthio)-2,3-dimethylbutanoic acid, 2-butylsulfanyl-2,3-dimethylbutanoic acid, 2-butylsulfanyl-2,3-dimethyl-butanoic acid, ...].
biodb.DEBUG[2023-04-15 08:08:59.500][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:08:59.500][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:08:59.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:59.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:59.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:59.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:59.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:59.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:59.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:08:59.534][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:08:59.537][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:08:59.538][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2023-04-15 08:08:59.539][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:08:59.540][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2023-04-15 08:08:59.541][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:08:59.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:59.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:59.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:59.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:59.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:59.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:59.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:59.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:59.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:59.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:59.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:59.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.566][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.569][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.583][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.586][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:59.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:59.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.589][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:59.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:59.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:59.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:59.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.594][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:59.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:59.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.603][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:59.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:59.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.606][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:59.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:59.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.627][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:59.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:59.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:59.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:59.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.633][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.639][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.648][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.651][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:59.652][private$selectFields]
biodb.TRACE[2023-04-15 08:08:59.653][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:08:59.653][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:08:59.654][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:59.655][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:59.656][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:59.656][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.657][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.658][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.659][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.659][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.660][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.661][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.661][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.662][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.663][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.663][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.664][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.665][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.666][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.666][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.667][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.668][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.668][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.669][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.670][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.671][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.671][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.672][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:59.673][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:59.674][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.674][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.675][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:59.676][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:59.676][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.677][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.678][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.679][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.679][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.680][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.681][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:59.681][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:59.682][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.683][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.684][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.684][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.685][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.686][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.686][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.687][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.688][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.689][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.689][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:59.690][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:59.691][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.691][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.692][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.693][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.694][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.694][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.695][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.696][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.696][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.697][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.698][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.699][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.699][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.700][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.701][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:59.701][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:59.702][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.703][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.703][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.704][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.705][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.706][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.706][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.707][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.708][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.708][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.709][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.710][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.710][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.711][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.712][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.713][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.713][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.714][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.715][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.715][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.716][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.717][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.718][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:59.718][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:59.719][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.720][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.720][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:59.721][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:59.722][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.723][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.723][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.724][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.725][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.725][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.726][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:59.727][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:59.727][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.728][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.729][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.730][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.730][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.731][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.732][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.732][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.733][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.734][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.734][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:59.735][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:59.736][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.737][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.737][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.738][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.739][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.739][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.740][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.741][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.742][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.742][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.743][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.744][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.745][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.745][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.746][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:59.747][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:08:59.748][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:59.748][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:59.749][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.750][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.751][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.751][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.752][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.753][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.753][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.754][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.755][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.756][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.756][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.757][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.758][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.758][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.759][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.760][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.761][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.761][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.762][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.763][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.763][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.764][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.765][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:59.766][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:59.766][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.767][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.768][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:59.768][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:59.769][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.770][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.770][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.771][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.772][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.773][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.773][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:59.774][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:59.775][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.775][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.776][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.777][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.778][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.778][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.779][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.780][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.780][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.781][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.782][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:59.783][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:59.783][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.784][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.785][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.785][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.786][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.787][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.787][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.788][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.789][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.790][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.790][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.791][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.792][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.792][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.793][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:08:59.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:59.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:59.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:59.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:59.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:59.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:59.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.808][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.854][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:59.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:59.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.857][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:59.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:59.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.860][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:59.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:59.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.863][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:59.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:59.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.866][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:59.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:59.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:59.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:59.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:08:59.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.881][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:59.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:59.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.884][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:59.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:59.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.887][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:08:59.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:08:59.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:08:59.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:08:59.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.907][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:59.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:59.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.910][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:59.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:59.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.913][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:08:59.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:08:59.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.916][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:08:59.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.925][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.928][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.931][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:08:59.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.934][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.937][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.940][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:08:59.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.948][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167527736, 1-[4-(ethoxymethoxy)phenyl]-2-sulfanyl-ethanone, 1-[4-(ethoxymethoxy)phenyl]-2-mercaptoethanone, 1-[4-(ethoxymethoxy)phenyl]-2-sulfanylethanone, 1-[4-(ethoxymethoxy)phenyl]-2-sulfanyl-ethanone, ...].
biodb.DEBUG[2023-04-15 08:08:59.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:08:59.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:08:59.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:08:59.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:08:59.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:08:59.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:08:59.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:08:59.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:59.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:59.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:08:59.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:08:59.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:08:59.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:08:59.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:08:59.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:08:59.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:08:59.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.992][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:59.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:59.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.995][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:08:59.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:08:59.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:08:59.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:08:59.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:08:59.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:08:59.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:00.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:00.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.009][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:00.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:00.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.012][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:00.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:00.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.026][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:00.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:00.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.029][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:00.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:00.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.040][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.043][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.046][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.049][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:00.050][private$selectFields]
biodb.TRACE[2023-04-15 08:09:00.051][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:09:00.051][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:09:00.052][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:00.053][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:00.054][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:00.054][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.055][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.062][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.063][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.064][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.064][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.065][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.066][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.067][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.068][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.069][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.070][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.070][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.071][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.072][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.073][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.073][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.074][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.075][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.075][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.076][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.077][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.078][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:00.078][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:00.079][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.080][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.080][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:00.081][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:00.082][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.082][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.083][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.084][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.085][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.085][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.086][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:00.087][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:00.087][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.088][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.089][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.090][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.090][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.091][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.092][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.093][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.093][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.094][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.095][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:00.095][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:00.096][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.097][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.097][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.098][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.099][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.099][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.100][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.101][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.102][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.102][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.103][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.104][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.104][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.105][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.106][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:00.107][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:00.107][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.108][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.109][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.110][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.110][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.111][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.112][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.112][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.113][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.114][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.115][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.115][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.116][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.117][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.117][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.118][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.119][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.120][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.120][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.121][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.122][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.122][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.123][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:00.124][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:00.125][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.125][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.126][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:00.127][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:00.128][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.128][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.129][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.130][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.130][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.131][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.132][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:00.133][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:00.133][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.134][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.135][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.135][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.136][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.137][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.137][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.138][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.139][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.139][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.140][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:00.141][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:00.142][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.142][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.143][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.144][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.145][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.145][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.146][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.147][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.147][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.148][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.149][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.150][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.150][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.151][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.152][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2023-04-15 08:09:00.153][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2023-04-15 08:09:00.153][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:00.154][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:00.155][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.156][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.156][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.157][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.158][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.159][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.159][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.160][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.161][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.161][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.162][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.163][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.164][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.164][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.165][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.166][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.166][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.167][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.168][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.169][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.169][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.170][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.171][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:00.171][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:00.172][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.173][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.173][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:00.174][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:00.175][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.176][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.176][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.177][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.178][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.178][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.179][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.180][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.180][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.181][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.182][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.183][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.183][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.184][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.185][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:00.185][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:00.186][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.187][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.187][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.188][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.189][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.190][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.190][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.191][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.192][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.192][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.193][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.194][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.194][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.195][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.196][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:09:00.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:00.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:00.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:00.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:00.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:00.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:00.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.249][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:00.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:00.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.252][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:00.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:00.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.255][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:00.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:00.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:00.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:00.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:00.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:00.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:00.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:00.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.301][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:00.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:00.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.303][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:00.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:00.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:00.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:00.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.309][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.315][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.318][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.321][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.324][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.327][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.330][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.333][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.341][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167513889, (1R)-1-deuterio-1-[3-(difluoromethyl)-2-fluoro-phenyl]ethanamine;hydrochloride, (1R)-1-deuterio-1-[3-(difluoromethyl)-2-fluorophenyl]ethanamine;hydrochloride, (1R)-1-deuterio-1-[3-(difluoromethyl)-2-fluorophenyl]ethanamine;hydrochloride, (1R)-1-[3-[bis(fluoranyl)methyl]-2-fluoranyl-phenyl]-1-deuterio-ethanamine;hydrochloride, ...].
biodb.DEBUG[2023-04-15 08:09:00.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:09:00.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:00.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:00.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:00.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:00.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:00.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:09:00.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:00.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:00.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:00.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:00.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.386][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:00.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:00.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.389][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:00.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:00.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:00.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:00.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:00.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:00.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.404][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:00.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:00.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.407][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:00.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:00.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.422][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:00.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:00.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.425][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:00.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:00.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.430][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.433][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.436][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.439][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.442][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.445][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:00.445][private$selectFields]
biodb.TRACE[2023-04-15 08:09:00.446][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:09:00.447][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:09:00.447][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:00.448][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:00.449][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:00.450][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.450][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.451][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.452][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.453][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.453][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.454][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.455][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.456][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.456][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.457][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.458][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.458][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.459][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.460][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.461][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.461][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.462][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.463][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.463][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.464][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.465][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.465][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:00.466][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:00.467][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.468][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.468][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:00.469][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:00.470][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.470][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.471][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.472][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.473][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.473][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.474][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:00.475][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:00.475][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.476][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.477][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.478][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.478][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.479][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.480][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.480][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.481][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.482][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.482][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:00.483][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:00.484][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.485][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.485][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.486][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.487][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.487][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.488][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.489][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.490][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.490][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.491][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.492][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.492][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.493][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.494][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:00.494][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:00.501][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.502][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.503][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.504][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.505][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.506][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.507][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.508][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.509][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.509][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.510][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.511][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.511][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.512][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.513][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.513][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.514][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.515][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.516][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.516][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.517][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.518][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.518][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:00.519][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:00.520][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.521][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.521][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:00.522][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:00.523][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.523][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.524][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.525][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.526][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.526][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.527][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:00.528][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:00.528][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.529][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.530][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.531][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.531][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.532][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.533][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.533][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.534][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.535][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.535][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:00.536][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:00.537][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.538][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.538][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.539][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.540][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.540][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.541][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.542][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.543][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.543][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.544][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.545][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.546][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.546][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.547][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:00.548][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:00.549][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:00.549][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:00.550][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.551][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.552][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.552][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.553][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.554][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.555][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.556][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.556][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.557][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.558][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.558][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.559][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.560][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.561][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.561][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.562][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.563][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.564][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.564][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.565][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.566][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.566][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:00.567][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:00.568][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.569][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.569][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:00.570][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:00.571][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.571][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.572][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.573][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.574][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.574][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.575][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:00.576][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:00.576][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.577][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.578][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.578][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.579][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.580][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.581][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.581][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.582][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.583][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.583][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:00.584][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:00.585][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.585][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.586][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.587][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.588][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.588][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.589][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.590][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.590][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.591][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.592][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.593][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.593][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.594][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.595][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:09:00.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:00.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:00.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:00.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:00.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:00.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:00.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.648][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:00.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:00.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.651][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:00.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:00.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.654][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:00.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:00.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:00.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:00.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:00.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:00.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:00.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:00.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.674][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:00.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:00.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.677][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:00.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:00.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.680][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:00.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:00.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.700][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:00.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:00.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.703][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:00.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:00.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:00.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:00.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.709][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.724][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.727][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.730][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.733][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.736][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.739][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.747][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167510581, 9-hydroxy-9H-fluorene-3-carboxylic acid, 9-hydroxy-9H-fluorene-3-carboxylic acid, 9-hydroxy-9H-fluorene-3-carboxylic acid, 9-oxidanyl-9H-fluorene-3-carboxylic acid, ...].
biodb.DEBUG[2023-04-15 08:09:00.748][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:09:00.749][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:09:00.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:09:00.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:00.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:00.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:00.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:00.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:00.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:00.785][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:09:00.787][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:09:00.788][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2023-04-15 08:09:00.789][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:09:00.790][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2023-04-15 08:09:00.791][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:09:00.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:09:00.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:00.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:00.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:00.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:00.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:00.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:09:00.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:00.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:00.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:00.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:00.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.835][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:00.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:00.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.838][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:00.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:00.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:00.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:00.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:00.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:00.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.852][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:00.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:00.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.855][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:00.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:00.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:00.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:00.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.870][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:00.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:00.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:00.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:00.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.875][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:00.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.881][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.884][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:00.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.887][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.890][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:00.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.892][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:09:00.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:09:00.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.895][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:09:00.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:09:00.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.898][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:00.899][private$selectFields]
biodb.TRACE[2023-04-15 08:09:00.899][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:09:00.900][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:09:00.901][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:00.902][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:00.902][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:00.903][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.904][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.904][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.905][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:00.906][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.906][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.907][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.908][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:00.909][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.909][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.910][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.911][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:00.911][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.912][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.913][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.913][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:00.914][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.915][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.915][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.916][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:00.917][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.918][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.918][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:00.919][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:00.920][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.920][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.921][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:00.922][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:00.922][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.923][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.924][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.925][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:00.925][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:00.926][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:00.927][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:00.927][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:00.928][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.091][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.093][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.093][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.094][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.095][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.095][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.096][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.097][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.097][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.098][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:01.099][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:01.099][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.100][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.101][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.101][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.102][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.103][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.103][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.104][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.105][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.105][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.106][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.107][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.108][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.108][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.109][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:09:01.110][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:09:01.110][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.111][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.112][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:01.112][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:01.113][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.114][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.114][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.115][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.116][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.116][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.117][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.118][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.118][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.119][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.120][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.120][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.121][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.122][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.122][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.123][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.124][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.124][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.125][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.126][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.126][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.127][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.128][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:01.128][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:01.129][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.130][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.130][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:01.131][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:01.132][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.132][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.133][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.134][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.134][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.135][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.136][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:01.137][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:01.137][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.138][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.138][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.139][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.140][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.140][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.141][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.142][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.142][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.143][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.144][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:01.144][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:01.145][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.146][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.146][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.147][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.148][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.149][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.149][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.150][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.151][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.151][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.152][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.153][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.153][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.154][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.155][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:09:01.156][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:09:01.156][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.157][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.158][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:01.159][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:01.159][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:01.160][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:01.161][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.161][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.162][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.163][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.164][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.164][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.165][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.166][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.166][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.167][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.168][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.168][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.169][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.170][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.170][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.171][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.172][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.172][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.173][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.174][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.174][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.175][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.176][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:01.176][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:01.177][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.178][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.178][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:01.179][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:01.180][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.180][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.181][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.182][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.182][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.183][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.184][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:01.185][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:01.185][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.186][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.187][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.187][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.188][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.189][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.190][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.190][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.191][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.192][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.192][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:01.193][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:01.194][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.194][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.195][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.196][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.197][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.197][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.198][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.199][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.199][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.200][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.201][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.201][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.202][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.203][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.203][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:09:01.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:01.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:01.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:01.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:01.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:01.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:01.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.221][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.256][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:01.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:01.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.258][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:01.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:01.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.261][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:01.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:01.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:01.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:01.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:01.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:01.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:01.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:01.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.276][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.281][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:01.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:01.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.284][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:01.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:01.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.287][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:01.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:01.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.307][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:01.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:01.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.313][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:01.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:01.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.316][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:01.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:01.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.327][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.330][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.332][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.335][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.338][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.341][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.349][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167523845, 2-methyl-2-propylsulfanyl-hexanoic acid, 2-methyl-2-(propylthio)hexanoic acid, 2-methyl-2-propylsulfanylhexanoic acid, 2-methyl-2-propylsulfanyl-hexanoic acid, ...].
biodb.DEBUG[2023-04-15 08:09:01.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:09:01.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:01.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:01.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:01.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:01.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:01.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:09:01.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:01.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:01.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:01.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:01.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.391][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:01.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:01.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.394][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:01.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:01.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:01.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:01.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:01.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:01.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.407][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:01.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:01.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.410][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:01.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:01.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.424][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:01.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:01.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.427][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:01.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:01.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.430][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.435][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.438][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.441][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.443][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.446][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:09:01.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:09:01.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.449][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:09:01.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:09:01.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.452][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:01.453][private$selectFields]
biodb.TRACE[2023-04-15 08:09:01.453][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:09:01.454][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:09:01.455][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:01.455][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:01.456][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:01.457][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.458][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.458][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.459][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.460][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.461][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.461][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.462][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.463][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.463][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.464][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.465][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.466][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.466][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.467][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.468][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.469][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.469][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.470][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.471][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.471][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.472][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.473][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:01.473][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:01.474][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.475][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.475][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:01.476][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:01.477][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.478][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.478][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.479][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.480][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.480][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.481][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:01.482][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:01.482][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.483][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.484][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.484][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.485][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.486][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.486][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.487][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.488][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.488][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.489][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:01.490][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:01.491][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.491][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.492][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.493][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.493][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.494][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.495][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.495][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.496][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.497][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.497][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.498][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.499][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.499][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.500][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:09:01.501][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:09:01.501][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.502][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.503][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:01.503][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:01.504][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.505][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.505][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.506][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.507][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.508][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.508][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.509][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.510][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.510][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.511][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.512][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.512][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.513][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.514][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.514][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.515][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.516][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.516][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.517][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.518][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.518][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.519][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:01.520][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:01.521][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.521][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.522][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:01.523][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:01.523][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.528][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.528][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.529][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.530][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.530][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.531][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:01.532][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:01.532][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.533][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.534][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.534][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.535][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.536][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.536][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.537][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.538][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.538][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.539][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:01.540][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:01.540][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.541][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.542][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.542][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.543][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.544][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.544][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.545][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.546][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.546][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.547][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.548][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.548][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.549][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.550][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:09:01.550][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:09:01.551][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.552][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.553][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:01.553][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:01.554][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:01.555][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:01.555][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.556][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.557][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.558][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.558][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.559][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.560][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.560][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.561][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.562][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.562][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.563][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.564][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.564][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.565][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.566][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.566][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.567][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.568][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.569][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.569][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.570][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.570][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:01.571][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:01.572][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.572][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.573][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:01.574][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:01.575][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.575][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.576][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.577][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.577][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.578][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.579][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:01.579][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:01.580][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.581][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.581][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.582][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.582][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.583][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.584][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.585][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.585][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.586][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.586][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:01.587][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:01.588][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.589][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.589][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.590][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.591][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.591][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.592][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.593][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.593][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.594][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.595][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.595][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.596][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.597][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.597][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:09:01.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:01.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:01.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:01.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:01.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:01.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:01.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.634][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.637][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.646][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.649][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:01.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:01.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.652][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:01.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:01.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.654][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:01.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:01.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:01.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:01.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:01.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:01.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:01.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:01.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.675][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:01.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:01.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.678][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:01.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:01.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.680][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:01.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:01.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.700][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:01.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:01.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.703][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:01.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:01.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:01.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:01.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.709][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.717][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.720][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.723][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.725][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.728][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.731][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.739][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167523844, 2-methyl-2-propylsulfonio-hexanoate, 2-methyl-2-propylsulfoniohexanoate, 2-methyl-2-propylsulfoniohexanoate, 2-methyl-2-propylsulfonio-hexanoate, ...].
biodb.DEBUG[2023-04-15 08:09:01.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:09:01.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:01.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:01.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:01.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:01.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:01.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:09:01.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:01.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:01.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:01.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:01.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.766][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.779][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.785][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:01.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:01.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.787][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:01.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:01.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:01.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:01.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:01.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:01.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.801][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:01.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:01.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.804][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:01.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:01.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.818][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:01.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:01.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.820][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:01.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:01.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.826][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.828][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.831][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.834][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.837][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.840][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:09:01.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:09:01.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.842][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:09:01.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:09:01.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.845][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:01.846][private$selectFields]
biodb.TRACE[2023-04-15 08:09:01.846][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:09:01.847][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:09:01.848][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:01.849][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:01.849][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:01.850][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.851][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.852][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.852][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.853][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.854][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.854][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.855][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.856][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.857][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.857][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.858][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.859][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.859][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.860][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.861][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.862][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.862][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.863][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.864][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.864][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.865][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.866][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:01.867][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:01.867][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.868][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.869][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:01.869][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:01.870][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.871][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.871][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.872][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.873][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.873][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.874][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:01.875][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:01.876][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.876][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.877][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.878][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.878][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.879][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.880][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.881][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.881][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.882][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.883][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:01.883][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:01.884][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.885][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.885][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.886][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.887][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.887][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.888][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.889][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.889][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.890][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.891][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.891][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.892][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.893][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.893][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:09:01.894][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:09:01.895][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.895][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.896][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:01.897][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:01.898][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.898][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.899][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.900][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.900][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.901][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.902][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.902][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.903][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.904][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.904][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.905][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.906][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.906][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.907][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.908][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.908][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.909][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.910][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.911][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.911][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.912][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.913][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:01.913][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:01.914][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.915][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.915][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:01.916][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:01.917][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.917][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.918][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.919][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.919][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.920][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.921][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:01.922][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:01.922][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.923][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.924][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.924][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.925][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.926][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.926][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.927][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.928][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.928][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.929][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:01.930][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:01.930][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.931][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.932][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.932][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.933][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.934][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.934][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.935][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.936][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.937][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.937][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.938][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.939][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.939][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.940][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:09:01.941][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:09:01.941][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.942][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.943][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:01.943][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:01.944][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:01.945][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:01.945][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.946][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.947][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.948][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:01.948][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.949][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.950][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.950][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:01.951][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.952][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.952][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.953][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:01.954][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.954][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.955][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.956][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:01.957][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.961][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.962][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.963][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:01.963][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.964][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.965][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:01.965][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:01.966][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.967][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.967][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:01.968][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:01.969][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.969][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.970][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.971][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:01.971][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.972][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.973][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:01.973][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:01.974][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.975][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.975][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.976][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:01.977][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.977][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.978][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.979][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:01.979][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.980][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.981][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:01.982][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:01.982][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.983][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.983][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.984][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:01.985][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.985][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.986][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.987][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:01.987][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.988][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.989][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.989][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:01.990][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.991][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.992][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:09:01.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:01.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:01.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:01.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:01.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:01.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:01.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:01.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:01.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.028][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.042][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:02.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:02.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.045][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:02.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:02.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.047][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:02.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:02.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:02.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:02.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:02.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:02.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:02.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:02.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.068][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:02.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:02.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.071][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:02.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:02.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.074][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:02.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:02.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.094][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:02.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:02.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.097][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:02.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:02.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.099][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:02.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:02.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.105][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.111][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.117][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.119][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.122][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.125][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.133][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167523841, 2-butylsulfanyl-2,3-dimethyl-butanoic acid, 2-(butylthio)-2,3-dimethylbutanoic acid, 2-butylsulfanyl-2,3-dimethylbutanoic acid, 2-butylsulfanyl-2,3-dimethyl-butanoic acid, ...].
biodb.DEBUG[2023-04-15 08:09:02.134][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:09:02.135][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:09:02.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:09:02.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:02.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:02.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:02.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:02.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:02.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:02.168][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:09:02.170][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:09:02.171][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2023-04-15 08:09:02.172][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:09:02.173][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2023-04-15 08:09:02.175][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:09:02.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:09:02.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:02.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:02.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:02.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:02.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:02.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:09:02.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:02.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:02.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:02.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:02.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.220][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:02.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:02.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.223][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:02.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:02.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:02.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:02.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:02.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:02.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.236][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:02.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:02.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.239][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:02.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:02.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:02.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:02.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.256][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:02.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:02.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.258][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.261][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.264][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.267][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.270][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.273][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.275][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:09:02.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:09:02.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.278][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:09:02.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:09:02.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.281][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:02.282][private$selectFields]
biodb.TRACE[2023-04-15 08:09:02.282][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:09:02.283][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:09:02.284][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:02.285][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:02.285][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:02.286][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.287][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.287][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.288][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.289][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.289][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.290][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.291][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.291][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.292][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.293][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.294][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.294][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.295][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.296][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.296][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.297][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.298][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.298][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.299][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.300][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.300][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.301][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:02.302][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:02.303][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.303][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.304][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:02.305][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:02.305][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.306][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.307][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.307][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.308][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.309][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.309][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:02.310][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:02.311][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.311][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.312][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.313][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.313][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.314][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.315][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.316][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.316][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.317][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.317][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:02.318][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:02.319][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.320][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.320][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.321][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.322][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.322][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.323][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.324][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.324][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.325][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.326][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.326][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.327][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.328][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.328][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:09:02.329][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:09:02.330][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.330][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.331][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:02.332][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:02.333][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.333][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.334][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.335][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.335][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.336][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.337][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.337][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.338][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.339][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.339][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.340][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.341][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.341][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.342][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.343][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.344][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.344][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.345][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.346][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.346][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.347][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.348][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:02.348][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:02.349][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.350][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.350][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:02.351][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:02.352][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.352][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.353][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.354][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.355][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.355][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.356][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:02.357][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:02.357][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.358][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.359][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.360][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.360][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.361][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.362][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.363][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.363][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.364][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.365][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:02.365][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:02.366][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.367][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.368][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.368][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.369][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.370][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.370][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.371][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.372][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.372][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.373][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.374][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.374][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.375][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.376][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:09:02.377][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:09:02.377][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.378][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.379][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:02.379][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:02.380][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:02.381][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:02.381][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.382][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.383][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.384][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.384][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.385][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.385][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.386][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.387][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.388][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.388][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.389][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.390][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.390][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.391][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.392][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.396][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.397][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.397][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.398][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.399][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.399][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.400][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:02.401][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:02.401][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.402][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.403][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:02.404][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:02.404][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.405][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.406][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.406][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.407][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.408][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.408][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:02.409][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:02.410][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.410][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.411][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.412][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.412][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.413][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.413][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.414][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.415][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.415][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.416][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:02.417][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:02.417][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.418][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.419][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.420][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.420][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.421][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.421][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.422][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.423][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.423][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.424][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.425][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.425][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.426][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.427][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:09:02.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:02.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:02.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:02.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:02.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:02.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:02.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.479][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:02.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:02.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.481][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:02.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:02.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.484][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:02.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:02.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:02.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:02.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:02.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:02.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:02.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:02.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.499][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.504][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:02.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:02.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.507][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:02.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:02.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.510][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:02.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:02.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.530][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:02.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:02.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:02.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:02.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.536][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:02.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:02.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.544][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.547][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.550][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.553][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.556][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.558][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.570][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167527736, 1-[4-(ethoxymethoxy)phenyl]-2-sulfanyl-ethanone, 1-[4-(ethoxymethoxy)phenyl]-2-mercaptoethanone, 1-[4-(ethoxymethoxy)phenyl]-2-sulfanylethanone, 1-[4-(ethoxymethoxy)phenyl]-2-sulfanyl-ethanone, ...].
biodb.DEBUG[2023-04-15 08:09:02.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:09:02.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:02.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:02.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:02.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:02.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:02.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:09:02.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:02.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:02.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:02.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:02.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.598][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.616][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:02.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:02.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.619][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:02.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:02.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:02.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:02.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:02.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:02.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.632][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:02.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:02.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.635][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:02.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:02.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.648][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:02.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:02.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.651][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:02.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:02.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.657][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.659][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.665][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.668][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.671][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:09:02.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:09:02.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.674][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:09:02.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:09:02.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.676][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:02.677][private$selectFields]
biodb.TRACE[2023-04-15 08:09:02.678][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:09:02.678][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:09:02.679][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:02.680][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:02.680][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:02.681][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.682][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.682][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.683][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.684][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.684][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.685][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.686][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.686][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.687][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.688][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.689][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.689][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.690][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.691][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.691][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.692][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.693][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.693][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.694][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.695][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.695][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.696][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:02.697][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:02.697][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.698][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.699][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:02.699][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:02.700][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.701][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.701][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.702][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.703][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.703][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.704][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:02.705][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:02.706][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.706][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.707][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.708][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.708][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.709][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.710][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.710][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.711][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.712][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.713][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:02.713][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:02.714][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.715][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.715][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.716][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.717][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.717][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.718][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.719][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.720][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.720][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.721][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.722][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.722][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.723][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.724][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:09:02.724][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:09:02.725][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.726][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.726][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:02.727][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:02.728][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.728][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.729][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.730][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.731][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.731][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.732][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.733][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.733][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.734][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.735][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.735][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.736][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.737][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.737][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.738][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.739][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.739][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.740][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.741][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.742][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.742][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.743][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:02.744][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:02.744][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.745][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.746][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:02.746][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:02.747][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.748][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.748][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.749][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.750][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.750][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.751][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:02.752][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:02.752][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.753][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.754][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.754][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.755][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.756][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.756][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.757][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.758][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.759][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.759][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:02.760][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:02.761][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.762][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.762][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.763][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.764][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.764][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.765][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.766][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.767][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.767][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.768][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.769][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.769][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.770][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.771][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:09:02.772][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:09:02.772][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.773][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.774][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2023-04-15 08:09:02.775][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2023-04-15 08:09:02.775][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:02.776][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:02.777][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.777][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.778][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.779][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.779][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.780][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.781][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.782][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.782][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.783][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.784][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.784][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.785][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.786][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.786][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.787][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.788][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.789][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.789][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.790][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.791][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.791][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.792][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:02.793][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:02.794][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.794][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.795][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:02.796][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:02.796][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.797][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.798][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.799][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.799][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.800][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.801][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.801][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.802][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.803][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.803][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.804][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.805][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.805][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.806][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:02.807][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:02.808][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.808][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.809][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.810][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.810][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.811][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.812][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.813][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.813][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.814][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.815][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.815][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.816][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.817][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.817][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:09:02.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:02.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:02.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:02.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:02.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:02.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:02.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.874][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:02.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:02.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.877][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:02.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:02.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.880][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:02.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:02.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.883][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:02.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:02.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:02.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:02.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:02.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:02.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:02.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:02.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:02.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.917][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:02.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:02.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.920][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:02.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:02.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.923][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:02.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:02.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:02.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.935][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.940][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:02.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.943][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.946][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:02.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.957][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167513889, (1R)-1-deuterio-1-[3-(difluoromethyl)-2-fluoro-phenyl]ethanamine;hydrochloride, (1R)-1-deuterio-1-[3-(difluoromethyl)-2-fluorophenyl]ethanamine;hydrochloride, (1R)-1-deuterio-1-[3-(difluoromethyl)-2-fluorophenyl]ethanamine;hydrochloride, (1R)-1-[3-[bis(fluoranyl)methyl]-2-fluoranyl-phenyl]-1-deuterio-ethanamine;hydrochloride, ...].
biodb.DEBUG[2023-04-15 08:09:02.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:09:02.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:02.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:02.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:02.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:02.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:02.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:09:02.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:02.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:02.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:02.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:02.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:02.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:02.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:02.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:02.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:02.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:02.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:02.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.000][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:03.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:03.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.003][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:03.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:03.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:03.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:03.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:03.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:03.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:03.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:03.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:03.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:03.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.018][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:03.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:03.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.021][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:03.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:03.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:03.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:03.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:03.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:03.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:03.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:03.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:03.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:03.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.035][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:03.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:03.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.038][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:03.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:03.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.041][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:03.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:03.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:03.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:03.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.047][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:03.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:03.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.050][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:03.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:03.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.056][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:03.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:03.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.059][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:03.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:03.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.062][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:09:03.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:09:03.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.065][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:09:03.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:09:03.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.068][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:03.068][private$selectFields]
biodb.TRACE[2023-04-15 08:09:03.069][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:09:03.070][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:09:03.070][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:03.071][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:03.072][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:03.073][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.073][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.074][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:03.075][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:03.075][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.076][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.077][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:03.077][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:03.078][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.079][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.079][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:03.080][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:03.081][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.082][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.082][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:03.083][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:03.084][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.084][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.085][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:03.086][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:03.086][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.087][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.088][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:03.089][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:03.089][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.090][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.091][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:03.091][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:03.092][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.093][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.093][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:03.094][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:03.095][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.095][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.096][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:03.097][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:03.097][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.098][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.099][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:03.100][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:03.100][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.101][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.102][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:03.102][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:03.103][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.104][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.104][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:03.105][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:03.106][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.107][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.107][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:03.108][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:03.109][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.109][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.110][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:03.111][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:03.111][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.112][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.113][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:03.114][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:03.114][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.115][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.116][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:09:03.116][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:09:03.117][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.118][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.118][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:03.119][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:03.120][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.120][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.121][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:03.122][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:03.122][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.123][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.124][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:03.125][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:03.125][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.126][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.127][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:03.127][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:03.128][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.129][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.129][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:03.130][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:03.131][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.131][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.132][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:03.133][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:03.134][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.134][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.135][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:03.136][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:03.136][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.137][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.138][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:03.138][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:03.139][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.140][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.140][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:03.141][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:03.142][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.142][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.143][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:03.144][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:03.144][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.145][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.146][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:03.147][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:03.147][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.148][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.149][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:03.149][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:03.150][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.151][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.152][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:03.152][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:03.153][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.154][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.154][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:03.155][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:03.156][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.157][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.157][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:03.158][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:03.159][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.159][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.160][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:03.161][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:03.162][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.162][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.163][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:09:03.164][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:09:03.164][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.165][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.166][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:03.166][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:09:03.167][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:03.168][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:03.169][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.169][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.170][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:03.171][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:03.171][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.172][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.173][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:03.173][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:03.174][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.175][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.175][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:03.176][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:03.177][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.177][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.178][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:03.179][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:03.179][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.180][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.181][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:03.182][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:03.182][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.183][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.184][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:03.184][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:03.185][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.186][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.186][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:03.187][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:03.188][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.188][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.189][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:03.190][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:03.190][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.191][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.192][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:03.193][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:03.193][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.194][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.194][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:03.195][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:03.196][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.197][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.197][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:03.198][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:03.199][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.199][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.200][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:03.201][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:03.201][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.202][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.203][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:03.203][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:03.204][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.205][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.205][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:03.206][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:03.207][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.208][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.208][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:03.209][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:03.210][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.210][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.211][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:09:03.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:03.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:03.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:03.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:03.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:03.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:03.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:03.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:03.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:03.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:03.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:03.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:09:03.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:03.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:03.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:03.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:03.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:03.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:09:03.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:03.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:03.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:03.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:03.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:03.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:09:03.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:03.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:03.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:03.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:03.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:03.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:09:03.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:03.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:03.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:03.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:03.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:03.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:09:03.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.263][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:03.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:03.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.265][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:03.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:03.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.268][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:09:03.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:09:03.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:03.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:03.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:03.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:03.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:09:03.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:09:03.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:03.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:03.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.286][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:03.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:03.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:09:03.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:09:03.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.291][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:03.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:03.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.294][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:03.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:03.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.297][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:09:03.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:09:03.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:03.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:03.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:03.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:03.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:03.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:09:03.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:03.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:03.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:03.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:03.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:03.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:09:03.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.316][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:03.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:03.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.319][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:03.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:03.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.321][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:09:03.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:09:03.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:03.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:03.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.327][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:03.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:03.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.330][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:03.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:03.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.332][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:03.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:03.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.335][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:03.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:03.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.338][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:03.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:09:03.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.341][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:03.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:03.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.344][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:03.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:03.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.346][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:03.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:09:03.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.354][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167510581, 9-hydroxy-9H-fluorene-3-carboxylic acid, 9-hydroxy-9H-fluorene-3-carboxylic acid, 9-hydroxy-9H-fluorene-3-carboxylic acid, 9-oxidanyl-9H-fluorene-3-carboxylic acid, ...].
biodb.DEBUG[2023-04-15 08:09:03.355][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:09:03.356][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-04-15 08:09:03.359][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-04-15 08:09:03.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-04-15 08:09:03.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.362][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-04-15 08:09:03.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-04-15 08:09:03.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-15 08:09:03.365][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-04-15 08:09:03.366][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.comp from the request scheduler
biodb.INFO [2023-04-15 08:09:03.367][self$deleteConn] Connector "ncbi.pubchem.comp" deleted.
biodb.DEBUG[2023-04-15 08:09:03.368][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-04-15 08:09:03.368][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:03.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:03.370][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.371][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-04-15 08:09:03.374][biodb::testContext]
biodb.INFO [2023-04-15 08:09:03.375][biodb::testContext] ********************************************************************************
biodb.INFO [2023-04-15 08:09:03.376][biodb::testContext] Test context - Pubchem Subst long tests
biodb.INFO [2023-04-15 08:09:03.376][biodb::testContext] ********************************************************************************
biodb.INFO [2023-04-15 08:09:03.377][biodb::testContext]
biodb.INFO [2023-04-15 08:09:03.378][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.6.1.
biodb.DEBUG[2023-04-15 08:09:03.379][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.16-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2023-04-15 08:09:03.382][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-15 08:09:03.383][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-04-15 08:09:03.384][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-04-15 08:09:03.384][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.386][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-04-15 08:09:03.387][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-04-15 08:09:03.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.389][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-04-15 08:09:03.390][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-04-15 08:09:03.391][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.393][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-04-15 08:09:03.393][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-04-15 08:09:03.394][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-04-15 08:09:03.395][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.397][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-04-15 08:09:03.397][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-04-15 08:09:03.398][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-04-15 08:09:03.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.401][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-04-15 08:09:03.401][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-04-15 08:09:03.402][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.404][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-04-15 08:09:03.405][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-04-15 08:09:03.405][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-04-15 08:09:03.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.408][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-04-15 08:09:03.409][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-04-15 08:09:03.409][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.411][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-04-15 08:09:03.412][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-04-15 08:09:03.412][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-04-15 08:09:03.413][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.415][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-04-15 08:09:03.416][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-04-15 08:09:03.416][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-04-15 08:09:03.417][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-04-15 08:09:03.418][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-04-15 08:09:03.418][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-04-15 08:09:03.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.421][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-04-15 08:09:03.422][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-04-15 08:09:03.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.424][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-04-15 08:09:03.425][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-04-15 08:09:03.426][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.427][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-04-15 08:09:03.428][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-04-15 08:09:03.429][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.431][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-04-15 08:09:03.431][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-04-15 08:09:03.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.434][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-04-15 08:09:03.435][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-04-15 08:09:03.435][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.437][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-04-15 08:09:03.438][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-04-15 08:09:03.443][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-04-15 08:09:03.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.445][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-04-15 08:09:03.446][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-04-15 08:09:03.447][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-04-15 08:09:03.447][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.449][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-04-15 08:09:03.451][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:09:03.451][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-04-15 08:09:03.452][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.453][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:09:03.454][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.454][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:09:03.455][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:09:03.456][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:09:03.457][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-04-15 08:09:03.457][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:09:03.458][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.459][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-04-15 08:09:03.459][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:09:03.460][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:09:03.461][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.462][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:09:03.462][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-15 08:09:03.462][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-15 08:09:03.462][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-04-15 08:09:03.462][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-04-15 08:09:03.462][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:09:03.463][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:09:03.464][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:09:03.465][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:09:03.465][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:09:03.466][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:09:03.466][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:09:03.467][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:09:03.468][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:09:03.468][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:09:03.469][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:09:03.470][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:09:03.471][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-04-15 08:09:03.472][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:09:03.473][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-04-15 08:09:03.473][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.474][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:09:03.475][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.475][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:09:03.476][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:09:03.477][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:09:03.478][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-04-15 08:09:03.478][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:09:03.479][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.480][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-04-15 08:09:03.480][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:09:03.481][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:09:03.482][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.482][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:09:03.482][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-15 08:09:03.482][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-15 08:09:03.482][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-04-15 08:09:03.482][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-04-15 08:09:03.483][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:09:03.484][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:09:03.485][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:09:03.485][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:09:03.486][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:09:03.486][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:09:03.487][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:09:03.488][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:09:03.492][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:09:03.493][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:09:03.494][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:09:03.494][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:09:03.495][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-04-15 08:09:03.496][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.497][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-04-15 08:09:03.498][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.498][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:09:03.499][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.500][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:09:03.500][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:09:03.501][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:09:03.502][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-04-15 08:09:03.502][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:09:03.503][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:09:03.504][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-04-15 08:09:03.505][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:09:03.505][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:09:03.506][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.507][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:09:03.507][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:09:03.508][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:09:03.509][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:09:03.509][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:09:03.510][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:09:03.510][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:09:03.511][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:09:03.512][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:09:03.512][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:09:03.513][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:09:03.514][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:09:03.514][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:09:03.515][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-04-15 08:09:03.516][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.517][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-04-15 08:09:03.518][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.518][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:09:03.519][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.520][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:09:03.521][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:09:03.521][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:09:03.522][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-04-15 08:09:03.523][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:09:03.523][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:09:03.524][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-04-15 08:09:03.525][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:09:03.525][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:09:03.526][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.527][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:09:03.527][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:09:03.528][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:09:03.529][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:09:03.529][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:09:03.530][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:09:03.531][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:09:03.531][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:09:03.532][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:09:03.533][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:09:03.533][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:09:03.534][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:09:03.534][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:09:03.535][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-15 08:09:03.536][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.537][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.543][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.549][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.552][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.555][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.562][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.568][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.577][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.583][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.586][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.589][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-04-15 08:09:03.590][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-04-15 08:09:03.592][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-04-15 08:09:03.593][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-04-15 08:09:03.594][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-04-15 08:09:03.594][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-04-15 08:09:03.596][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-04-15 08:09:03.596][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-04-15 08:09:03.597][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-04-15 08:09:03.598][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-04-15 08:09:03.599][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-04-15 08:09:03.600][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-04-15 08:09:03.601][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-04-15 08:09:03.602][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-04-15 08:09:03.603][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-04-15 08:09:03.604][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-04-15 08:09:03.605][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-04-15 08:09:03.606][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-04-15 08:09:03.607][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-04-15 08:09:03.608][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-04-15 08:09:03.609][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-04-15 08:09:03.610][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-04-15 08:09:03.611][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-04-15 08:09:03.612][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-04-15 08:09:03.613][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-04-15 08:09:03.614][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-04-15 08:09:03.615][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-04-15 08:09:03.616][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-04-15 08:09:03.617][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-04-15 08:09:03.618][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-04-15 08:09:03.619][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-04-15 08:09:03.620][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-04-15 08:09:03.621][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-04-15 08:09:03.622][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-04-15 08:09:03.623][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-04-15 08:09:03.624][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-04-15 08:09:03.625][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-04-15 08:09:03.626][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-04-15 08:09:03.627][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-04-15 08:09:03.628][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-04-15 08:09:03.629][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-04-15 08:09:03.630][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-04-15 08:09:03.631][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-04-15 08:09:03.632][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-04-15 08:09:03.633][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-04-15 08:09:03.634][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-04-15 08:09:03.634][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-04-15 08:09:03.635][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-04-15 08:09:03.636][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-04-15 08:09:03.637][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-04-15 08:09:03.638][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-04-15 08:09:03.639][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-04-15 08:09:03.640][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-04-15 08:09:03.641][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-04-15 08:09:03.642][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-04-15 08:09:03.643][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-04-15 08:09:03.644][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-04-15 08:09:03.645][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-04-15 08:09:03.646][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-04-15 08:09:03.647][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-04-15 08:09:03.648][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-04-15 08:09:03.649][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-04-15 08:09:03.650][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-04-15 08:09:03.651][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-04-15 08:09:03.652][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-04-15 08:09:03.653][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-04-15 08:09:03.654][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-04-15 08:09:03.655][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-04-15 08:09:03.656][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-04-15 08:09:03.657][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-04-15 08:09:03.658][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-04-15 08:09:03.659][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-04-15 08:09:03.660][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-04-15 08:09:03.661][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-04-15 08:09:03.662][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-04-15 08:09:03.663][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-04-15 08:09:03.664][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-04-15 08:09:03.664][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-04-15 08:09:03.665][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-04-15 08:09:03.666][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-04-15 08:09:03.667][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-04-15 08:09:03.668][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-04-15 08:09:03.669][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-04-15 08:09:03.670][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-04-15 08:09:03.672][initialize] This is biodb version 1.6.1.
biodb.DEBUG[2023-04-15 08:09:03.672][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-15 08:09:03.673][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.674][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.675][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:03.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:03.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.680][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:03.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:03.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:03.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:03.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.688][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:03.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:03.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:03.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:03.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.697][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:03.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:03.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.706][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:03.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:03.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:03.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:03.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.714][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:03.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:03.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.718][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:03.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:03.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:03.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:03.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.727][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:03.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:03.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.731][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:03.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:03.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:03.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:03.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.739][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:03.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:03.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.744][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:03.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:03.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:09:03.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:03.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:03.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:09:03.753][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2023-04-15 08:09:03.754][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2023-04-15 08:09:03.755][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.756][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2023-04-15 08:09:03.756][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.757][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:09:03.758][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.758][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:09:03.759][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.760][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:09:03.761][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2023-04-15 08:09:03.761][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:09:03.762][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.763][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2023-04-15 08:09:03.763][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:09:03.764][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2023-04-15 08:09:03.764][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2023-04-15 08:09:03.765][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:09:03.765][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:09:03.766][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-04-15 08:09:03.767][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:09:03.767][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:09:03.768][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:09:03.769][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:09:03.769][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:09:03.770][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:09:03.770][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-04-15 08:09:03.770][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2023-04-15 08:09:03.771][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:09:03.772][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:09:03.772][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.773][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:09:03.774][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2023-04-15 08:09:03.775][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.776][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2023-04-15 08:09:03.777][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.777][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:09:03.778][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.779][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:09:03.779][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.780][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:09:03.781][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-15 08:09:03.781][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:09:03.782][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.783][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2023-04-15 08:09:03.783][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:09:03.784][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2023-04-15 08:09:03.784][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2023-04-15 08:09:03.784][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2023-04-15 08:09:03.784][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2023-04-15 08:09:03.784][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2023-04-15 08:09:03.784][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2023-04-15 08:09:03.785][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:09:03.785][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:09:03.786][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-04-15 08:09:03.787][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:09:03.787][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:09:03.788][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:09:03.789][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:09:03.789][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:09:03.790][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:09:03.791][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:09:03.791][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-04-15 08:09:03.791][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:09:03.792][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:09:03.793][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.793][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:09:03.794][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2023-04-15 08:09:03.796][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:09:03.796][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2023-04-15 08:09:03.797][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.798][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:09:03.798][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.799][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:09:03.800][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.801][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:09:03.801][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-15 08:09:03.802][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:09:03.803][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.803][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2023-04-15 08:09:03.804][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:09:03.805][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2023-04-15 08:09:03.805][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:09:03.805][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:09:03.805][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:09:03.805][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:09:03.805][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:09:03.805][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:09:03.805][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:09:03.805][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:09:03.805][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:09:03.805][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2023-04-15 08:09:03.805][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:09:03.805][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:09:03.805][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:09:03.806][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:09:03.806][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:09:03.806][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-15 08:09:03.806][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-15 08:09:03.807][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2023-04-15 08:09:03.808][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:09:03.808][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:09:03.809][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:09:03.810][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:09:03.810][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:09:03.811][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:09:03.812][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:09:03.812][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-04-15 08:09:03.812][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2023-04-15 08:09:03.812][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:09:03.813][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:09:03.814][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.814][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-04-15 08:09:03.815][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2023-04-15 08:09:03.817][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.817][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2023-04-15 08:09:03.818][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.819][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:09:03.819][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.820][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:09:03.821][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.821][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:09:03.822][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-15 08:09:03.823][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:09:03.824][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.824][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2023-04-15 08:09:03.825][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:09:03.826][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2023-04-15 08:09:03.826][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2023-04-15 08:09:03.826][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:09:03.827][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:09:03.828][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2023-04-15 08:09:03.828][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:09:03.829][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:09:03.830][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:09:03.830][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:09:03.831][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:09:03.832][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:09:03.832][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:09:03.832][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-04-15 08:09:03.832][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2023-04-15 08:09:03.833][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:09:03.834][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:09:03.834][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:09:03.835][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-04-15 08:09:03.836][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2023-04-15 08:09:03.837][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-04-15 08:09:03.838][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-04-15 08:09:03.839][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2023-04-15 08:09:03.840][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-04-15 08:09:03.841][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2023-04-15 08:09:03.846][super$initialize] Initialize connector ncbi.pubchem.subst.
biodb.DEBUG[2023-04-15 08:09:03.846][super$initialize] Register connector ncbi.pubchem.subst with the request scheduler
biodb.DEBUG[2023-04-15 08:09:03.847][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.subst.
biodb.DEBUG[2023-04-15 08:09:03.848][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2023-04-15 08:09:03.849][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2023-04-15 08:09:03.850][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2023-04-15 08:09:03.851][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2023-04-15 08:09:03.852][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2023-04-15 08:09:03.852][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2023-04-15 08:09:03.853][rule$addConnector] Connector "ncbi.pubchem.subst" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-04-15 08:09:03.866][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.subst for database class ncbi.pubchem.subst .
biodb.INFO [2023-04-15 08:09:03.869][biodb::testThat]
biodb.INFO [2023-04-15 08:09:03.869][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2023-04-15 08:09:03.870][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:09:03.871][biodb::testThat]
biodb.TRACE[2023-04-15 08:09:03.872][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.subst-3-content.xml".
biodb.DEBUG[2023-04-15 08:09:03.873][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:09:03.876][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2023-04-15 08:09:03.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:09:03.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:03.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:03.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:03.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:03.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:03.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:09:03.886][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:03.886][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:03.887][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.888][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:03.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:03.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.892][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:03.892][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:03.893][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.894][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.894][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:03.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:03.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:09:03.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:09:03.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.900][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:09:03.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:09:03.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:03.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:03.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.906][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:09:03.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:09:03.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:03.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:03.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:03.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:03.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:03.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:03.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:03.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:03.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:03.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:03.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:03.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:03.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:09:03.929][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3.
biodb.TRACE[2023-04-15 08:09:03.931][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:09:03.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:09:03.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.933][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:09:03.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:09:03.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.936][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:09:03.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:09:03.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.939][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:09:03.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:09:03.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.941][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:09:03.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:09:03.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.944][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:09:03.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:09:03.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.947][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:09:03.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:09:03.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:03.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:03.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:09:03.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:09:03.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:03.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:03.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:03.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:03.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:03.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:03.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:03.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:03.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:03.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:03.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:03.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:03.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:09:03.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:09:03.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:09:03.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:09:03.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:09:03.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:09:03.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:03.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:03.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:03.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:03.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:03.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:03.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:03.997][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:03.998][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:03.999][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:03.999][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:04.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:04.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:04.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:04.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:04.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:04.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.013][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:04.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:04.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.016][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:04.016][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:04.017][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.018][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.018][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:04.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:04.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.026][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:04.026][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:04.027][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.028][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.031][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:04.032][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:04.032][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.033][ef$get] fields variable is a list.
biodb.INFO [2023-04-15 08:09:04.037][biodb::testThat]
biodb.INFO [2023-04-15 08:09:04.038][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2023-04-15 08:09:04.038][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:09:04.039][biodb::testThat]
biodb.DEBUG[2023-04-15 08:09:04.041][private$loadEntries] Creating entries from ids [1]: "3".
biodb.DEBUG[2023-04-15 08:09:04.042][conn$getEntryContent] Get PubChem Substance entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-15 08:09:04.043][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3".
biodb.TRACE[2023-04-15 08:09:04.045][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:09:04.046][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75/3.xml".
biodb.DEBUG[2023-04-15 08:09:04.047][conn$getEntryContent] 1 PubChem Substance entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:09:04.048][self$createEntryFromContent] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:09:04.048][self$createEntryFromContent] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2023-04-15 08:09:04.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:09:04.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:04.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:04.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:04.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:04.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:04.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:09:04.058][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:04.059][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:04.059][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.060][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:04.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:04.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.064][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:04.065][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:04.065][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.066][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:04.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:09:04.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:09:04.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:09:04.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:09:04.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:09:04.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:04.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:04.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.078][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:09:04.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:09:04.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:04.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:04.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:04.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:04.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:04.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:04.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:04.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:04.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:04.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:04.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:09:04.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:09:04.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:09:04.098][self$createEntryFromContent] Accession numbers: 3.
biodb.TRACE[2023-04-15 08:09:04.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-04-15 08:09:04.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-04-15 08:09:04.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:09:04.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:09:04.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:09:04.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:09:04.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-15 08:09:04.111][biodb::testThat]
biodb.INFO [2023-04-15 08:09:04.111][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2023-04-15 08:09:04.112][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:09:04.113][biodb::testThat]
biodb.INFO [2023-04-15 08:09:04.115][biodb::testThat]
biodb.INFO [2023-04-15 08:09:04.116][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2023-04-15 08:09:04.117][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:09:04.117][biodb::testThat]
biodb.WARN [2023-04-15 08:09:04.125][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2023-04-15 08:09:04.129][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2023-04-15 08:09:04.134][biodb::testThat]
biodb.INFO [2023-04-15 08:09:04.135][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2023-04-15 08:09:04.135][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:09:04.136][biodb::testThat]
biodb.TRACE[2023-04-15 08:09:04.142][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:09:04.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:09:04.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.145][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:09:04.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:09:04.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:09:04.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:09:04.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.151][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:09:04.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:09:04.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.153][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:09:04.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:09:04.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.156][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:09:04.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:09:04.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.159][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:09:04.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:09:04.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.163][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:09:04.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:09:04.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.165][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:09:04.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:09:04.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.168][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:09:04.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:09:04.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.171][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:09:04.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:09:04.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.174][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:09:04.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:09:04.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.176][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:09:04.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:09:04.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:09:04.179][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:09:04.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:09:04.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:09:04.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-15 08:09:04.183][biodb::testThat]
biodb.INFO [2023-04-15 08:09:04.184][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2023-04-15 08:09:04.185][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:09:04.185][biodb::testThat]
biodb.INFO [2023-04-15 08:09:04.188][biodb::testThat]
biodb.INFO [2023-04-15 08:09:04.189][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2023-04-15 08:09:04.190][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:09:04.190][biodb::testThat]
biodb.INFO [2023-04-15 08:09:04.194][biodb::testThat]
biodb.INFO [2023-04-15 08:09:04.194][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2023-04-15 08:09:04.195][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:09:04.196][biodb::testThat]
biodb.DEBUG[2023-04-15 08:09:04.198][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/substance/3".
biodb.DEBUG[2023-04-15 08:09:04.314][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/substance/3.
biodb.INFO [2023-04-15 08:09:04.496][biodb::testThat]
biodb.INFO [2023-04-15 08:09:04.497][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2023-04-15 08:09:04.498][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:09:04.498][biodb::testThat]
biodb.DEBUG[2023-04-15 08:09:04.605][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=3&t=l.
biodb.INFO [2023-04-15 08:09:04.699][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-04-15 08:09:04.702][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.subst from the request scheduler
biodb.INFO [2023-04-15 08:09:04.704][self$deleteConn] Connector "ncbi.pubchem.subst" deleted.
biodb.DEBUG[2023-04-15 08:09:04.706][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-04-15 08:09:04.708][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:09:04.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:09:04.711][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:09:04.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:09:04.712][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:09:04.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1037 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1037 ]
> 
> proc.time()
   user  system elapsed 
 35.827   0.919  67.220

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbNcbi/DESCRIPTION’ ... OK
* this is package ‘biodbNcbi’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbNcbi’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.1Mb
  sub-directories of 1Mb or more:
    testref   7.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... WARNING
'library' or 'require' call not declared from: ‘biodbNci’
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/00check.log’
for details.

Installation output

biodbNcbi.Rcheck/00install.out

* installing *source* package ‘biodbNcbi’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbNcbi)