Back to Long Tests report for BioC 3.16

This page was generated on 2023-04-15 21:30:03 -0400 (Sat, 15 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4282
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4310
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for biodbNcbi on lconway


To the developers/maintainers of the biodbNcbi package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 11/28HostnameOS / ArchCHECK
biodbNcbi 1.2.0  (landing page)
Pierrick Roger
Snapshot Date: 2023-04-15 06:55:01 -0400 (Sat, 15 Apr 2023)
git_url: https://git.bioconductor.org/packages/biodbNcbi
git_branch: RELEASE_3_16
git_last_commit: 987e49c
git_last_commit_date: 2022-11-01 11:26:40 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  WARNINGS  
palomino4Windows Server 2022 Datacenter / x64  WARNINGS  
lconwaymacOS 12.5.1 Monterey / x86_64  WARNINGS  

Summary

Package: biodbNcbi
Version: 1.2.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.2.0.tar.gz
StartedAt: 2023-04-15 08:01:34 -0400 (Sat, 15 Apr 2023)
EndedAt: 2023-04-15 08:03:41 -0400 (Sat, 15 Apr 2023)
EllapsedTime: 126.9 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbNcbi.Rcheck
Warnings: 1

Tests output

biodbNcbi.Rcheck/tests/testthat.Rout


R version 4.2.3 (2023-03-15) -- "Shortstop Beagle"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

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Type 'license()' or 'licence()' for distribution details.

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbNci)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbNcbi")
Loading required package: biodbNcbi
biodb.INFO [2023-04-15 08:02:19.225][biodb::testContext]
biodb.INFO [2023-04-15 08:02:19.242][biodb::testContext] ********************************************************************************
biodb.INFO [2023-04-15 08:02:19.243][biodb::testContext] Test context - CCDS long tests
biodb.INFO [2023-04-15 08:02:19.244][biodb::testContext] ********************************************************************************
biodb.INFO [2023-04-15 08:02:19.245][biodb::testContext]
biodb.INFO [2023-04-15 08:02:19.250][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.6.1.
biodb.DEBUG[2023-04-15 08:02:19.252][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.2/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2023-04-15 08:02:19.257][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-15 08:02:19.258][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-04-15 08:02:19.259][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-04-15 08:02:19.260][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.262][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-04-15 08:02:19.274][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-04-15 08:02:19.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.277][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-04-15 08:02:19.278][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-04-15 08:02:19.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.281][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-04-15 08:02:19.282][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-04-15 08:02:19.283][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-04-15 08:02:19.284][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.286][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-04-15 08:02:19.287][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-04-15 08:02:19.287][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-04-15 08:02:19.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.290][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-04-15 08:02:19.291][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-04-15 08:02:19.292][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.294][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-04-15 08:02:19.295][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-04-15 08:02:19.296][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-04-15 08:02:19.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.298][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-04-15 08:02:19.299][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-04-15 08:02:19.300][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.302][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-04-15 08:02:19.303][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-04-15 08:02:19.304][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-04-15 08:02:19.304][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.307][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-04-15 08:02:19.307][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-04-15 08:02:19.308][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-04-15 08:02:19.309][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-04-15 08:02:19.310][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-04-15 08:02:19.310][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-04-15 08:02:19.311][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.313][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-04-15 08:02:19.314][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-04-15 08:02:19.315][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.317][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-04-15 08:02:19.318][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-04-15 08:02:19.319][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.321][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-04-15 08:02:19.322][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-04-15 08:02:19.322][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.324][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-04-15 08:02:19.325][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-04-15 08:02:19.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.328][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-04-15 08:02:19.329][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-04-15 08:02:19.330][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.332][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-04-15 08:02:19.333][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-04-15 08:02:19.348][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-04-15 08:02:19.349][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.351][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-04-15 08:02:19.352][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-04-15 08:02:19.353][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-04-15 08:02:19.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.358][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-04-15 08:02:19.388][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:19.399][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-04-15 08:02:19.400][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.401][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:02:19.402][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.402][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:02:19.403][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:19.404][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:02:19.405][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-04-15 08:02:19.405][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:02:19.406][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.407][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-04-15 08:02:19.408][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:02:19.408][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:19.409][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.410][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:02:19.410][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-15 08:02:19.410][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-15 08:02:19.410][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-04-15 08:02:19.410][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-04-15 08:02:19.411][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:02:19.412][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:19.412][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:19.413][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:02:19.414][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:19.414][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:19.415][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:02:19.416][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:19.417][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:02:19.417][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:02:19.418][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:19.419][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:19.420][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-04-15 08:02:19.421][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:19.422][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-04-15 08:02:19.423][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.424][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:02:19.424][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.425][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:02:19.426][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:19.427][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:02:19.428][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-04-15 08:02:19.428][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:02:19.429][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.430][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-04-15 08:02:19.431][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:02:19.431][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:19.432][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.433][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:02:19.433][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-15 08:02:19.433][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-15 08:02:19.433][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-04-15 08:02:19.433][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-04-15 08:02:19.434][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:02:19.435][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:19.435][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:19.436][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:02:19.437][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:19.437][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:19.438][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:02:19.439][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:19.440][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:02:19.440][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:02:19.441][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:19.442][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:19.443][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-04-15 08:02:19.444][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.445][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-04-15 08:02:19.446][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.447][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:02:19.447][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.448][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:02:19.449][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:19.450][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:02:19.451][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-04-15 08:02:19.451][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:02:19.452][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:19.453][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-04-15 08:02:19.454][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:02:19.454][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:19.455][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.456][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:19.457][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:02:19.458][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:19.458][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:19.459][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:02:19.460][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:19.460][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:19.461][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:02:19.462][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:19.463][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:02:19.463][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:02:19.464][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:19.465][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:19.466][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-04-15 08:02:19.467][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.468][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-04-15 08:02:19.469][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.470][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:02:19.470][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.471][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:02:19.472][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:19.473][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:02:19.473][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-04-15 08:02:19.474][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:02:19.475][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:19.476][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-04-15 08:02:19.477][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:02:19.477][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:19.478][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.479][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:19.480][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:02:19.480][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:19.481][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:19.482][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:02:19.483][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:19.483][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:19.484][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:02:19.485][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:19.486][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:02:19.486][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:02:19.487][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:19.488][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:19.491][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-15 08:02:19.492][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.501][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.504][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.508][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.511][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.514][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.518][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.532][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.539][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.542][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.545][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.549][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.552][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.556][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-04-15 08:02:19.560][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-04-15 08:02:19.561][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-04-15 08:02:19.562][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-04-15 08:02:19.563][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-04-15 08:02:19.564][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-04-15 08:02:19.565][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-04-15 08:02:19.566][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-04-15 08:02:19.567][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-04-15 08:02:19.569][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-04-15 08:02:19.570][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-04-15 08:02:19.571][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-04-15 08:02:19.572][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-04-15 08:02:19.573][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-04-15 08:02:19.574][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-04-15 08:02:19.575][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-04-15 08:02:19.576][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-04-15 08:02:19.577][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-04-15 08:02:19.578][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-04-15 08:02:19.580][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-04-15 08:02:19.581][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-04-15 08:02:19.582][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-04-15 08:02:19.583][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-04-15 08:02:19.584][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-04-15 08:02:19.585][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-04-15 08:02:19.586][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-04-15 08:02:19.587][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-04-15 08:02:19.588][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-04-15 08:02:19.589][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-04-15 08:02:19.591][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-04-15 08:02:19.592][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-04-15 08:02:19.593][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-04-15 08:02:19.594][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-04-15 08:02:19.595][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-04-15 08:02:19.596][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-04-15 08:02:19.597][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-04-15 08:02:19.598][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-04-15 08:02:19.599][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-04-15 08:02:19.600][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-04-15 08:02:19.601][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-04-15 08:02:19.602][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-04-15 08:02:19.603][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-04-15 08:02:19.604][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-04-15 08:02:19.605][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-04-15 08:02:19.606][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-04-15 08:02:19.608][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-04-15 08:02:19.609][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-04-15 08:02:19.610][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-04-15 08:02:19.611][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-04-15 08:02:19.612][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-04-15 08:02:19.613][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-04-15 08:02:19.614][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-04-15 08:02:19.615][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-04-15 08:02:19.616][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-04-15 08:02:19.617][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-04-15 08:02:19.618][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-04-15 08:02:19.619][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-04-15 08:02:19.621][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-04-15 08:02:19.622][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-04-15 08:02:19.628][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-04-15 08:02:19.629][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-04-15 08:02:19.630][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-04-15 08:02:19.631][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-04-15 08:02:19.632][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-04-15 08:02:19.633][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-04-15 08:02:19.634][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-04-15 08:02:19.635][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-04-15 08:02:19.636][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-04-15 08:02:19.637][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-04-15 08:02:19.638][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-04-15 08:02:19.639][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-04-15 08:02:19.640][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-04-15 08:02:19.641][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-04-15 08:02:19.642][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-04-15 08:02:19.643][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-04-15 08:02:19.644][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-04-15 08:02:19.645][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-04-15 08:02:19.646][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-04-15 08:02:19.647][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-04-15 08:02:19.648][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-04-15 08:02:19.649][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-04-15 08:02:19.650][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-04-15 08:02:19.651][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-04-15 08:02:19.656][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-04-15 08:02:19.657][initialize] This is biodb version 1.6.1.
biodb.DEBUG[2023-04-15 08:02:19.659][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-15 08:02:19.660][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.661][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.666][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:19.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:19.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:19.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:19.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.675][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:19.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:19.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.680][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:19.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:19.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.685][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:19.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:19.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:19.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:19.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:19.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:19.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.699][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:19.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:19.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:19.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:19.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.709][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:19.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:19.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:19.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:19.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.718][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:19.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:19.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.723][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:19.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:19.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.728][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:19.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:19.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.733][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:19.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:19.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.737][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:19.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:19.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.742][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:19.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:19.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:19.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:19.775][bdb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2023-04-15 08:02:19.782][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2023-04-15 08:02:19.783][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.784][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2023-04-15 08:02:19.785][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.786][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:02:19.786][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.787][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:02:19.788][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.789][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:02:19.789][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2023-04-15 08:02:19.790][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:02:19.791][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.792][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2023-04-15 08:02:19.793][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:02:19.793][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2023-04-15 08:02:19.793][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2023-04-15 08:02:19.794][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:19.795][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:19.796][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-04-15 08:02:19.797][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:19.797][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:19.798][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:02:19.799][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:19.799][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:19.800][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:02:19.801][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-04-15 08:02:19.801][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2023-04-15 08:02:19.802][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:02:19.802][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:02:19.803][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.804][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:19.805][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2023-04-15 08:02:19.806][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.807][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2023-04-15 08:02:19.808][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.809][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:02:19.810][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.810][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:02:19.811][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.812][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:02:19.813][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-15 08:02:19.813][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:02:19.814][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.815][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2023-04-15 08:02:19.816][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:02:19.816][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2023-04-15 08:02:19.816][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2023-04-15 08:02:19.816][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2023-04-15 08:02:19.816][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2023-04-15 08:02:19.816][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2023-04-15 08:02:19.816][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2023-04-15 08:02:19.817][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:19.818][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:02:19.819][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-04-15 08:02:19.820][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:19.820][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:19.821][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:02:19.822][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:19.822][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:19.823][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:02:19.824][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:02:19.824][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-04-15 08:02:19.825][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:02:19.825][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:02:19.826][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.827][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:19.828][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2023-04-15 08:02:19.830][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:19.830][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2023-04-15 08:02:19.831][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.832][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:02:19.833][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.833][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:02:19.834][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.835][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:02:19.836][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-15 08:02:19.837][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:02:19.837][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.838][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2023-04-15 08:02:19.839][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:02:19.840][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2023-04-15 08:02:19.840][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:02:19.840][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:02:19.840][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:02:19.840][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:02:19.840][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:02:19.840][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:02:19.840][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:02:19.840][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:02:19.840][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:02:19.840][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2023-04-15 08:02:19.840][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:02:19.840][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:02:19.840][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:02:19.841][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:19.842][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:02:19.842][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-15 08:02:19.842][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-15 08:02:19.842][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2023-04-15 08:02:19.843][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:19.844][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:19.845][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:02:19.845][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:19.846][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:19.847][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:02:19.848][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:02:19.848][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-04-15 08:02:19.848][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2023-04-15 08:02:19.849][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:02:19.849][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:02:19.850][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.851][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-04-15 08:02:19.852][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2023-04-15 08:02:19.853][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.854][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2023-04-15 08:02:19.855][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.855][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:02:19.856][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.857][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:02:19.858][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.859][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:02:19.859][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-15 08:02:19.860][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:02:19.861][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.862][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2023-04-15 08:02:19.862][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:02:19.863][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2023-04-15 08:02:19.863][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2023-04-15 08:02:19.864][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:19.865][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:19.866][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2023-04-15 08:02:19.867][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:19.867][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:19.868][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:02:19.869][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:19.870][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:19.871][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:02:19.871][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:02:19.871][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-04-15 08:02:19.871][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2023-04-15 08:02:19.872][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:02:19.873][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:02:19.874][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:19.875][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-04-15 08:02:19.880][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2023-04-15 08:02:19.881][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-04-15 08:02:19.882][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-04-15 08:02:19.884][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2023-04-15 08:02:19.885][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-04-15 08:02:19.886][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2023-04-15 08:02:19.910][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2023-04-15 08:02:19.911][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2023-04-15 08:02:19.915][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2023-04-15 08:02:19.918][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2023-04-15 08:02:19.922][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:02:19.923][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:02:19.924][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2023-04-15 08:02:19.925][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:02:19.925][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:02:19.926][bdb$getFactory()$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.INFO [2023-04-15 08:02:19.933][biodb::testThat]
biodb.INFO [2023-04-15 08:02:19.934][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2023-04-15 08:02:19.935][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:02:19.936][biodb::testThat]
biodb.TRACE[2023-04-15 08:02:19.939][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS12227.1-content.html".
biodb.DEBUG[2023-04-15 08:02:19.940][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:02:19.943][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2023-04-15 08:02:19.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:19.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:19.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:19.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:19.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:19.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:19.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:02:19.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:19.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:19.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:19.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:19.994][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:20.003][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.004][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.005][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.024][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:20.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.028][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:20.090][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS12227.1.
biodb.TRACE[2023-04-15 08:02:20.092][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.095][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.114][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:20.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:20.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.117][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:20.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:20.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.120][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:20.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:20.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.123][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:20.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:20.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.155][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.185][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.206][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.207][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.207][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.208][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.217][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:20.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.220][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.223][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.226][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:20.232][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.232][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.233][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.234][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:20.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.242][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.243][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.243][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.244][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.248][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.249][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.249][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.250][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.263][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS43240.1-content.html".
biodb.DEBUG[2023-04-15 08:02:20.287][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:02:20.288][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2023-04-15 08:02:20.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:20.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:20.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:20.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:20.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:20.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:20.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:02:20.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.325][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:20.326][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.327][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.327][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.328][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:20.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.335][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:20.377][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS43240.1.
biodb.TRACE[2023-04-15 08:02:20.392][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.395][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.398][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:20.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:20.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.402][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:20.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:20.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.405][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:20.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:20.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.408][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:20.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:20.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.451][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:20.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.478][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.478][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.479][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.480][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.489][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:20.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.492][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.495][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.498][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:20.499][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.500][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.500][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.501][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:20.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.509][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.514][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:20.515][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.515][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:20.519][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:20.520][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:20.521][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:20.521][ef$get] fields variable is a list.
biodb.INFO [2023-04-15 08:02:20.526][biodb::testThat]
biodb.INFO [2023-04-15 08:02:20.526][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2023-04-15 08:02:20.527][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:02:20.528][biodb::testThat]
biodb.DEBUG[2023-04-15 08:02:20.530][private$loadEntries] Creating entries from ids [2]: "CCDS12227.1, CCDS43240.1".
biodb.DEBUG[2023-04-15 08:02:20.536][conn$getEntryContent] Get NCBI CCDS entry content(s) for 2 id(s)...
biodb.TRACE[2023-04-15 08:02:20.538][cch$loadFileContent] Trying to load 2 files from cache: [2]: "CCDS12227.1, CCDS43240.1".
biodb.INFO [2023-04-15 08:02:20.539][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704" for "ncbi.ccds-c3bf0257a03be04fd46e362b99907704".
biodb.TRACE[2023-04-15 08:02:20.540][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2023-04-15 08:02:20.541][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:02:20.542][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:02:20.543][conn$getEntryContent] 2 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-04-15 08:02:20.543][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:02:20.544][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-04-15 08:02:20.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:20.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:20.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:20.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:20.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:20.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:20.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:20.557][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2023-04-15 08:02:20.572][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:02:20.573][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:02:20.574][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.TRACE[2023-04-15 08:02:25.325][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1).
biodb.DEBUG[2023-04-15 08:02:26.736][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:02:26.738][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.content"
biodb.TRACE[2023-04-15 08:02:26.748][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.request"
biodb.DEBUG[2023-04-15 08:02:26.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:26.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:26.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:26.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:26.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:26.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:26.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:26.777][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.DEBUG[2023-04-15 08:02:26.787][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:02:26.788][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:02:26.798][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.TRACE[2023-04-15 08:02:28.208][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1).
biodb.DEBUG[2023-04-15 08:02:29.402][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:02:29.404][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.content"
biodb.TRACE[2023-04-15 08:02:29.407][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.request"
biodb.TRACE[2023-04-15 08:02:29.409][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS12227.1.html, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html"
biodb.DEBUG[2023-04-15 08:02:29.411][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:02:29.412][self$createEntryFromContent] Creating NCBI CCDS entries from 2 content(s).
biodb.DEBUG[2023-04-15 08:02:29.413][self$createEntryFromContent] Parsing 2 NCBI CCDS entries.
biodb.DEBUG[2023-04-15 08:02:29.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:29.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:29.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:29.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:29.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:29.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:29.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:02:29.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:29.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:29.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.447][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:29.448][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:29.449][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.450][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.451][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:29.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:29.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:29.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:29.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:29.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:29.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:29.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:29.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:29.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:29.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:29.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:29.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:29.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:29.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:29.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:29.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:29.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:29.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:29.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:29.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:29.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:29.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:29.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:02:29.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:29.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:29.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.496][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:29.497][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:29.501][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.504][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.505][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:29.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:29.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:29.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:29.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:29.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:29.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:29.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:29.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:29.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:29.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:29.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:29.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:29.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:29.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:29.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:29.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:29.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:29.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:29.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:29.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:29.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:29.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:29.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:29.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:29.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:29.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:29.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:29.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:29.548][self$createEntryFromContent] Accession numbers: CCDS12227.1, CCDS43240.1.
biodb.TRACE[2023-04-15 08:02:29.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-04-15 08:02:29.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-04-15 08:02:29.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:02:29.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:02:29.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:02:29.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:02:29.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-04-15 08:02:29.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-04-15 08:02:29.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:02:29.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:02:29.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:02:29.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:02:29.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-15 08:02:29.578][biodb::testThat]
biodb.INFO [2023-04-15 08:02:29.579][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2023-04-15 08:02:29.580][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:02:29.580][biodb::testThat]
biodb.INFO [2023-04-15 08:02:29.583][biodb::testThat]
biodb.INFO [2023-04-15 08:02:29.584][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2023-04-15 08:02:29.584][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:02:29.585][biodb::testThat]
biodb.WARN [2023-04-15 08:02:29.603][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2023-04-15 08:02:29.617][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2023-04-15 08:02:29.624][biodb::testThat]
biodb.INFO [2023-04-15 08:02:29.624][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2023-04-15 08:02:29.625][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:02:29.626][biodb::testThat]
biodb.TRACE[2023-04-15 08:02:29.647][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:29.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:29.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.650][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:29.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:29.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.653][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:29.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:29.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.656][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:29.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:29.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.659][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:29.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:29.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.662][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:29.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:29.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.671][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:29.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:29.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.674][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:29.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:29.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.677][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:29.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:29.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.680][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:29.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:29.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.683][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:29.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:29.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:29.686][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:29.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:29.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:29.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-15 08:02:29.690][biodb::testThat]
biodb.INFO [2023-04-15 08:02:29.691][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2023-04-15 08:02:29.692][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:02:29.692][biodb::testThat]
biodb.INFO [2023-04-15 08:02:29.697][biodb::testThat]
biodb.INFO [2023-04-15 08:02:29.697][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2023-04-15 08:02:29.698][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:02:29.699][biodb::testThat]
biodb.INFO [2023-04-15 08:02:29.706][biodb::testThat]
biodb.INFO [2023-04-15 08:02:29.707][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2023-04-15 08:02:29.708][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:02:29.708][biodb::testThat]
biodb.DEBUG[2023-04-15 08:02:29.711][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2023-04-15 08:02:30.959][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1.
biodb.INFO [2023-04-15 08:02:32.436][biodb::testThat]
biodb.INFO [2023-04-15 08:02:32.436][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2023-04-15 08:02:32.437][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:02:32.438][biodb::testThat]
biodb.INFO [2023-04-15 08:02:32.440][bdb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-04-15 08:02:32.441][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2023-04-15 08:02:32.442][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2023-04-15 08:02:32.443][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-04-15 08:02:32.443][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:32.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:32.445][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.446][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-04-15 08:02:32.453][biodb::testContext]
biodb.INFO [2023-04-15 08:02:32.454][biodb::testContext] ********************************************************************************
biodb.INFO [2023-04-15 08:02:32.455][biodb::testContext] Test context - Gene long tests
biodb.INFO [2023-04-15 08:02:32.455][biodb::testContext] ********************************************************************************
biodb.INFO [2023-04-15 08:02:32.456][biodb::testContext]
biodb.INFO [2023-04-15 08:02:32.458][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.6.1.
biodb.DEBUG[2023-04-15 08:02:32.459][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.2/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2023-04-15 08:02:32.462][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-15 08:02:32.462][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-04-15 08:02:32.463][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-04-15 08:02:32.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.466][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-04-15 08:02:32.467][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-04-15 08:02:32.467][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.469][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-04-15 08:02:32.470][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-04-15 08:02:32.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.472][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-04-15 08:02:32.473][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-04-15 08:02:32.474][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-04-15 08:02:32.475][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.477][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-04-15 08:02:32.477][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-04-15 08:02:32.478][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-04-15 08:02:32.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.481][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-04-15 08:02:32.481][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-04-15 08:02:32.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.491][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-04-15 08:02:32.491][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-04-15 08:02:32.492][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-04-15 08:02:32.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.495][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-04-15 08:02:32.496][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-04-15 08:02:32.496][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.498][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-04-15 08:02:32.499][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-04-15 08:02:32.500][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-04-15 08:02:32.500][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.502][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-04-15 08:02:32.503][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-04-15 08:02:32.504][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-04-15 08:02:32.504][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-04-15 08:02:32.505][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-04-15 08:02:32.506][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-04-15 08:02:32.506][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.508][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-04-15 08:02:32.509][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-04-15 08:02:32.510][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.512][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-04-15 08:02:32.512][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-04-15 08:02:32.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.515][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-04-15 08:02:32.516][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-04-15 08:02:32.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.518][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-04-15 08:02:32.519][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-04-15 08:02:32.520][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.522][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-04-15 08:02:32.522][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-04-15 08:02:32.523][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.525][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-04-15 08:02:32.525][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-04-15 08:02:32.539][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-04-15 08:02:32.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.542][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-04-15 08:02:32.543][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-04-15 08:02:32.544][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-04-15 08:02:32.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.546][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-04-15 08:02:32.548][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:32.548][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-04-15 08:02:32.549][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.550][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:02:32.550][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.551][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:02:32.552][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:32.553][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:02:32.553][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-04-15 08:02:32.554][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:02:32.555][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.555][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-04-15 08:02:32.556][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:02:32.557][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:32.557][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.558][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:02:32.558][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-15 08:02:32.558][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-15 08:02:32.558][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-04-15 08:02:32.558][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-04-15 08:02:32.559][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:02:32.559][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:32.560][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:32.565][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:02:32.566][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:32.566][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:32.567][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:02:32.567][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:32.568][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:02:32.569][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:02:32.569][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:32.570][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:32.571][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-04-15 08:02:32.572][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:32.573][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-04-15 08:02:32.574][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.575][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:02:32.575][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.576][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:02:32.577][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:32.578][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:02:32.579][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-04-15 08:02:32.579][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:02:32.580][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.581][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-04-15 08:02:32.581][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:02:32.582][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:32.583][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.584][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:02:32.584][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-15 08:02:32.584][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-15 08:02:32.584][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-04-15 08:02:32.584][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-04-15 08:02:32.584][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:02:32.585][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:32.586][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:32.586][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:02:32.587][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:32.588][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:32.588][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:02:32.589][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:32.590][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:02:32.590][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:02:32.591][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:32.592][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:32.593][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-04-15 08:02:32.594][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.595][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-04-15 08:02:32.595][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.596][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:02:32.597][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.598][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:02:32.598][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:32.599][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:02:32.600][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-04-15 08:02:32.600][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:02:32.601][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:32.602][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-04-15 08:02:32.602][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:02:32.603][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:32.604][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.605][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:32.605][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:02:32.606][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:32.607][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:32.607][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:02:32.608][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:32.608][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:32.609][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:02:32.610][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:32.611][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:02:32.611][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:02:32.612][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:32.612][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:32.613][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-04-15 08:02:32.614][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.615][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-04-15 08:02:32.616][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.617][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:02:32.617][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.618][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:02:32.619][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:32.619][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:02:32.620][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-04-15 08:02:32.621][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:02:32.622][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:32.622][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-04-15 08:02:32.623][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:02:32.624][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:32.629][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.630][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:32.631][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:02:32.631][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:32.632][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:32.633][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:02:32.633][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:32.634][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:32.635][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:02:32.636][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:32.636][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:02:32.637][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:02:32.638][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:32.638][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:32.639][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-15 08:02:32.640][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.641][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.648][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.655][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.661][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.681][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.688][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.695][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.698][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.702][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-04-15 08:02:32.703][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-04-15 08:02:32.704][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-04-15 08:02:32.705][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-04-15 08:02:32.706][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-04-15 08:02:32.707][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-04-15 08:02:32.708][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-04-15 08:02:32.709][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-04-15 08:02:32.710][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-04-15 08:02:32.711][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-04-15 08:02:32.712][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-04-15 08:02:32.713][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-04-15 08:02:32.714][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-04-15 08:02:32.715][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-04-15 08:02:32.716][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-04-15 08:02:32.717][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-04-15 08:02:32.718][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-04-15 08:02:32.719][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-04-15 08:02:32.720][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-04-15 08:02:32.720][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-04-15 08:02:32.721][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-04-15 08:02:32.722][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-04-15 08:02:32.723][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-04-15 08:02:32.724][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-04-15 08:02:32.725][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-04-15 08:02:32.726][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-04-15 08:02:32.727][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-04-15 08:02:32.728][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-04-15 08:02:32.729][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-04-15 08:02:32.730][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-04-15 08:02:32.731][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-04-15 08:02:32.732][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-04-15 08:02:32.733][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-04-15 08:02:32.734][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-04-15 08:02:32.735][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-04-15 08:02:32.736][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-04-15 08:02:32.737][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-04-15 08:02:32.738][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-04-15 08:02:32.739][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-04-15 08:02:32.740][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-04-15 08:02:32.741][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-04-15 08:02:32.742][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-04-15 08:02:32.743][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-04-15 08:02:32.744][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-04-15 08:02:32.745][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-04-15 08:02:32.746][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-04-15 08:02:32.747][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-04-15 08:02:32.748][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-04-15 08:02:32.749][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-04-15 08:02:32.750][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-04-15 08:02:32.755][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-04-15 08:02:32.756][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-04-15 08:02:32.757][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-04-15 08:02:32.758][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-04-15 08:02:32.759][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-04-15 08:02:32.760][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-04-15 08:02:32.761][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-04-15 08:02:32.762][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-04-15 08:02:32.763][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-04-15 08:02:32.764][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-04-15 08:02:32.765][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-04-15 08:02:32.766][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-04-15 08:02:32.767][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-04-15 08:02:32.768][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-04-15 08:02:32.769][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-04-15 08:02:32.770][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-04-15 08:02:32.771][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-04-15 08:02:32.772][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-04-15 08:02:32.773][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-04-15 08:02:32.774][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-04-15 08:02:32.775][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-04-15 08:02:32.776][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-04-15 08:02:32.777][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-04-15 08:02:32.778][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-04-15 08:02:32.779][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-04-15 08:02:32.780][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-04-15 08:02:32.781][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-04-15 08:02:32.782][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-04-15 08:02:32.783][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-04-15 08:02:32.784][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-04-15 08:02:32.785][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-04-15 08:02:32.786][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-04-15 08:02:32.787][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-04-15 08:02:32.788][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-04-15 08:02:32.789][initialize] This is biodb version 1.6.1.
biodb.DEBUG[2023-04-15 08:02:32.790][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-15 08:02:32.791][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.792][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.793][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:32.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:32.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:32.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:32.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.802][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:32.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:32.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.807][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:32.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:32.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:32.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:32.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:32.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:32.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.849][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:32.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:32.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:32.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:32.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.858][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:32.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:32.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:32.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:32.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:32.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:32.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:32.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:32.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.875][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:32.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:32.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.880][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:32.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:32.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.884][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:32.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:32.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.889][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:32.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:32.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.893][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:02:32.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:32.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:32.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:32.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:32.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:32.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:32.898][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2023-04-15 08:02:32.900][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2023-04-15 08:02:32.906][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.907][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2023-04-15 08:02:32.908][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.908][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:02:32.909][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.910][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:02:32.911][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.911][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:02:32.912][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2023-04-15 08:02:32.913][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:02:32.914][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.914][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2023-04-15 08:02:32.915][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:02:32.916][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2023-04-15 08:02:32.916][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2023-04-15 08:02:32.917][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:32.918][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:32.919][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-04-15 08:02:32.919][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:32.920][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:32.921][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:02:32.922][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:32.922][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:32.923][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:02:32.924][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-04-15 08:02:32.924][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2023-04-15 08:02:32.925][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:02:32.926][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:02:32.926][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.927][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:32.928][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2023-04-15 08:02:32.930][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.930][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2023-04-15 08:02:32.931][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.932][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:02:32.933][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.933][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:02:32.934][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.935][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:02:32.936][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-15 08:02:32.937][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:02:32.937][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.938][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2023-04-15 08:02:32.939][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:02:32.940][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2023-04-15 08:02:32.940][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2023-04-15 08:02:32.940][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2023-04-15 08:02:32.940][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2023-04-15 08:02:32.940][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2023-04-15 08:02:32.940][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2023-04-15 08:02:32.941][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:32.942][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:02:32.942][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-04-15 08:02:32.943][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:32.944][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:32.945][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:02:32.945][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:32.946][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:32.947][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:02:32.948][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:02:32.948][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-04-15 08:02:32.949][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:02:32.949][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:02:32.950][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.951][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:32.952][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2023-04-15 08:02:32.953][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:32.954][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2023-04-15 08:02:32.955][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.956][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:02:32.957][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.957][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:02:32.958][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.959][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:02:32.960][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-15 08:02:32.961][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:02:32.961][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:32.962][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2023-04-15 08:02:32.963][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:02:32.964][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2023-04-15 08:02:32.964][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:02:32.964][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:02:32.964][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:02:32.964][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:02:32.964][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:02:32.964][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:02:32.964][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:02:32.964][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:02:32.964][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:02:32.964][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2023-04-15 08:02:32.964][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:02:32.964][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:02:32.964][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:02:32.965][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:32.966][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:02:32.966][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-15 08:02:32.966][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-15 08:02:32.967][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2023-04-15 08:02:32.967][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:32.968][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:32.969][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:02:32.970][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:32.970][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:32.971][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:02:33.091][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:02:33.091][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-04-15 08:02:33.091][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2023-04-15 08:02:33.092][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:02:33.093][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:02:33.093][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:33.094][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-04-15 08:02:33.095][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2023-04-15 08:02:33.096][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:33.097][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2023-04-15 08:02:33.098][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:33.098][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:02:33.099][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:33.099][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:02:33.100][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:33.101][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:02:33.101][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-15 08:02:33.102][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:02:33.103][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:33.103][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2023-04-15 08:02:33.104][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:02:33.105][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2023-04-15 08:02:33.105][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2023-04-15 08:02:33.105][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:02:33.106][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:02:33.107][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2023-04-15 08:02:33.107][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:33.108][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:33.109][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:02:33.109][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:02:33.110][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:02:33.110][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:02:33.111][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:02:33.111][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-04-15 08:02:33.111][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2023-04-15 08:02:33.112][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:02:33.112][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:02:33.113][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:02:33.114][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-04-15 08:02:33.114][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2023-04-15 08:02:33.115][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-04-15 08:02:33.116][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-04-15 08:02:33.118][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2023-04-15 08:02:33.118][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-04-15 08:02:33.120][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2023-04-15 08:02:33.125][super$initialize] Initialize connector ncbi.gene.
biodb.DEBUG[2023-04-15 08:02:33.126][super$initialize] Register connector ncbi.gene with the request scheduler
biodb.DEBUG[2023-04-15 08:02:33.127][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.gene.
biodb.DEBUG[2023-04-15 08:02:33.128][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2023-04-15 08:02:33.128][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:02:33.129][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:02:33.130][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2023-04-15 08:02:33.131][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:02:33.131][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:02:33.184][biodb$getFactory()$createConn] Creating new connector ncbi.gene for database class ncbi.gene .
biodb.INFO [2023-04-15 08:02:33.187][biodb::testThat]
biodb.INFO [2023-04-15 08:02:33.188][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2023-04-15 08:02:33.189][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:02:33.189][biodb::testThat]
biodb.TRACE[2023-04-15 08:02:33.194][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-2833-content.xml".
biodb.DEBUG[2023-04-15 08:02:33.195][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:02:33.197][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2023-04-15 08:02:33.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:33.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:33.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:33.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:33.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:33.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:33.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:02:33.219][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:33.220][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:33.221][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.221][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:33.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:33.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:33.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:33.226][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:33.227][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:33.227][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.228][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:33.229][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:33.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:33.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:33.233][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:33.233][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:33.234][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.235][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:33.236][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:33.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:33.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:33.239][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:33.240][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:33.241][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.242][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:33.243][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:33.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:33.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:33.246][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:33.247][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:33.248][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.248][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:33.250][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:33.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:33.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:33.253][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:33.254][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:33.254][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.255][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:33.257][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:33.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:33.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:33.264][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:33.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:33.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:33.267][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:33.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:33.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:33.270][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:33.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:33.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:33.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:33.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:33.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:33.276][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:33.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:33.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:33.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:33.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:33.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:33.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:33.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:33.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:33.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:33.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:33.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:33.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:33.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:33.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:33.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:33.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:33.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:33.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:33.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:33.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:33.297][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2833.
biodb.TRACE[2023-04-15 08:02:33.299][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:33.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:33.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:33.302][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:33.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:33.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:33.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:33.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:33.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:33.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:33.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:33.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:33.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:33.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:33.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:33.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:33.314][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2023-04-15 08:02:33.339][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2023-04-15 08:02:33.340][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2023-04-15 08:02:33.341][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2023-04-15 08:02:33.362][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2023-04-15 08:02:33.362][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:02:33.363][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2023-04-15 08:02:33.371][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:02:33.372][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:02:33.373][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2023-04-15 08:02:33.374][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:02:33.375][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2023-04-15 08:02:33.375][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:02:33.376][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-04-15 08:02:33.385][self$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.DEBUG[2023-04-15 08:02:33.386][private$loadEntries] Creating entries from ids [1]: "CCDS14416.1".
biodb.DEBUG[2023-04-15 08:02:33.387][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-15 08:02:33.389][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14416.1".
biodb.TRACE[2023-04-15 08:02:33.390][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-04-15 08:02:33.390][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:02:33.391][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:02:33.392][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-04-15 08:02:33.393][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:02:33.393][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-04-15 08:02:33.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:33.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:33.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:33.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:33.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:33.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:33.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:33.404][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1".
biodb.DEBUG[2023-04-15 08:02:33.406][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:02:33.407][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:02:33.408][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1".
biodb.TRACE[2023-04-15 08:02:34.798][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1).
biodb.DEBUG[2023-04-15 08:02:36.014][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:02:36.015][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/cb67b3a5b745c7932ff9adec9d1972cf.content"
biodb.TRACE[2023-04-15 08:02:36.018][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/cb67b3a5b745c7932ff9adec9d1972cf.request"
biodb.TRACE[2023-04-15 08:02:36.020][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14416.1.html"
biodb.DEBUG[2023-04-15 08:02:36.021][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:02:36.022][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:02:36.023][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2023-04-15 08:02:36.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:36.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:36.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:36.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:36.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:36.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:36.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:02:36.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.045][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:36.046][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:36.047][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.047][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.048][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:36.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:36.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.051][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:36.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:36.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.054][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:36.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:36.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.060][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:36.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:36.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:36.081][self$createEntryFromContent] Accession numbers: CCDS14416.1.
biodb.TRACE[2023-04-15 08:02:36.082][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:36.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:36.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.085][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:36.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:36.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.088][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:36.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:36.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.091][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:36.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:36.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.094][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:36.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:36.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.097][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:36.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:36.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.099][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:36.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:36.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:36.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:36.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.133][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:36.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:36.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:36.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:36.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:36.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:36.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.154][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.155][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.156][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.156][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.164][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:36.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:36.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.167][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:36.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:36.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.170][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:36.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:36.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.173][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:36.174][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:36.174][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.175][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.176][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:36.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:36.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.191][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:36.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:36.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.194][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:36.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:36.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.197][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:36.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:36.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.199][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:36.200][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:36.201][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.201][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.202][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:36.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:36.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.209][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:36.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:36.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.212][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:36.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:36.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.215][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:36.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:36.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.217][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:36.218][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:36.219][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.219][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.220][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:36.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:36.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.227][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:36.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:36.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.230][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:36.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:36.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:36.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:36.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.235][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:36.236][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:36.237][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.237][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:36.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:36.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.246][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:36.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:36.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.248][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:36.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:36.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.251][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:36.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:36.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.254][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:36.255][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:36.256][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.256][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.257][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:36.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:36.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.264][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:36.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:36.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.267][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:36.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:36.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.270][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:36.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:36.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.273][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:36.274][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:36.274][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.275][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.276][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:36.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:36.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.283][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:36.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:36.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.286][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:36.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:36.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.289][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:36.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:36.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.291][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:36.292][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:36.293][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.294][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.294][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:36.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:36.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.302][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:36.303][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:36.303][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.304][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.307][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:36.308][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:36.309][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.309][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.313][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.314][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.314][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.315][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.318][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:36.319][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:36.320][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.320][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.323][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:36.324][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:36.325][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.326][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.329][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:36.330][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:36.330][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.331][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.334][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:36.335][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:36.336][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.336][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.340][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:36.340][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:36.341][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.342][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.348][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3002-content.xml".
biodb.DEBUG[2023-04-15 08:02:36.348][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:02:36.349][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2023-04-15 08:02:36.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:36.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:36.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:36.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:36.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:36.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:36.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:02:36.370][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.371][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.372][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.372][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.376][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:36.377][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:36.378][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.378][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.380][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:36.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:36.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.382][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:36.383][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:36.384][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.385][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.386][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:36.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:36.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.389][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:36.389][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:36.390][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.391][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.392][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:36.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:36.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.395][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:36.396][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:36.396][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.397][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.398][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:36.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:36.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.401][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:36.402][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:36.403][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.403][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.405][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:36.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:36.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.410][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:36.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:36.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.413][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:36.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:36.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:36.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:36.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.426][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:36.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:36.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:36.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:36.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:36.445][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3002.
biodb.TRACE[2023-04-15 08:02:36.446][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:36.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:36.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.449][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:36.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:36.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.451][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:36.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:36.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:36.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:36.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:36.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:36.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:36.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:36.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:36.459][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2023-04-15 08:02:36.460][private$loadEntries] Creating entries from ids [1]: "CCDS9633.1".
biodb.DEBUG[2023-04-15 08:02:36.488][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-15 08:02:36.499][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS9633.1".
biodb.TRACE[2023-04-15 08:02:36.500][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-04-15 08:02:36.500][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:02:36.501][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:02:36.502][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-04-15 08:02:36.503][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:02:36.503][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-04-15 08:02:36.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:36.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:36.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:36.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:36.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:36.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:36.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:36.521][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.DEBUG[2023-04-15 08:02:36.522][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:02:36.523][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:02:36.524][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.TRACE[2023-04-15 08:02:37.744][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1).
biodb.DEBUG[2023-04-15 08:02:38.947][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:02:38.949][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.content"
biodb.TRACE[2023-04-15 08:02:38.952][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.request"
biodb.TRACE[2023-04-15 08:02:38.954][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS9633.1.html"
biodb.DEBUG[2023-04-15 08:02:38.955][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:02:38.956][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:02:38.957][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2023-04-15 08:02:38.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:38.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:38.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:38.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:38.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:38.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:38.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:02:38.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:38.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:38.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:38.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:38.979][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:38.980][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:38.981][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:38.981][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:38.983][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:38.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:38.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:38.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:38.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:38.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:38.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:38.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:38.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:38.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:38.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:38.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:38.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:38.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:38.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:38.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:38.995][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:38.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:38.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:38.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:38.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:38.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:38.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:39.015][self$createEntryFromContent] Accession numbers: CCDS9633.1.
biodb.TRACE[2023-04-15 08:02:39.022][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.025][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.028][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.031][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:39.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:39.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.034][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:39.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:39.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.037][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:39.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:39.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.040][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:39.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:39.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.085][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.087][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.102][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.103][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.104][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.104][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.113][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:39.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:39.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.116][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:39.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:39.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.119][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:39.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:39.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.122][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:39.122][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:39.123][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.124][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.124][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:39.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:39.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.132][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:39.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:39.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.135][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:39.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:39.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.138][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:39.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:39.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.140][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:39.141][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:39.142][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.143][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.143][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:39.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:39.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.151][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.154][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.157][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.159][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.160][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.161][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.161][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.162][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.172][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.178][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.179][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.179][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.180][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.188][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:39.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:39.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.191][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:39.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:39.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.194][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:39.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:39.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.196][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:39.197][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:39.198][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.199][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.199][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:39.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:39.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.207][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:39.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:39.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:39.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:39.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.213][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:39.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:39.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.215][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:39.216][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:39.217][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.218][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.218][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:39.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:39.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.226][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:39.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.229][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.232][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.235][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:39.235][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.236][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.237][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.237][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:39.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.245][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.246][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.246][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.247][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.250][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:39.251][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:39.252][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.253][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.256][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.257][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.258][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.258][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.262][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:39.262][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:39.263][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.264][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.267][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:39.268][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:39.269][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.270][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.277][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:39.278][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:39.279][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.280][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.283][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.283][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.284][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.285][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.288][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.289][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.289][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.290][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.298][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3627-content.xml".
biodb.DEBUG[2023-04-15 08:02:39.299][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:02:39.299][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2023-04-15 08:02:39.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:39.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:39.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:39.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:39.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:39.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:39.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:02:39.332][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.333][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.334][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.334][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.339][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:39.340][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:39.340][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.341][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.342][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:39.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:39.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.345][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:39.346][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:39.347][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.347][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.349][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:39.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:39.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.352][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:39.352][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:39.353][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.354][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.355][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:39.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:39.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.358][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:39.359][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:39.360][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.360][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.362][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:39.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:39.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.365][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.366][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.366][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.367][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.371][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.387][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:39.407][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3627.
biodb.TRACE[2023-04-15 08:02:39.408][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.411][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.417][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:39.423][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2023-04-15 08:02:39.424][private$loadEntries] Creating entries from ids [1]: "CCDS43240.1".
biodb.DEBUG[2023-04-15 08:02:39.424][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-15 08:02:39.426][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS43240.1".
biodb.TRACE[2023-04-15 08:02:39.426][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:02:39.428][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2023-04-15 08:02:39.428][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:02:39.429][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:02:39.430][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2023-04-15 08:02:39.431][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:39.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:39.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:39.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:39.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:39.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:39.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:02:39.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.450][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:39.451][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.451][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.452][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.453][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:39.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.459][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.465][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:39.485][self$createEntryFromContent] Accession numbers: CCDS43240.1.
biodb.TRACE[2023-04-15 08:02:39.486][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.489][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.491][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.495][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:39.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:39.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.497][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:39.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:39.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.500][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:39.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:39.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.503][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:39.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:39.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.545][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.548][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.566][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.567][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.567][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.568][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.576][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:39.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:39.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.579][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:39.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:39.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.581][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:39.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:39.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.584][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:39.585][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:39.585][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.586][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.587][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:39.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:39.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.594][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:39.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:39.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.597][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:39.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:39.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.599][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:39.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:39.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.602][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:39.603][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:39.604][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.604][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.605][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:39.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:39.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.613][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.615][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.618][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.621][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.622][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.622][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.623][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.624][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.631][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.640][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.640][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.641][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.642][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.650][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:39.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:39.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.653][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:39.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:39.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.655][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:39.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:39.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.658][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:39.659][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:39.659][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.660][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.661][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:39.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:39.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.668][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:39.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:39.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.671][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:39.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:39.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.674][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:39.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:39.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.677][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:39.678][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:39.678][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.679][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.680][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:39.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:39.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.687][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:39.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.690][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.693][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.695][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:39.696][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.697][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.697][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.698][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:39.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.706][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.706][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.707][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.708][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.711][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:39.712][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:39.712][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.713][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.716][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.717][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.718][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.718][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.722][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:39.723][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:39.723][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.724][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.727][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:39.728][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:39.728][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.729][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.732][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:39.733][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:39.734][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.735][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.738][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.739][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.739][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.740][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.743][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.744][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.744][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.745][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.751][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-4316-content.xml".
biodb.DEBUG[2023-04-15 08:02:39.751][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:02:39.752][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2023-04-15 08:02:39.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:39.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:39.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:39.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:39.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:39.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:39.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:02:39.780][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.780][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.781][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.782][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.786][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:39.787][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:39.787][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.788][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.789][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:39.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:39.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.792][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:39.793][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:39.793][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.794][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.795][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:39.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:39.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.798][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:39.799][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:39.799][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.800][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.801][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:39.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:39.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.804][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:39.804][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:39.805][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.806][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.807][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:39.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:39.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.810][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.811][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.811][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.812][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.814][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:39.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.818][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.821][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:39.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:39.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:39.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:39.848][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 4316.
biodb.TRACE[2023-04-15 08:02:39.850][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.852][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:39.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:39.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:39.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:39.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:39.863][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2023-04-15 08:02:39.864][private$loadEntries] Creating entries from ids [1]: "CCDS8317.1".
biodb.DEBUG[2023-04-15 08:02:39.865][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-15 08:02:39.866][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS8317.1".
biodb.TRACE[2023-04-15 08:02:39.867][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-04-15 08:02:39.868][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:02:39.868][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:02:39.869][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-04-15 08:02:39.870][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:02:39.870][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-04-15 08:02:39.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:39.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:39.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:39.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:39.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:39.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:39.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:39.880][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.DEBUG[2023-04-15 08:02:39.882][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:02:39.883][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:02:39.884][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.TRACE[2023-04-15 08:02:41.267][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1).
biodb.DEBUG[2023-04-15 08:02:42.711][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:02:42.713][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.content"
biodb.TRACE[2023-04-15 08:02:42.716][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.request"
biodb.TRACE[2023-04-15 08:02:42.717][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS8317.1.html"
biodb.DEBUG[2023-04-15 08:02:42.719][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:02:42.720][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:02:42.721][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2023-04-15 08:02:42.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:42.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:42.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:42.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:42.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:42.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:42.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:02:42.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:42.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:42.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.742][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:42.743][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:42.744][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.745][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.746][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:42.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:42.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:42.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:42.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:42.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:42.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:42.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:42.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.757][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:42.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:42.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:42.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:42.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:42.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:42.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:42.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:42.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:42.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:42.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:42.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:42.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:42.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:42.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:42.777][self$createEntryFromContent] Accession numbers: CCDS8317.1.
biodb.TRACE[2023-04-15 08:02:42.778][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:42.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:42.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.781][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:42.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:42.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.784][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:42.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:42.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.787][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:42.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:42.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.790][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:42.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:42.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.793][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:42.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:42.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.796][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:42.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:42.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:42.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:42.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:42.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:42.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:42.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:42.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:42.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:42.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:42.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:42.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:42.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:42.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:42.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:42.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:42.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:42.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.839][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:42.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:42.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:42.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:42.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:42.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:42.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:42.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:42.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:42.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:42.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:42.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:42.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.859][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:42.860][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:42.860][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.861][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:42.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:42.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.869][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:42.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:42.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.871][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:42.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:42.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.874][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:42.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:42.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.877][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:42.878][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:42.878][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.879][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.880][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:42.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:42.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.887][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:42.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:42.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.890][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:42.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:42.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.893][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:42.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:42.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.896][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:42.896][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:42.897][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.898][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.899][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:42.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:42.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.906][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:42.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:42.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.909][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:42.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:42.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.911][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:42.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:42.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.914][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:42.915][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:42.915][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.916][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.917][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:42.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:42.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:42.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:42.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:42.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:42.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:42.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:42.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.932][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:42.933][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:42.933][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.934][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.935][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:42.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:42.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.942][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:42.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:42.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.945][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:42.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:42.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.947][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:42.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:42.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.950][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:42.951][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:42.951][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.952][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.953][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:42.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:42.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.960][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:42.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:42.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.963][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:42.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:42.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.966][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:42.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:42.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.968][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:42.969][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:42.970][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.971][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.971][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:42.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:42.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.979][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:42.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:42.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.982][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:42.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:42.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.985][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:42.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:42.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.988][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:42.989][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:42.989][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.990][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.991][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:42.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:42.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:42.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:42.998][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:42.999][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:43.000][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.000][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.004][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:43.004][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:43.005][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.006][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.009][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:43.010][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:43.011][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.011][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.015][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:43.016][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:43.016][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.017][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.020][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:43.021][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:43.022][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.022][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.026][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:43.026][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:43.027][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.028][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.031][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:43.032][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:43.033][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.033][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.036][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:43.037][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:43.038][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.038][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.048][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-50943-content.xml".
biodb.DEBUG[2023-04-15 08:02:43.049][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:02:43.050][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2023-04-15 08:02:43.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:43.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:43.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:43.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:43.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:43.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:43.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:02:43.100][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:43.101][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:43.101][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.102][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:43.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:43.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.107][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:43.108][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:43.108][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.109][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.111][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:43.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:43.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.114][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:43.115][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:43.115][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.116][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.118][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:43.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:43.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.120][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:43.121][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:43.122][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.123][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.125][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:43.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:43.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.127][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:43.128][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:43.129][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.129][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.131][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:43.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:43.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.134][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:43.135][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:43.136][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.136][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.142][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:43.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:43.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:43.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:43.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:43.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:43.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:43.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:43.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:43.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:43.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.160][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:43.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:43.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:43.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:43.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:43.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:43.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:43.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:43.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:43.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:43.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:43.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:43.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:43.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:43.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:43.180][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 50943.
biodb.TRACE[2023-04-15 08:02:43.181][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:43.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:43.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.184][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:43.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:43.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:43.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:43.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.190][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:43.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:43.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:43.192][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:43.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:43.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:43.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:43.195][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2023-04-15 08:02:43.196][private$loadEntries] Creating entries from ids [1]: "CCDS14323.1".
biodb.DEBUG[2023-04-15 08:02:43.197][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-15 08:02:43.198][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14323.1".
biodb.TRACE[2023-04-15 08:02:43.199][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-04-15 08:02:43.199][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:02:43.200][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:02:43.201][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-04-15 08:02:43.202][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:02:43.202][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-04-15 08:02:43.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:43.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:43.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:43.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:43.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:43.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:43.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:43.212][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.DEBUG[2023-04-15 08:02:43.214][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:02:43.214][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:02:43.215][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.TRACE[2023-04-15 08:02:44.433][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1).
biodb.DEBUG[2023-04-15 08:02:45.605][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:02:45.607][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.content"
biodb.TRACE[2023-04-15 08:02:45.610][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.request"
biodb.TRACE[2023-04-15 08:02:45.612][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14323.1.html"
biodb.DEBUG[2023-04-15 08:02:45.613][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:02:45.614][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:02:45.615][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2023-04-15 08:02:45.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:45.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:45.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:45.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:45.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:45.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:45.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:02:45.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:45.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:45.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.641][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:45.642][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:45.642][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.643][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.644][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:45.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:45.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:45.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:45.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.650][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:45.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:45.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:45.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:45.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.656][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:45.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:45.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:45.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:45.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:45.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:45.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:45.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:45.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:45.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:45.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:45.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:45.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:45.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:45.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:45.676][self$createEntryFromContent] Accession numbers: CCDS14323.1.
biodb.TRACE[2023-04-15 08:02:45.677][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:45.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:45.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.680][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:45.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:45.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.683][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:45.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:45.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.686][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:45.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:45.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.689][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:45.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:45.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.692][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:45.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:45.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.694][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:45.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:45.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:45.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:45.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.704][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:45.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:45.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:45.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:45.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:45.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:45.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:45.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:45.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:45.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:45.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:45.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:45.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:45.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:45.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:45.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:45.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:45.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:45.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:45.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:45.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:45.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:45.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:45.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:45.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:45.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:45.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.762][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:45.762][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:45.763][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.764][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:45.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:45.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.772][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:45.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:45.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.775][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:45.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:45.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.778][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:45.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:45.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.780][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:45.781][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:45.782][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.782][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.783][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:45.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:45.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.790][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:45.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:45.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.793][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:45.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:45.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.796][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:45.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:45.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.799][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:45.800][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:45.801][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.801][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.802][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:45.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:45.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.809][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:45.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:45.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.812][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:45.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:45.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.815][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:45.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:45.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.818][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:45.818][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:45.819][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.820][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.820][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:45.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:45.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.828][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:45.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:45.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.831][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:45.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:45.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.834][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:45.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:45.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.837][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:45.837][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:45.838][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.839][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:45.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:45.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.847][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:45.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:45.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.850][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:45.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:45.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.853][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:45.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:45.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.856][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:45.856][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:45.857][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.858][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.858][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:45.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:45.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.866][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:45.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:45.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.869][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:45.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:45.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.871][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:45.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:45.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.874][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:45.875][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:45.876][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.876][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.877][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:45.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:45.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.885][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:45.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:45.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.888][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:45.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:45.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.890][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:45.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:45.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.893][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:45.894][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:45.895][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.895][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.896][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:45.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:45.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.904][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:45.904][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:45.905][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.906][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.909][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:45.910][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:45.910][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.911][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.914][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:45.915][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:45.916][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.916][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.920][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:45.920][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:45.921][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.922][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.925][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:45.926][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:45.927][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.927][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.931][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:45.931][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:45.932][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.933][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.936][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:45.937][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:45.938][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.938][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.941][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:45.942][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:45.943][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.943][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.949][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-5551-content.xml".
biodb.DEBUG[2023-04-15 08:02:45.954][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:02:45.955][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2023-04-15 08:02:45.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:45.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:45.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:45.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:45.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:45.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:45.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:02:45.974][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:45.975][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:45.976][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.976][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:45.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:45.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.980][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:45.981][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:45.982][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.982][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.984][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:45.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:45.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.986][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:45.987][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:45.988][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.988][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.990][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:45.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:45.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.993][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:45.993][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:45.994][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.995][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.996][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:45.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:45.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:45.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:45.999][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:45.999][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:46.000][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:46.001][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:46.002][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:46.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:46.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:46.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:46.004][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:46.005][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:46.006][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:46.007][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:46.008][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:46.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:46.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:46.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:46.012][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:46.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:46.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:46.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:46.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:46.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:46.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:46.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:46.018][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:46.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:46.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:46.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:46.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:46.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:46.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:46.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:46.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:46.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:46.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:46.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:46.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:46.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:46.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:46.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:46.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:46.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:46.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:46.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:46.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:46.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:46.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:46.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:46.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:46.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:46.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:46.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:46.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:46.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:46.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:46.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:46.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:46.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:46.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:46.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:46.043][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 5551.
biodb.TRACE[2023-04-15 08:02:46.045][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:46.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:46.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:46.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:46.048][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:46.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:46.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:46.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:46.051][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:46.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:46.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:46.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:46.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:46.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:46.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:46.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:46.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:46.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:46.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:46.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:46.059][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2023-04-15 08:02:46.060][private$loadEntries] Creating entries from ids [1]: "CCDS7305.1".
biodb.DEBUG[2023-04-15 08:02:46.061][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-15 08:02:46.062][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS7305.1".
biodb.TRACE[2023-04-15 08:02:46.063][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-04-15 08:02:46.063][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:02:46.064][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:02:46.065][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-04-15 08:02:46.066][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:02:46.066][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-04-15 08:02:46.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:46.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:46.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:46.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:46.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:46.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:46.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:46.076][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.DEBUG[2023-04-15 08:02:46.078][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:02:46.079][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:02:46.080][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.TRACE[2023-04-15 08:02:47.288][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1).
biodb.DEBUG[2023-04-15 08:02:48.525][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:02:48.527][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.content"
biodb.TRACE[2023-04-15 08:02:48.530][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.request"
biodb.TRACE[2023-04-15 08:02:48.532][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS7305.1.html"
biodb.DEBUG[2023-04-15 08:02:48.533][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:02:48.534][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:02:48.535][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2023-04-15 08:02:48.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:48.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:48.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:48.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:48.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:48.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:48.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:02:48.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.559][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:48.559][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:48.560][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.561][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.562][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:48.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:48.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:48.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:48.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.567][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:48.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:48.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:48.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:48.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:48.593][self$createEntryFromContent] Accession numbers: CCDS7305.1.
biodb.TRACE[2023-04-15 08:02:48.593][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:48.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:48.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.596][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:48.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:48.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.599][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:48.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:48.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.602][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:48.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:48.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.605][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:48.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:48.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.607][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:48.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:48.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.610][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:48.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:48.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.619][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:48.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:48.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.653][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:48.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:48.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.656][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:48.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:48.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:48.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:48.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.673][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.674][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.674][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.675][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.683][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:48.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:48.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.685][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:48.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:48.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.688][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:48.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:48.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.691][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:48.691][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:48.692][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.693][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.693][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:48.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:48.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.701][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:48.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:48.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.704][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:48.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:48.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.707][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:48.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:48.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.710][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:48.710][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:48.711][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.712][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.712][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:48.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:48.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.720][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:48.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:48.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.722][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:48.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:48.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.725][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:48.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:48.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.728][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:48.728][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:48.729][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.730][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.731][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:48.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:48.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.737][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:48.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:48.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.740][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:48.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:48.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:48.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:48.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.746][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:48.746][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:48.747][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.748][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:48.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:48.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.756][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:48.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:48.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.758][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:48.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:48.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.761][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:48.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:48.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.764][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:48.765][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:48.765][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.766][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.767][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:48.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:48.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.774][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:48.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:48.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.777][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:48.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:48.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.779][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:48.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:48.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.782][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:48.783][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:48.784][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.784][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.785][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:48.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:48.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.792][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:48.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:48.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.795][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:48.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:48.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.798][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:48.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:48.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.801][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:48.802][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:48.802][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.803][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.804][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:48.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:48.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.811][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:48.812][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:48.812][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.813][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.816][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:48.817][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:48.818][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.819][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.822][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.823][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.824][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.824][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.827][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:48.828][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:48.829][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.830][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.833][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:48.834][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:48.834][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.835][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.838][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:48.839][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:48.840][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.840][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.844][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:48.844][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:48.845][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.846][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.850][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:48.850][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:48.851][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.852][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.861][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-916-content.xml".
biodb.DEBUG[2023-04-15 08:02:48.862][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:02:48.863][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2023-04-15 08:02:48.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:48.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:48.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:48.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:48.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:48.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:48.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:02:48.880][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.881][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.882][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.882][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.886][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:48.887][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:48.888][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.888][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.889][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:48.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:48.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.892][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:48.893][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:48.893][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.894][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.895][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:48.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:48.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.898][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:48.899][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:48.899][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.900][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.901][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:48.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:48.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.904][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:48.904][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:48.905][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.906][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.907][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:48.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:48.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.909][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:48.910][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:48.911][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.911][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.913][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:48.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:48.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:48.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:48.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.920][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:48.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:48.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:48.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:48.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.928][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:48.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:48.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:48.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:48.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:48.947][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 916.
biodb.TRACE[2023-04-15 08:02:48.949][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:48.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:48.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.952][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:48.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:48.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.954][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:48.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:48.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.957][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:48.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:48.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:48.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:48.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:48.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:48.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:48.963][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2023-04-15 08:02:48.963][private$loadEntries] Creating entries from ids [1]: "CCDS31685.1".
biodb.DEBUG[2023-04-15 08:02:48.964][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-15 08:02:48.965][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS31685.1".
biodb.TRACE[2023-04-15 08:02:48.966][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-04-15 08:02:48.967][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:02:48.968][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:02:48.968][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-04-15 08:02:48.969][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:02:48.970][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2023-04-15 08:02:48.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:48.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:48.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:48.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:48.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:48.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:48.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:02:48.980][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.DEBUG[2023-04-15 08:02:48.982][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:02:48.982][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:02:48.983][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.TRACE[2023-04-15 08:02:50.165][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1).
biodb.DEBUG[2023-04-15 08:02:51.339][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:02:51.340][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.content"
biodb.TRACE[2023-04-15 08:02:51.343][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.request"
biodb.TRACE[2023-04-15 08:02:51.345][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS31685.1.html"
biodb.DEBUG[2023-04-15 08:02:51.347][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:02:51.347][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:02:51.348][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2023-04-15 08:02:51.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:51.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:51.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:51.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:51.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:51.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:51.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:02:51.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.371][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:51.371][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:51.372][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.373][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.374][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:51.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:51.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:51.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:51.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:51.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:51.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.385][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:51.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:51.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:51.405][self$createEntryFromContent] Accession numbers: CCDS31685.1.
biodb.TRACE[2023-04-15 08:02:51.406][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:51.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:51.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.409][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:51.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:51.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.412][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:51.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:51.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.415][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:51.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:51.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.417][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:51.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:51.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.420][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:51.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:51.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.423][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:51.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:51.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.433][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:51.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:51.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.465][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:51.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:51.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:51.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:51.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.470][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:51.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:51.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.485][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.486][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.487][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.487][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.495][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:51.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:51.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.498][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:51.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:51.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.501][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:51.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:51.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.503][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:51.504][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:51.505][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.505][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.506][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:51.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:51.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.513][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:51.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:51.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.516][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:51.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:51.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.519][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:51.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:51.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.522][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:51.523][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:51.524][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.524][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.525][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:51.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:51.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.533][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:51.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:51.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.536][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:51.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:51.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.539][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:51.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:51.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.541][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:51.542][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:51.543][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.544][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.544][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:51.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:51.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:51.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:51.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:51.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:51.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.558][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:51.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:51.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.561][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:51.562][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:51.562][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.563][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:51.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:51.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.571][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:51.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:51.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.574][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:51.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:51.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.577][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:51.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:51.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.580][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:51.581][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:51.581][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.582][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.583][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:51.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:51.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.590][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:51.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:51.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.593][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:51.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:51.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.596][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:51.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:51.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.599][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:51.599][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:51.600][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.601][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.602][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:51.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:51.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.609][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:51.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:51.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.612][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:51.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:51.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.615][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:51.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:51.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.618][ef$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:51.618][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:51.619][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.620][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.621][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2023-04-15 08:02:51.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:51.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.628][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:51.629][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:51.630][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.630][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.634][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:51.635][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:51.635][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.636][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.639][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.640][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.641][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.641][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.645][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:51.646][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:51.646][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.647][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.651][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:51.651][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:51.652][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.653][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.656][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:51.657][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:51.657][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.658][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.662][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:51.662][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:51.663][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.664][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.667][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:51.668][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:51.668][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.674][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.677][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-9606-content.xml".
biodb.DEBUG[2023-04-15 08:02:51.678][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:02:51.679][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2023-04-15 08:02:51.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:51.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:51.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:51.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:51.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:51.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:51.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:02:51.688][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.689][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.690][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.690][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.694][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:51.695][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:51.696][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.696][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.697][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:51.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:51.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.700][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:51.701][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:51.701][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.702][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.703][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:51.703][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:51.704][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.705][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.705][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:51.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:51.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.708][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:51.709][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:51.710][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.710][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.711][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:51.712][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:51.713][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.713][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:51.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:51.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:51.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:51.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:51.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:51.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:51.743][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 9606.
biodb.TRACE[2023-04-15 08:02:51.745][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:51.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:51.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.747][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:51.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:51.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.750][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:51.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:51.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.753][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:51.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:51.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.756][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:51.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:51.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.759][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:51.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:51.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.761][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:51.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:51.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.771][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:51.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:51.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.794][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:51.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:51.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.797][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:51.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:51.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.800][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:51.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:51.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.816][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.817][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.817][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.818][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.826][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:51.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:51.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.829][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:51.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:51.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.832][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:51.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:51.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.835][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:51.836][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:51.837][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.837][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.838][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:51.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:51.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.846][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:51.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:51.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.849][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:51.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:51.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.851][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:51.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:51.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.854][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:51.855][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:51.856][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.856][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.857][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:51.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:51.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.864][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:51.865][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:51.866][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.866][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.870][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:51.870][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:51.871][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.872][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:51.875][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:51.876][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:51.876][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:51.877][ef$get] fields variable is a list.
biodb.INFO [2023-04-15 08:02:51.881][biodb::testThat]
biodb.INFO [2023-04-15 08:02:51.881][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2023-04-15 08:02:51.882][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:02:51.883][biodb::testThat]
biodb.DEBUG[2023-04-15 08:02:51.885][private$loadEntries] Creating entries from ids [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.DEBUG[2023-04-15 08:02:51.885][conn$getEntryContent] Get NCBI Gene entry content(s) for 8 id(s)...
biodb.TRACE[2023-04-15 08:02:51.886][cch$loadFileContent] Trying to load 8 files from cache: [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.INFO [2023-04-15 08:02:51.888][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8" for "ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8".
biodb.TRACE[2023-04-15 08:02:51.889][cch$loadFileContent] file.exist = [8]: "FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE".
biodb.TRACE[2023-04-15 08:02:51.890][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:02:51.891][conn$getEntryContent] 0 NCBI Gene entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:02:51.896][conn$getEntryContent] 8 entry content(s) need to be fetched from NCBI Gene database "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:02:51.897][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:02:51.898][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-04-15 08:02:51.899][private$retrieveContents] Get entry content(s) for 8 id(s)...
biodb.DEBUG[2023-04-15 08:02:51.922][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml".
biodb.DEBUG[2023-04-15 08:02:51.923][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:02:51.924][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:02:51.925][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml".
biodb.TRACE[2023-04-15 08:02:52.090][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml does not exist.
biodb.TRACE[2023-04-15 08:02:52.091][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:02:52.091][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:02:52.092][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml).
biodb.TRACE[2023-04-15 08:02:53.799][private$doSaveContentToFile] Saving to cache [8]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/2833.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3002.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3627.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/4316.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/50943.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/5551.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/916.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/9606.xml"
biodb.DEBUG[2023-04-15 08:02:53.827][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:02:53.828][self$createEntryFromContent] Creating NCBI Gene entries from 8 content(s).
biodb.DEBUG[2023-04-15 08:02:53.829][self$createEntryFromContent] Parsing 8 NCBI Gene entries.
biodb.DEBUG[2023-04-15 08:02:53.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:53.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:53.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:53.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:53.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:53.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:53.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:02:53.851][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:53.852][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:53.853][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.853][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:53.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:53.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.857][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:53.858][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:53.859][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.859][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.861][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:53.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:53.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.864][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:53.864][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:53.865][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.866][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.867][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:53.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:53.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.870][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:53.870][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:53.871][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.872][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.873][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:53.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:53.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.876][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:53.877][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:53.877][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.878][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.879][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:53.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:53.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.882][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:53.883][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:53.883][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.884][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.886][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:53.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:53.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.891][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:53.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:53.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.894][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:53.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:53.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:53.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:53.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:53.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:53.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.902][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:53.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:53.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:53.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:53.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:53.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:53.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:53.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:53.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:53.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:53.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:53.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:53.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:53.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:53.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:53.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:02:53.935][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:53.936][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:53.937][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.938][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:53.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:53.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.942][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:53.943][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:53.943][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.944][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.945][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:53.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:53.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.948][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:53.949][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:53.950][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.950][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.952][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:53.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:53.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.955][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:53.955][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:53.956][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.957][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.958][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:53.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:53.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.961][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:53.962][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:53.962][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.963][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.964][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:53.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:53.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.967][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:53.968][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:53.969][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.970][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.972][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:53.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:53.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:53.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:53.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:53.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:53.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:53.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:53.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:53.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:53.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:53.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:53.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:53.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:53.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:53.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:53.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:53.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:53.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:53.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:53.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:54.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:54.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:54.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:54.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:54.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:54.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:54.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:02:54.031][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.032][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.033][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.034][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.038][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:54.039][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:54.039][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.040][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.042][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:54.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:54.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.045][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:54.045][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:54.046][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.047][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.048][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:54.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:54.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.051][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:54.052][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:54.053][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.053][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.055][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:54.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:54.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.058][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:54.059][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:54.059][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.060][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.062][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:54.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:54.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.065][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:54.065][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:54.066][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.067][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.069][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:54.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:54.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:54.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:54.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.115][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:54.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:54.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:54.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:54.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:54.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:54.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:54.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:02:54.148][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.149][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.150][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.150][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.154][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:54.155][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:54.156][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.156][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.158][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:54.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:54.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.160][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:54.161][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:54.162][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.162][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.164][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:54.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:54.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.166][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:54.167][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:54.168][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.168][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.170][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:54.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:54.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.172][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:54.173][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:54.174][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.174][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.176][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:54.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:54.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.179][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:54.179][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:54.180][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.181][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.183][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:54.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:54.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:54.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:54.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.190][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.192][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.198][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:54.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:54.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:54.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:54.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:54.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:54.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:54.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:02:54.252][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.253][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.253][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.254][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.259][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:54.259][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:54.260][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.261][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.263][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:54.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:54.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.266][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:54.266][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:54.267][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.268][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.270][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:54.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:54.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.272][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:54.273][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:54.274][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.274][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.276][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:54.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:54.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.279][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:54.280][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:54.281][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.281][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.283][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:54.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:54.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.286][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:54.287][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:54.287][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.288][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.293][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:54.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:54.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.299][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:54.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:54.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.302][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:54.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:54.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:54.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:54.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:54.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:54.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:54.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:02:54.339][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.340][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.341][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.341][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.345][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:54.346][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:54.347][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.347][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.348][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:54.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:54.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.351][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:54.352][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:54.353][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.353][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.354][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:54.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:54.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.357][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:54.358][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:54.359][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.359][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.360][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:54.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:54.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.363][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:54.364][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:54.365][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.365][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.366][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:54.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:54.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.369][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:54.370][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:54.371][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.371][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.373][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:54.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:54.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:54.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:54.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:54.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:54.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:54.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:54.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:54.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:54.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:54.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:02:54.431][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.432][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.432][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.433][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.437][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:54.438][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:54.438][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.439][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.440][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:54.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:54.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.443][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:54.443][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:54.444][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.445][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.446][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:54.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:54.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.449][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:54.450][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:54.450][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.451][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.452][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:54.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:54.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.455][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:54.455][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:54.456][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.457][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.458][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:54.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:54.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.461][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:54.462][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:54.462][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.463][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.465][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:54.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:54.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.469][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:54.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:54.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.480][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:54.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:02:54.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:02:54.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:02:54.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:02:54.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:02:54.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:02:54.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:02:54.500][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.501][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.501][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.502][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.506][ef$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:54.506][ef$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:54.507][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.508][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.508][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2023-04-15 08:02:54.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2023-04-15 08:02:54.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.511][ef$get] Asked field names are: location.
biodb.TRACE[2023-04-15 08:02:54.512][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2023-04-15 08:02:54.513][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.513][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.514][ef$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:54.515][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:54.515][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.516][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.517][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2023-04-15 08:02:54.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2023-04-15 08:02:54.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.520][ef$get] Asked field names are: synonyms.
biodb.TRACE[2023-04-15 08:02:54.521][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:54.521][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.522][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.523][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:54.523][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2023-04-15 08:02:54.524][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.525][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.526][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2023-04-15 08:02:54.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:02:54.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:02:54.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:54.611][self$createEntryFromContent] Accession numbers: 2833, 3002, 3627, 4316, 50943, 5551, 916, 9606.
biodb.TRACE[2023-04-15 08:02:54.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-04-15 08:02:54.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-04-15 08:02:54.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:02:54.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:02:54.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:02:54.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:02:54.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-04-15 08:02:54.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-04-15 08:02:54.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:02:54.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:02:54.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:02:54.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:02:54.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-04-15 08:02:54.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-04-15 08:02:54.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:02:54.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:02:54.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:02:54.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:02:54.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-04-15 08:02:54.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-04-15 08:02:54.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:02:54.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:02:54.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:02:54.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:02:54.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-04-15 08:02:54.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-04-15 08:02:54.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:02:54.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:02:54.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:02:54.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:02:54.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-04-15 08:02:54.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-04-15 08:02:54.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:02:54.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:02:54.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:02:54.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:02:54.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-04-15 08:02:54.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-04-15 08:02:54.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:02:54.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:02:54.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:02:54.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:02:54.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-04-15 08:02:54.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-04-15 08:02:54.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:02:54.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:02:54.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:02:54.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:02:54.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-15 08:02:54.706][biodb::testThat]
biodb.INFO [2023-04-15 08:02:54.706][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2023-04-15 08:02:54.707][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:02:54.708][biodb::testThat]
biodb.TRACE[2023-04-15 08:02:54.710][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:54.710][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:54.711][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.712][ef$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:54.713][function(conn, opt)] Testing searchForEntries() with entry "2833" and field "name".
biodb.TRACE[2023-04-15 08:02:54.721][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:54.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:54.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.724][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:54.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:54.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.726][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:54.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:54.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:54.730][function(conn, opt)] With value "GPR9".
biodb.DEBUG[2023-04-15 08:02:54.752][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2023-04-15 08:02:54.754][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:02:54.755][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:02:54.756][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1".
biodb.TRACE[2023-04-15 08:02:54.833][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1 does not exist.
biodb.TRACE[2023-04-15 08:02:54.834][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:02:54.835][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:02:54.836][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1).
biodb.DEBUG[2023-04-15 08:02:54.924][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:02:54.926][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content"
biodb.TRACE[2023-04-15 08:02:54.928][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.request"
biodb.DEBUG[2023-04-15 08:02:54.930][function(conn, opt)] With found IDs [1]: "2833".
biodb.INFO [2023-04-15 08:02:54.939][biodb::testThat]
biodb.INFO [2023-04-15 08:02:54.940][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2023-04-15 08:02:54.941][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:02:54.942][biodb::testThat]
biodb.TRACE[2023-04-15 08:02:54.949][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:54.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:54.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.952][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:54.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:54.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:54.955][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:02:54.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:02:54.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:54.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:54.979][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2023-04-15 08:02:54.981][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:02:54.982][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2023-04-15 08:02:54.983][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:02:54.984][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.INFO [2023-04-15 08:02:54.994][biodb::testThat]
biodb.INFO [2023-04-15 08:02:54.995][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2023-04-15 08:02:54.995][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:02:54.996][biodb::testThat]
biodb.TRACE[2023-04-15 08:02:55.009][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:55.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:55.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:55.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:55.012][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:55.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:55.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:55.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:55.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:55.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:55.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:55.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:55.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:55.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:55.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:55.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:55.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:55.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:02:55.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:55.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:02:55.023][private$computeField] Compute value for field "aa.seq".
biodb.TRACE[2023-04-15 08:02:55.023][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:55.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:55.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:55.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:55.026][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:55.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:55.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:55.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:55.029][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:55.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:55.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:55.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:55.032][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:55.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:55.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:55.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:55.034][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:55.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:55.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:55.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:55.037][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:55.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:55.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:55.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:55.040][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:55.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:55.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:55.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:55.044][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:55.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:55.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:55.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:55.046][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:02:55.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:02:55.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:55.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:55.049][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:55.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:55.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:55.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:55.052][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:02:55.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:02:55.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:55.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:55.055][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:55.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:02:55.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:55.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:02:55.057][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:55.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:02:55.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:02:55.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-15 08:02:55.063][biodb::testThat]
biodb.INFO [2023-04-15 08:02:55.064][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2023-04-15 08:02:55.065][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:02:55.065][biodb::testThat]
biodb.INFO [2023-04-15 08:02:55.071][biodb::testThat]
biodb.INFO [2023-04-15 08:02:55.072][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2023-04-15 08:02:55.073][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:02:55.074][biodb::testThat]
biodb.INFO [2023-04-15 08:02:55.077][biodb::testThat]
biodb.INFO [2023-04-15 08:02:55.077][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2023-04-15 08:02:55.078][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:02:55.079][biodb::testThat]
biodb.DEBUG[2023-04-15 08:02:55.081][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/gene?term=2833".
biodb.DEBUG[2023-04-15 08:02:57.665][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/gene?term=2833.
biodb.INFO [2023-04-15 08:03:00.314][biodb::testThat]
biodb.INFO [2023-04-15 08:03:00.314][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2023-04-15 08:03:00.315][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:03:00.316][biodb::testThat]
biodb.INFO [2023-04-15 08:03:00.318][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-04-15 08:03:00.319][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.gene from the request scheduler
biodb.INFO [2023-04-15 08:03:00.320][self$deleteConn] Connector "ncbi.gene" deleted.
biodb.DEBUG[2023-04-15 08:03:00.321][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2023-04-15 08:03:00.326][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2023-04-15 08:03:00.326][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-04-15 08:03:00.327][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:00.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:00.328][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.329][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-04-15 08:03:00.333][biodb::testContext]
biodb.INFO [2023-04-15 08:03:00.334][biodb::testContext] ********************************************************************************
biodb.INFO [2023-04-15 08:03:00.334][biodb::testContext] Test context - Pubchem comp long tests
biodb.INFO [2023-04-15 08:03:00.335][biodb::testContext] ********************************************************************************
biodb.INFO [2023-04-15 08:03:00.336][biodb::testContext]
biodb.INFO [2023-04-15 08:03:00.337][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.6.1.
biodb.DEBUG[2023-04-15 08:03:00.338][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.2/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2023-04-15 08:03:00.341][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-15 08:03:00.342][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-04-15 08:03:00.343][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-04-15 08:03:00.343][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.345][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-04-15 08:03:00.346][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-04-15 08:03:00.347][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.349][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-04-15 08:03:00.350][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-04-15 08:03:00.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.352][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-04-15 08:03:00.353][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-04-15 08:03:00.354][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-04-15 08:03:00.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.356][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-04-15 08:03:00.357][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-04-15 08:03:00.358][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-04-15 08:03:00.358][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.360][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-04-15 08:03:00.361][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-04-15 08:03:00.362][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.364][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-04-15 08:03:00.364][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-04-15 08:03:00.365][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-04-15 08:03:00.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.368][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-04-15 08:03:00.368][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-04-15 08:03:00.369][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.371][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-04-15 08:03:00.372][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-04-15 08:03:00.372][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-04-15 08:03:00.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.375][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-04-15 08:03:00.376][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-04-15 08:03:00.376][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-04-15 08:03:00.377][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-04-15 08:03:00.378][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-04-15 08:03:00.379][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-04-15 08:03:00.379][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.381][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-04-15 08:03:00.382][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-04-15 08:03:00.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.385][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-04-15 08:03:00.385][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-04-15 08:03:00.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.388][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-04-15 08:03:00.389][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-04-15 08:03:00.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.391][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-04-15 08:03:00.392][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-04-15 08:03:00.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.395][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-04-15 08:03:00.395][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-04-15 08:03:00.396][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.398][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-04-15 08:03:00.399][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-04-15 08:03:00.413][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-04-15 08:03:00.413][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.416][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-04-15 08:03:00.416][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-04-15 08:03:00.417][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-04-15 08:03:00.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.420][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-04-15 08:03:00.421][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:00.422][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-04-15 08:03:00.423][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.423][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:03:00.424][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.425][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:03:00.425][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:00.426][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:03:00.427][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-04-15 08:03:00.428][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:03:00.428][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.429][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-04-15 08:03:00.430][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:03:00.430][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:00.431][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.432][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:03:00.432][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-15 08:03:00.432][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-15 08:03:00.432][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-04-15 08:03:00.432][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-04-15 08:03:00.433][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:03:00.433][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:00.434][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:00.435][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:03:00.435][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:00.436][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:00.437][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:03:00.438][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:00.438][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:03:00.439][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:03:00.440][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:00.440][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:00.441][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-04-15 08:03:00.442][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:00.443][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-04-15 08:03:00.444][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.445][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:03:00.445][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.446][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:03:00.447][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:00.447][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:03:00.448][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-04-15 08:03:00.449][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:03:00.450][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.450][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-04-15 08:03:00.451][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:03:00.452][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:00.452][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.453][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:03:00.453][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-15 08:03:00.453][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-15 08:03:00.453][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-04-15 08:03:00.453][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-04-15 08:03:00.454][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:03:00.455][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:00.455][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:00.456][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:03:00.457][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:00.457][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:00.458][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:03:00.459][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:00.459][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:03:00.460][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:03:00.475][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:00.484][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:00.485][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-04-15 08:03:00.487][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.488][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-04-15 08:03:00.488][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.489][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:03:00.490][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.490][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:03:00.491][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:00.492][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:03:00.492][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-04-15 08:03:00.493][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:03:00.494][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:00.494][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-04-15 08:03:00.495][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:03:00.496][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:00.497][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.497][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:00.498][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:03:00.499][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:00.500][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:00.500][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:03:00.501][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:00.502][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:00.502][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:03:00.503][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:00.504][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:03:00.504][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:03:00.505][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:00.506][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:00.507][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-04-15 08:03:00.508][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.509][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-04-15 08:03:00.510][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.510][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:03:00.511][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.512][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:03:00.513][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:00.514][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:03:00.514][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-04-15 08:03:00.515][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:03:00.516][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:00.516][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-04-15 08:03:00.517][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:03:00.518][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:00.519][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.520][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:00.520][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:03:00.521][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:00.521][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:00.522][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:03:00.523][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:00.523][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:00.524][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:03:00.525][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:00.525][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:03:00.526][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:03:00.527][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:00.527][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:00.528][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-15 08:03:00.529][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.530][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.536][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.539][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.542][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.549][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.552][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.555][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.561][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.568][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.577][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.583][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-04-15 08:03:00.584][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-04-15 08:03:00.586][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-04-15 08:03:00.587][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-04-15 08:03:00.588][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-04-15 08:03:00.589][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-04-15 08:03:00.590][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-04-15 08:03:00.591][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-04-15 08:03:00.591][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-04-15 08:03:00.592][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-04-15 08:03:00.593][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-04-15 08:03:00.594][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-04-15 08:03:00.595][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-04-15 08:03:00.596][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-04-15 08:03:00.597][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-04-15 08:03:00.598][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-04-15 08:03:00.599][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-04-15 08:03:00.600][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-04-15 08:03:00.601][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-04-15 08:03:00.602][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-04-15 08:03:00.603][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-04-15 08:03:00.604][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-04-15 08:03:00.605][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-04-15 08:03:00.606][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-04-15 08:03:00.607][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-04-15 08:03:00.608][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-04-15 08:03:00.609][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-04-15 08:03:00.610][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-04-15 08:03:00.611][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-04-15 08:03:00.612][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-04-15 08:03:00.613][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-04-15 08:03:00.614][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-04-15 08:03:00.615][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-04-15 08:03:00.616][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-04-15 08:03:00.617][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-04-15 08:03:00.618][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-04-15 08:03:00.619][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-04-15 08:03:00.620][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-04-15 08:03:00.621][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-04-15 08:03:00.622][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-04-15 08:03:00.623][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-04-15 08:03:00.624][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-04-15 08:03:00.624][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-04-15 08:03:00.625][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-04-15 08:03:00.626][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-04-15 08:03:00.627][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-04-15 08:03:00.628][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-04-15 08:03:00.629][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-04-15 08:03:00.630][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-04-15 08:03:00.631][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-04-15 08:03:00.632][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-04-15 08:03:00.633][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-04-15 08:03:00.634][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-04-15 08:03:00.635][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-04-15 08:03:00.636][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-04-15 08:03:00.637][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-04-15 08:03:00.638][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-04-15 08:03:00.639][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-04-15 08:03:00.640][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-04-15 08:03:00.641][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-04-15 08:03:00.642][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-04-15 08:03:00.643][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-04-15 08:03:00.644][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-04-15 08:03:00.645][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-04-15 08:03:00.646][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-04-15 08:03:00.647][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-04-15 08:03:00.648][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-04-15 08:03:00.649][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-04-15 08:03:00.650][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-04-15 08:03:00.651][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-04-15 08:03:00.652][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-04-15 08:03:00.653][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-04-15 08:03:00.654][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-04-15 08:03:00.655][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-04-15 08:03:00.656][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-04-15 08:03:00.657][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-04-15 08:03:00.658][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-04-15 08:03:00.659][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-04-15 08:03:00.660][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-04-15 08:03:00.661][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-04-15 08:03:00.662][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-04-15 08:03:00.663][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-04-15 08:03:00.664][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-04-15 08:03:00.665][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-04-15 08:03:00.666][initialize] This is biodb version 1.6.1.
biodb.DEBUG[2023-04-15 08:03:00.667][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-15 08:03:00.668][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.669][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:00.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:00.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.675][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:00.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:00.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.680][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:00.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:00.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.685][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:00.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:00.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:00.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:00.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.695][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:00.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:00.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.706][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:00.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:00.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:00.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:00.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:00.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:00.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.720][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:00.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:00.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.725][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:00.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:00.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.729][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:00.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:00.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.734][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:00.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:00.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.738][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:00.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:00.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.743][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:00.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:00.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:00.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:00.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:00.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:00.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:00.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:00.758][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2023-04-15 08:03:00.759][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2023-04-15 08:03:00.761][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.762][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2023-04-15 08:03:00.762][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.763][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:03:00.764][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.765][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:03:00.765][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.766][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:03:00.767][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2023-04-15 08:03:00.768][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:03:00.769][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.769][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2023-04-15 08:03:00.770][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:03:00.771][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2023-04-15 08:03:00.771][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2023-04-15 08:03:00.772][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:00.772][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:00.773][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-04-15 08:03:00.774][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:00.775][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:00.775][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:03:00.776][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:00.777][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:00.777][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:03:00.778][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-04-15 08:03:00.778][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2023-04-15 08:03:00.779][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:03:00.780][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:03:00.780][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.781][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:00.782][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2023-04-15 08:03:00.783][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.784][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2023-04-15 08:03:00.785][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.786][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:03:00.786][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.787][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:03:00.788][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.788][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:03:00.789][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-15 08:03:00.790][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:03:00.791][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.791][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2023-04-15 08:03:00.792][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:03:00.793][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2023-04-15 08:03:00.793][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2023-04-15 08:03:00.793][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2023-04-15 08:03:00.793][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2023-04-15 08:03:00.793][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2023-04-15 08:03:00.793][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2023-04-15 08:03:00.794][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:00.794][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:03:00.795][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-04-15 08:03:00.796][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:00.797][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:00.798][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:03:00.798][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:00.799][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:00.800][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:03:00.800][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:03:00.800][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-04-15 08:03:00.801][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:03:00.802][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:03:00.803][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.803][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:00.804][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2023-04-15 08:03:00.806][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:00.806][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2023-04-15 08:03:00.807][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.808][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:03:00.809][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.809][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:03:00.810][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.811][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:03:00.812][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-15 08:03:00.812][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:03:00.813][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.814][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2023-04-15 08:03:00.815][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:03:00.815][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2023-04-15 08:03:00.815][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:03:00.815][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:03:00.815][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:03:00.815][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:03:00.815][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:03:00.815][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:03:00.815][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:03:00.815][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:03:00.815][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:03:00.815][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2023-04-15 08:03:00.815][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:03:00.815][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:03:00.815][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:03:00.816][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:00.817][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:03:00.817][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-15 08:03:00.817][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-15 08:03:00.818][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2023-04-15 08:03:00.819][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:00.819][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:00.820][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:03:00.821][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:00.821][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:00.822][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:03:00.823][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:03:00.823][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-04-15 08:03:00.823][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2023-04-15 08:03:00.823][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:03:00.824][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:03:00.825][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.826][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-04-15 08:03:00.826][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2023-04-15 08:03:00.828][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.829][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2023-04-15 08:03:00.829][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.830][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:03:00.831][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.831][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:03:00.832][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.833][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:03:00.834][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-15 08:03:00.834][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:03:00.835][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.836][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2023-04-15 08:03:00.837][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:03:00.837][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2023-04-15 08:03:00.837][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2023-04-15 08:03:00.838][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:00.839][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:00.840][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2023-04-15 08:03:00.840][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:00.841][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:00.842][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:03:00.842][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:00.843][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:00.844][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:03:00.844][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:03:00.844][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-04-15 08:03:00.844][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2023-04-15 08:03:00.845][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:03:00.846][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:03:00.847][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:00.847][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-04-15 08:03:00.848][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2023-04-15 08:03:00.849][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-04-15 08:03:00.851][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-04-15 08:03:00.852][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2023-04-15 08:03:00.853][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-04-15 08:03:00.854][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2023-04-15 08:03:00.860][super$initialize] Initialize connector ncbi.pubchem.comp.
biodb.DEBUG[2023-04-15 08:03:00.861][super$initialize] Register connector ncbi.pubchem.comp with the request scheduler
biodb.DEBUG[2023-04-15 08:03:00.862][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.comp.
biodb.DEBUG[2023-04-15 08:03:00.863][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2023-04-15 08:03:00.864][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2023-04-15 08:03:00.865][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2023-04-15 08:03:00.866][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2023-04-15 08:03:00.867][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2023-04-15 08:03:00.867][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2023-04-15 08:03:00.868][rule$addConnector] Connector "ncbi.pubchem.comp" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-04-15 08:03:00.882][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.comp for database class ncbi.pubchem.comp .
biodb.INFO [2023-04-15 08:03:00.885][biodb::testThat]
biodb.INFO [2023-04-15 08:03:00.886][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2023-04-15 08:03:00.886][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:03:00.887][biodb::testThat]
biodb.TRACE[2023-04-15 08:03:00.890][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-2-content.xml".
biodb.DEBUG[2023-04-15 08:03:00.890][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:03:00.893][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:03:00.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:00.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:00.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:00.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:00.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:00.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:00.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:00.905][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:00.905][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:00.906][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.907][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:00.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:00.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.911][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:00.912][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:00.912][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.913][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:00.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:00.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.917][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:00.918][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:00.918][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.919][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.920][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:00.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:00.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.923][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:00.924][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:00.924][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.925][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:00.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:00.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.929][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:00.930][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:00.931][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.931][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:00.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:00.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.942][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:00.943][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:00.943][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.944][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:00.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:00.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.948][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:00.948][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:00.949][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.950][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.951][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:00.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:00.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.953][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:00.954][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:00.955][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.955][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.956][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:00.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:00.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.959][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:00.960][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:00.961][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.961][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:00.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:00.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.965][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:00.966][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:00.967][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.967][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:00.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:00.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.971][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:00.972][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:00.973][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.973][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.974][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:00.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:00.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.977][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:00.978][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:00.979][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.979][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:00.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:00.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.983][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:00.984][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:00.984][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.985][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.986][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:00.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:00.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.989][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:00.990][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:00.990][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.991][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.992][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:00.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:00.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.995][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:00.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:00.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:00.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:00.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:00.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:00.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.004][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:01.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.012][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:01.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:01.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.015][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:01.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:01.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:01.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:01.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.021][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:01.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.029][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:01.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.038][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:01.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:01.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.041][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:01.071][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2.
biodb.TRACE[2023-04-15 08:03:01.072][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:03:01.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:03:01.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.075][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:03:01.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:03:01.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.078][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:03:01.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:03:01.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.081][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:03:01.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:03:01.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.084][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:03:01.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:03:01.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.087][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:03:01.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:03:01.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.090][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:03:01.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:03:01.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.100][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.125][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.128][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.146][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.147][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.148][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.149][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.162][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:01.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:01.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:01.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:01.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:01.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:01.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.171][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:01.172][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:01.172][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.173][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.174][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:01.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:01.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:01.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:01.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:01.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:01.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:01.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:01.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.190][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:01.190][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:01.191][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.192][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:01.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:01.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.200][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:01.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:01.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.203][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:01.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:01.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.206][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:01.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:01.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.208][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:01.209][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:01.210][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.211][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:01.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:01.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.219][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:01.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:01.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.222][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:01.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:01.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.225][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:01.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:01.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.228][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:01.228][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:01.229][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.230][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.230][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:01.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:01.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.238][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:01.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:01.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.240][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:01.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:01.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.243][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:01.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:01.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.246][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:01.247][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:01.247][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.248][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.249][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:01.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:01.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.256][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:01.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:01.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.259][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:01.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:01.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.261][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:01.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:01.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.264][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:01.265][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:01.266][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.266][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.267][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:01.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:01.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.283][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.283][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.284][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.285][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.301][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.302][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.303][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.303][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.320][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.321][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.321][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.322][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:01.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:01.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:01.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:01.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:01.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:01.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.338][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:01.339][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:01.340][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.340][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:01.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:01.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.357][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.358][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.358][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.359][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.367][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:01.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:01.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:01.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:01.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.378][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:01.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:01.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.381][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:01.382][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:01.382][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.383][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.384][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:01.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:01.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:01.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:01.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:01.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:01.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:01.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:01.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.399][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:01.400][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:01.400][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.401][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:01.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:01.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:01.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:01.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:01.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:01.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:01.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:01.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.417][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:01.418][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:01.419][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.419][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:01.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:01.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.427][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.428][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.429][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.429][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.433][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.434][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.434][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.435][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.439][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.439][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.440][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.441][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.444][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.445][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.445][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.446][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.449][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.450][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.451][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.452][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.455][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:01.455][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:01.456][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.457][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.460][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:01.461][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:01.462][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.462][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.466][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:01.466][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:01.467][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.468][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.471][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:01.472][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:01.473][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.473][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.476][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:01.477][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:01.478][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.478][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.482][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:01.483][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:01.483][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.484][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.487][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:01.488][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:01.489][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.489][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.493][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:01.494][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:01.494][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.495][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.498][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:01.499][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:01.500][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.501][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.504][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:01.505][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:01.505][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.506][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.510][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-65124-content.xml".
biodb.DEBUG[2023-04-15 08:03:01.511][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:03:01.512][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:03:01.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:01.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:01.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:01.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:01.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:01.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:01.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:01.521][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.522][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.523][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.523][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.527][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.528][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.529][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.529][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.533][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.534][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.535][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.535][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.539][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.540][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.541][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.541][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.545][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.546][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.547][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.547][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.551][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:01.552][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:01.553][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.553][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:01.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:01.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.558][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:01.558][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:01.559][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.560][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.561][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:01.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:01.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.564][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:01.564][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:01.565][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.566][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.567][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:01.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:01.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.570][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:01.570][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:01.571][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.572][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:01.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:01.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.581][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:01.582][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:01.583][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.583][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:01.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:01.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.587][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:01.588][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:01.589][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.589][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.590][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:01.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:01.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.593][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:01.594][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:01.595][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.596][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:01.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:01.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.599][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:01.600][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:01.601][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.601][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.602][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:01.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:01.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.605][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:01.606][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:01.607][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.607][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.608][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:01.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:01.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.611][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:01.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.620][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:01.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.628][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:01.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:01.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:01.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:01.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.634][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:01.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:01.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.636][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:01.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.645][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:01.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.654][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:01.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:01.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.657][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:01.686][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 65124.
biodb.TRACE[2023-04-15 08:03:01.687][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:03:01.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:03:01.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.690][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:03:01.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:03:01.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.693][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:03:01.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:03:01.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.696][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:03:01.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:03:01.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.699][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:03:01.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:03:01.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.702][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:03:01.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:03:01.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.705][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:03:01.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:03:01.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.715][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:01.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.761][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.762][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.762][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.763][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:01.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:01.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:01.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:01.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:01.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:01.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:01.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:01.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.780][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:01.781][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:01.782][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.782][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:01.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:01.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:01.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:01.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:01.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:01.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:01.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:01.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.805][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:01.805][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:01.806][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.807][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:01.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:01.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.815][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:01.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:01.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.818][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:01.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:01.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.820][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:01.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:01.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.823][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:01.824][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:01.825][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.825][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.826][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:01.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:01.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.834][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:01.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:01.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.836][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:01.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:01.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.839][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:01.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:01.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.842][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:01.843][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:01.843][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.844][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.845][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:01.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:01.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.852][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:01.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:01.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.855][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:01.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:01.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.858][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:01.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:01.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.861][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:01.862][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:01.862][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.863][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:01.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:01.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.871][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:01.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:01.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.874][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:01.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:01.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.877][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:01.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:01.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.880][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:01.881][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:01.881][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.882][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.883][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:01.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:01.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:01.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:01.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:01.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:01.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:01.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:01.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.899][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:01.899][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:01.900][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.901][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:01.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:01.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:01.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:01.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:01.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:01.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:01.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:01.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.918][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:01.919][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:01.919][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.920][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:01.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:01.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.938][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.939][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.939][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.940][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:01.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.958][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.958][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.959][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.960][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:01.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.977][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.978][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.979][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.980][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:01.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.994][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:01.997][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.998][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:01.999][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:01.999][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.000][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:02.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:02.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.022][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.023][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.023][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.024][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:02.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:02.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.035][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:02.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:02.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.038][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:02.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:02.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.041][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:02.042][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:02.043][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.043][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:02.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:02.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.052][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:02.053][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:02.053][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.054][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.058][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:02.058][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:02.059][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.060][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.063][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:02.064][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:02.065][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.065][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.069][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:02.069][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:02.070][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.071][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.074][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:02.075][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:02.076][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.077][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.080][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.081][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.081][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.082][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.086][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:02.086][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:02.087][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.088][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.091][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:02.092][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:02.092][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.093][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.096][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:02.097][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:02.098][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.099][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.102][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:02.103][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:02.104][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.104][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.108][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:02.109][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:02.109][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.110][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.113][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:02.114][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:02.115][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.116][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.119][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:02.120][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:02.121][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.121][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.125][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:02.125][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:02.126][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.127][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.130][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:02.131][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:02.132][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.132][ef$get] fields variable is a list.
biodb.INFO [2023-04-15 08:03:02.136][biodb::testThat]
biodb.INFO [2023-04-15 08:03:02.137][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2023-04-15 08:03:02.138][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:03:02.138][biodb::testThat]
biodb.DEBUG[2023-04-15 08:03:02.140][private$loadEntries] Creating entries from ids [2]: "2, 65124".
biodb.DEBUG[2023-04-15 08:03:02.141][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2023-04-15 08:03:02.143][cch$loadFileContent] Trying to load 2 files from cache: [2]: "2, 65124".
biodb.INFO [2023-04-15 08:03:02.144][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75" for "ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75".
biodb.TRACE[2023-04-15 08:03:02.145][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2023-04-15 08:03:02.145][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:03:02.146][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:03:02.147][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:03:02.148][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:03:02.148][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-04-15 08:03:02.149][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2023-04-15 08:03:02.151][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/2,65124/XML".
biodb.DEBUG[2023-04-15 08:03:02.152][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:02.153][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:02.154][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/2,65124/XML".
biodb.TRACE[2023-04-15 08:03:02.370][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/2,65124/XML).
biodb.TRACE[2023-04-15 08:03:02.603][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/65124.xml"
biodb.DEBUG[2023-04-15 08:03:02.604][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:03:02.605][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2023-04-15 08:03:02.606][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:03:02.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:02.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:02.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:02.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:02.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:02.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:02.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:02.616][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:02.617][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:02.618][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.618][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:02.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:02.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.622][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:02.623][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:02.624][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.624][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:02.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:02.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.628][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:02.629][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:02.630][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.630][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:02.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:02.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.634][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:02.635][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:02.636][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.636][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.637][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:02.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:02.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.640][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:02.641][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:02.641][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.642][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:02.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:02.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.646][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.647][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.647][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.648][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.652][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:02.653][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:02.653][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.654][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.655][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:02.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:02.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.658][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:02.658][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:02.659][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.660][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.661][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:02.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:02.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.663][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:02.664][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:02.665][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.666][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:02.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:02.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.669][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:02.670][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:02.671][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.671][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:02.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:02.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.684][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:02.684][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:02.685][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.686][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.686][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:02.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:02.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.689][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:02.690][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:02.691][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.691][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:02.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:02.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.695][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:02.696][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:02.696][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.697][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.698][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:02.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:02.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.701][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:02.702][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:02.702][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.703][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.704][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:02.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:02.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.706][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:02.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:02.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:02.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:02.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:02.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:02.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.714][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:02.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:02.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:02.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:02.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:02.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:02.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.723][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:02.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.731][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:02.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:02.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:02.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:02.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:02.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:02.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.739][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:02.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:02.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:02.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:02.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:02.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:02.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:02.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:02.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:02.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:02.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:02.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:02.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:02.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:02.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:02.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:02.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:02.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:02.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:02.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:02.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:02.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:02.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:02.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:02.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:02.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:02.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:02.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:02.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:02.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:02.779][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:02.780][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:02.781][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.781][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:02.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:02.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.785][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:02.786][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:02.787][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.787][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:02.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:02.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.791][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:02.792][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:02.793][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.793][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:02.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:02.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.797][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:02.798][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:02.798][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.799][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:02.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:02.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.803][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:02.804][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:02.804][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.805][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:02.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:02.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.809][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.810][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.810][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.811][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.815][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:02.815][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:02.816][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.817][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.818][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:02.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:02.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.821][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:02.821][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:02.822][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.823][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.824][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:02.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:02.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.826][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:02.827][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:02.828][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.828][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:02.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:02.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.832][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:02.833][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:02.834][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.834][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:02.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:02.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.838][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:02.839][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:02.839][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.840][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.841][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:02.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:02.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.844][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:02.845][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:02.845][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.846][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:02.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:02.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.850][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:02.851][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:02.851][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.852][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.853][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:02.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:02.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.856][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:02.856][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:02.857][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.858][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.859][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:02.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:02.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.862][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:02.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:02.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:02.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:02.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:02.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:02.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.870][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:02.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:02.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:02.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:02.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:02.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:02.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.879][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:02.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:02.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.888][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:02.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:02.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:02.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:02.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:02.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:02.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.902][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:02.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:02.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:02.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:02.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:02.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:02.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.910][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:02.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:02.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:02.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:02.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.916][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:02.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:02.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:02.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:02.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:02.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:02.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:02.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:02.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:02.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:02.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:02.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:02.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:02.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:02.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:02.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:02.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:02.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:02.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:02.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:02.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:02.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:02.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:02.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:02.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:02.950][self$createEntryFromContent] Accession numbers: 2, 65124.
biodb.TRACE[2023-04-15 08:03:02.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-04-15 08:03:02.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-04-15 08:03:02.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:03:02.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:03:02.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:03:02.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:03:02.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-04-15 08:03:02.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-04-15 08:03:02.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:03:02.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:03:02.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:03:02.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:03:02.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-15 08:03:02.975][biodb::testThat]
biodb.INFO [2023-04-15 08:03:02.976][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2023-04-15 08:03:02.976][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:03:02.977][biodb::testThat]
biodb.TRACE[2023-04-15 08:03:02.979][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:02.980][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:02.980][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.981][ef$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:02.982][function(conn, opt)] Testing searchForEntries() with entry "2" and field "name".
biodb.TRACE[2023-04-15 08:03:02.991][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:02.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:02.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.994][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:02.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:02.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:02.997][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:02.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:02.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:02.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:03.001][function(conn, opt)] With value "(2-acetyloxy-3-carboxypropyl)-trimethylazanium".
biodb.DEBUG[2023-04-15 08:03:03.024][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2023-04-15 08:03:03.027][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:03.027][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:03.029][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D&retmax=10".
biodb.TRACE[2023-04-15 08:03:03.105][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D&retmax=10 does not exist.
biodb.TRACE[2023-04-15 08:03:03.106][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:03:03.107][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D&retmax=10" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:03:03.108][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D&retmax=10).
biodb.DEBUG[2023-04-15 08:03:03.239][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:03:03.240][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content"
biodb.TRACE[2023-04-15 08:03:03.243][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.request"
biodb.DEBUG[2023-04-15 08:03:03.245][function(conn, opt)] With found IDs [5]: "87229113, 25217148, 450343, 450342, 2".
biodb.TRACE[2023-04-15 08:03:03.254][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:03.254][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:03.255][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:03.256][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:03.256][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:03.257][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:03.258][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:03.259][ef$get] fields variable is a list.
biodb.INFO [2023-04-15 08:03:03.260][biodb::testThat]
biodb.INFO [2023-04-15 08:03:03.261][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2023-04-15 08:03:03.261][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:03:03.262][biodb::testThat]
biodb.TRACE[2023-04-15 08:03:03.270][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:03.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:03.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:03.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:03.273][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:03.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:03.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:03.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:03.276][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:03.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:03.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:03.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:03.301][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2023-04-15 08:03:03.303][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:03.304][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2023-04-15 08:03:03.305][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:03.306][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.INFO [2023-04-15 08:03:03.323][biodb::testThat]
biodb.INFO [2023-04-15 08:03:03.324][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2023-04-15 08:03:03.324][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:03:03.325][biodb::testThat]
biodb.TRACE[2023-04-15 08:03:03.331][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:03:03.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:03:03.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:03.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:03.334][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:03:03.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:03:03.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:03.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:03.337][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:03:03.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:03:03.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:03.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:03.340][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:03:03.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:03:03.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:03.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:03.342][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:03:03.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:03:03.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:03.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:03.345][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:03:03.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:03:03.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:03.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:03.348][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:03:03.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:03:03.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:03.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:03.351][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:03:03.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:03:03.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:03.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:03.354][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:03:03.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:03:03.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:03.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:03.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:03:03.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:03:03.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:03.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:03.359][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:03:03.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:03:03.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:03.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:03.362][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:03:03.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:03:03.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:03.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:03.365][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:03:03.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:03:03.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:03.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:03.368][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:03:03.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:03:03.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:03.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-15 08:03:03.372][biodb::testThat]
biodb.INFO [2023-04-15 08:03:03.373][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2023-04-15 08:03:03.374][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:03:03.374][biodb::testThat]
biodb.INFO [2023-04-15 08:03:03.378][biodb::testThat]
biodb.INFO [2023-04-15 08:03:03.379][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2023-04-15 08:03:03.380][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:03:03.380][biodb::testThat]
biodb.INFO [2023-04-15 08:03:03.384][biodb::testThat]
biodb.INFO [2023-04-15 08:03:03.385][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2023-04-15 08:03:03.385][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:03:03.386][biodb::testThat]
biodb.DEBUG[2023-04-15 08:03:03.388][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/compound/2".
biodb.DEBUG[2023-04-15 08:03:03.516][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/compound/2.
biodb.INFO [2023-04-15 08:03:03.699][biodb::testThat]
biodb.INFO [2023-04-15 08:03:03.700][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2023-04-15 08:03:03.700][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:03:03.701][biodb::testThat]
biodb.DEBUG[2023-04-15 08:03:03.796][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?cid=2&t=l.
biodb.TRACE[2023-04-15 08:03:03.940][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:03.941][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:03.942][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:03.943][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:03.943][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:03.944][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:03.945][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:03.945][ef$get] fields variable is a list.
biodb.INFO [2023-04-15 08:03:03.947][biodb::testThat]
biodb.INFO [2023-04-15 08:03:03.948][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2023-04-15 08:03:03.948][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:03:03.949][biodb::testThat]
biodb.TRACE[2023-04-15 08:03:03.956][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:03.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:03.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:03.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:03.959][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:03.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:03.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:03.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:03.962][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:03.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:03.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:03.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:04.036][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2023-04-15 08:03:04.038][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:04.039][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2023-04-15 08:03:04.040][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:04.041][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2023-04-15 08:03:04.102][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2023-04-15 08:03:04.104][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:04.105][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2023-04-15 08:03:04.106][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:04.107][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.TRACE[2023-04-15 08:03:04.116][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-04-15 08:03:04.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-04-15 08:03:04.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:04.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:04.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:04.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:04.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:04.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:04.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:04.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:04.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:04.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:04.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:04.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:04.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:04.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:04.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:04.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:04.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:04.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:04.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:04.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:04.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:04.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:04.145][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:04.147][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:04.148][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:04.149][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2023-04-15 08:03:04.225][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:03:04.226][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:03:04.227][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:03:04.228][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:03:04.325][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:03:04.326][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content"
biodb.TRACE[2023-04-15 08:03:04.329][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.request"
biodb.DEBUG[2023-04-15 08:03:04.344][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2023-04-15 08:03:04.347][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:04.347][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:04.349][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000".
biodb.TRACE[2023-04-15 08:03:04.425][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000 does not exist.
biodb.TRACE[2023-04-15 08:03:04.426][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:03:04.427][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:03:04.428][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000).
biodb.DEBUG[2023-04-15 08:03:04.852][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:03:04.854][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.content"
biodb.TRACE[2023-04-15 08:03:04.858][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.request"
biodb.DEBUG[2023-04-15 08:03:05.076][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2023-04-15 08:03:05.079][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:05.080][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:05.081][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000".
biodb.TRACE[2023-04-15 08:03:05.157][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000 does not exist.
biodb.TRACE[2023-04-15 08:03:05.158][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:03:05.159][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:03:05.160][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000).
biodb.DEBUG[2023-04-15 08:03:05.321][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:03:05.323][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.content"
biodb.TRACE[2023-04-15 08:03:05.326][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.request"
biodb.DEBUG[2023-04-15 08:03:05.346][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.27[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2023-04-15 08:03:05.348][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:05.349][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:05.350][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.27%5BMolecularWeight%5D&retmax=1000000".
biodb.TRACE[2023-04-15 08:03:05.427][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.27%5BMolecularWeight%5D&retmax=1000000 does not exist.
biodb.TRACE[2023-04-15 08:03:05.428][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:03:05.429][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.27%5BMolecularWeight%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:03:05.430][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.27%5BMolecularWeight%5D&retmax=1000000).
biodb.DEBUG[2023-04-15 08:03:05.642][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:03:05.644][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.content"
biodb.TRACE[2023-04-15 08:03:05.647][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.request"
biodb.TRACE[2023-04-15 08:03:05.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:05.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:05.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:05.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:05.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:05.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:05.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:05.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:05.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:05.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:05.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:05.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:05.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:05.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:05.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:05.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:05.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:05.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:05.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:05.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:05.681][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:05.683][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:05.684][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:05.685][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2023-04-15 08:03:05.830][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:03:05.831][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:03:05.832][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:03:05.833][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:03:05.928][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:03:05.930][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.content"
biodb.TRACE[2023-04-15 08:03:05.933][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.request"
biodb.DEBUG[2023-04-15 08:03:05.947][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2023-04-15 08:03:05.950][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:05.950][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:05.952][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000".
biodb.TRACE[2023-04-15 08:03:06.029][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000 does not exist.
biodb.TRACE[2023-04-15 08:03:06.030][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:03:06.031][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:03:06.032][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000).
biodb.INFO [2023-04-15 08:03:06.111][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000". Retrying connection to server...
biodb.DEBUG[2023-04-15 08:03:06.112][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:06.112][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:06.114][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000".
biodb.TRACE[2023-04-15 08:03:06.197][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000 does not exist.
biodb.TRACE[2023-04-15 08:03:06.198][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:03:06.199][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:03:06.200][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000).
biodb.DEBUG[2023-04-15 08:03:06.353][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:03:06.355][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.content"
biodb.TRACE[2023-04-15 08:03:06.358][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.request"
biodb.DEBUG[2023-04-15 08:03:06.374][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2023-04-15 08:03:06.376][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:06.377][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:06.378][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000".
biodb.TRACE[2023-04-15 08:03:06.454][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000 does not exist.
biodb.TRACE[2023-04-15 08:03:06.455][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:03:06.456][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:03:06.458][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000).
biodb.DEBUG[2023-04-15 08:03:06.833][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:03:06.835][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.content"
biodb.TRACE[2023-04-15 08:03:06.852][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.request"
biodb.DEBUG[2023-04-15 08:03:06.872][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358309[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2023-04-15 08:03:06.875][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:06.876][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:06.877][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358309%5BMonoisotopicMass%5D&retmax=1000000".
biodb.TRACE[2023-04-15 08:03:06.990][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358309%5BMonoisotopicMass%5D&retmax=1000000 does not exist.
biodb.TRACE[2023-04-15 08:03:06.991][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:03:06.993][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358309%5BMonoisotopicMass%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:03:06.994][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358309%5BMonoisotopicMass%5D&retmax=1000000).
biodb.DEBUG[2023-04-15 08:03:07.152][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:03:07.154][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.content"
biodb.TRACE[2023-04-15 08:03:07.157][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.request"
biodb.TRACE[2023-04-15 08:03:07.169][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-04-15 08:03:07.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-04-15 08:03:07.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-15 08:03:07.175][biodb::testThat]
biodb.INFO [2023-04-15 08:03:07.176][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2023-04-15 08:03:07.177][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:03:07.177][biodb::testThat]
biodb.TRACE[2023-04-15 08:03:07.180][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-04-15 08:03:07.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-04-15 08:03:07.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.183][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-04-15 08:03:07.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-04-15 08:03:07.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:07.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:07.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:07.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:07.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:07.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:07.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:07.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:07.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:07.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:07.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:07.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:07.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:07.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:07.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:07.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:07.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:07.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:07.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:07.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:07.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:07.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:07.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:07.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:07.239][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:07.242][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:07.243][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2023-04-15 08:03:07.244][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:07.245][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2023-04-15 08:03:07.246][private$loadEntries] Creating entries from ids [3]: "167529381, 167522372, 167522082".
biodb.DEBUG[2023-04-15 08:03:07.247][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2023-04-15 08:03:07.248][cch$loadFileContent] Trying to load 3 files from cache: [3]: "167529381, 167522372, 167522082".
biodb.TRACE[2023-04-15 08:03:07.249][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2023-04-15 08:03:07.249][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:03:07.250][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:03:07.251][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:03:07.252][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:03:07.252][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-04-15 08:03:07.263][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2023-04-15 08:03:07.265][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167529381,167522372,167522082/XML".
biodb.DEBUG[2023-04-15 08:03:07.267][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:07.267][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:07.268][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167529381,167522372,167522082/XML".
biodb.TRACE[2023-04-15 08:03:07.448][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167529381,167522372,167522082/XML).
biodb.TRACE[2023-04-15 08:03:07.736][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167529381.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167522372.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167522082.xml"
biodb.DEBUG[2023-04-15 08:03:07.738][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:03:07.739][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2023-04-15 08:03:07.740][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:03:07.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:07.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:07.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:07.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:07.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:07.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:07.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:07.751][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:07.752][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:07.752][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.753][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:07.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:07.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.757][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:07.758][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:07.758][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.759][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:07.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:07.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.763][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:07.763][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:07.764][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.765][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.766][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:07.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:07.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.769][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:07.769][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:07.770][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.771][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:07.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:07.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.785][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:07.786][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:07.787][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.787][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:07.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:07.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.791][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:07.792][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:07.792][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.793][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:07.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:07.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.797][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:07.797][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:07.798][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.799][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.799][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:07.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:07.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.802][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:07.803][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:07.804][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.804][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.805][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:07.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:07.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.808][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:07.808][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:07.809][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.810][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.811][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:07.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:07.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.813][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:07.814][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:07.815][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.815][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:07.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:07.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.819][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:07.820][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:07.820][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.821][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.822][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:07.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:07.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.825][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:07.825][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:07.826][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.827][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:07.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:07.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.830][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:07.831][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:07.832][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.832][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.833][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:07.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:07.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.836][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:07.837][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:07.838][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.838][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.839][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:07.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:07.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.842][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:07.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:07.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:07.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:07.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:07.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:07.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.851][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:07.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:07.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:07.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:07.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.856][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:07.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:07.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.859][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:07.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:07.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:07.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:07.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:07.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:07.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.868][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:07.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:07.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:07.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:07.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:07.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:07.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.876][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:07.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:07.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:07.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:07.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:07.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:07.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.884][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:07.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:07.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.887][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:07.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:07.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:07.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:07.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:07.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:07.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.896][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:07.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:07.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:07.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:07.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:07.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:07.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:07.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:07.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:07.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:07.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:07.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:07.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:07.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:07.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:07.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:07.916][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:07.917][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:07.918][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.919][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:07.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:07.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.922][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:07.923][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:07.924][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.924][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:07.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:07.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.928][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:07.929][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:07.930][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.930][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:07.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:07.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.934][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:07.935][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:07.935][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.936][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:07.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:07.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.940][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:07.941][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:07.942][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.942][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:07.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:07.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.946][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:07.947][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:07.947][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.948][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:07.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:07.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.952][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:07.953][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:07.953][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.954][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.955][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:07.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:07.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.958][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:07.959][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:07.959][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.960][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.961][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:07.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:07.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.964][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:07.965][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:07.966][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.966][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:07.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:07.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:07.970][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:07.971][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:07.971][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:07.972][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:08.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:08.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.016][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:08.017][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:08.018][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.018][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.019][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:08.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:08.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.022][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:08.023][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:08.024][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.024][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:08.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:08.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.028][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:08.029][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:08.030][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.030][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.031][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:08.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:08.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.034][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:08.035][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:08.035][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.036][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:08.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:08.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.040][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:08.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:08.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:08.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:08.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:08.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:08.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.048][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:08.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:08.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:08.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:08.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:08.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:08.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.057][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:08.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:08.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:08.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:08.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:08.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:08.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.065][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:08.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:08.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.068][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:08.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:08.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:08.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:08.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.073][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:08.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:08.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:08.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:08.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:08.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:08.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:08.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:08.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.087][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:08.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:08.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:08.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:08.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:08.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:08.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:08.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:08.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:08.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:08.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:08.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:08.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:08.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:08.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:08.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:08.113][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:08.114][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:08.114][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.115][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:08.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:08.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.119][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:08.119][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:08.120][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.121][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.122][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:08.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:08.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.124][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:08.125][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:08.126][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.126][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:08.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:08.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.130][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:08.131][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:08.132][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.132][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:08.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:08.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.136][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:08.137][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:08.137][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.138][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:08.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:08.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.142][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:08.143][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:08.143][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.144][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:08.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:08.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.148][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:08.148][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:08.149][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.150][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.151][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:08.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:08.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.153][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:08.154][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:08.155][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.155][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.156][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:08.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:08.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.159][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:08.160][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:08.161][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.161][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:08.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:08.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.165][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:08.166][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:08.166][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.167][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:08.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:08.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.171][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:08.172][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:08.172][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.173][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.174][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:08.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:08.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.177][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:08.177][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:08.178][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.179][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:08.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:08.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.182][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:08.183][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:08.184][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.184][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:08.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:08.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.188][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:08.189][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:08.189][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.190][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:08.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:08.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.194][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:08.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:08.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:08.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:08.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:08.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:08.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.202][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:08.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:08.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:08.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:08.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:08.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:08.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.211][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:08.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:08.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:08.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:08.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:08.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:08.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.227][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:08.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:08.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:08.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:08.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:08.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:08.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.236][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:08.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:08.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:08.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:08.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:08.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:08.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.244][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:08.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:08.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.247][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:08.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:08.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.255][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:08.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:08.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:08.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:08.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:08.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:08.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:08.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:08.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:08.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:08.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:08.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:08.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:08.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:08.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:08.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:08.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:08.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:08.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:08.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:08.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:08.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:08.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:08.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:08.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:08.291][self$createEntryFromContent] Accession numbers: 167529381, 167522372, 167522082.
biodb.DEBUG[2023-04-15 08:03:08.292][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:08.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:08.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:08.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:08.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:08.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:08.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:08.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:08.301][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.306][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:08.307][private$selectFields]
biodb.TRACE[2023-04-15 08:03:08.307][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:08.308][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:08.309][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:08.309][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.310][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.311][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.311][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.312][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.313][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.314][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.314][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.315][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:08.316][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:08.316][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.317][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.318][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.318][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.319][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:08.320][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.325][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.334][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529381].
biodb.DEBUG[2023-04-15 08:03:08.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:08.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:08.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:08.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:08.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:08.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:08.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:08.342][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.348][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:08.349][private$selectFields]
biodb.TRACE[2023-04-15 08:03:08.349][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:08.350][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:08.350][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:08.351][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.352][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.353][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.353][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.354][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.355][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.355][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.356][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.357][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:08.357][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:08.358][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.359][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.359][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.360][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.361][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:08.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.370][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167522372].
biodb.DEBUG[2023-04-15 08:03:08.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:08.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:08.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:08.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:08.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:08.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:08.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:08.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.384][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:08.384][private$selectFields]
biodb.TRACE[2023-04-15 08:03:08.385][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:08.386][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:08.387][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:08.387][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.388][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.389][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.389][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.390][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.391][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.392][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.393][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.393][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:08.394][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:08.395][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.395][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.396][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.397][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.398][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:08.398][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:08.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:08.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:08.408][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167522082].
biodb.DEBUG[2023-04-15 08:03:08.409][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:08.409][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:08.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:08.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:08.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:08.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:08.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:08.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:08.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:08.451][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:08.454][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:08.455][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:08.456][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2023-04-15 08:03:08.577][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:03:08.577][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:03:08.579][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:03:08.580][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:03:08.678][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:03:08.680][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content"
biodb.TRACE[2023-04-15 08:03:08.683][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.request"
biodb.DEBUG[2023-04-15 08:03:08.684][private$loadEntries] Creating entries from ids [3]: "167514507, 167491345, 167438444".
biodb.DEBUG[2023-04-15 08:03:08.685][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2023-04-15 08:03:08.686][cch$loadFileContent] Trying to load 3 files from cache: [3]: "167514507, 167491345, 167438444".
biodb.TRACE[2023-04-15 08:03:08.687][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2023-04-15 08:03:08.688][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:03:08.689][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:03:08.689][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:03:08.690][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:03:08.691][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-04-15 08:03:08.691][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2023-04-15 08:03:08.693][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167514507,167491345,167438444/XML".
biodb.DEBUG[2023-04-15 08:03:08.694][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:08.695][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:08.696][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167514507,167491345,167438444/XML".
biodb.TRACE[2023-04-15 08:03:08.965][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167514507,167491345,167438444/XML).
biodb.TRACE[2023-04-15 08:03:09.239][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167514507.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167491345.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167438444.xml"
biodb.DEBUG[2023-04-15 08:03:09.241][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:03:09.242][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2023-04-15 08:03:09.243][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:03:09.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:09.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:09.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:09.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:09.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:09.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:09.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:09.253][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:09.254][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:09.255][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.255][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:09.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:09.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.259][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:09.260][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:09.261][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.261][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.262][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:09.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:09.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.265][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:09.266][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:09.266][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.267][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:09.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:09.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.271][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:09.272][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:09.272][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.273][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:09.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:09.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.277][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:09.277][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:09.278][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.279][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:09.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:09.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.283][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:09.283][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:09.284][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.285][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:09.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:09.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.288][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:09.289][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:09.290][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.290][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.291][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:09.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:09.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.294][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:09.295][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:09.296][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.296][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.297][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:09.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:09.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.300][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:09.301][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:09.301][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.302][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:09.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:09.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.306][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:09.307][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:09.307][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.308][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:09.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:09.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.312][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:09.312][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:09.313][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.314][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.315][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:09.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:09.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.317][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:09.318][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:09.319][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.319][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:09.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:09.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.323][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:09.324][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:09.324][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.325][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.326][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:09.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:09.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.329][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:09.330][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:09.330][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.331][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.332][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:09.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:09.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.335][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:09.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:09.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:09.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:09.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:09.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:09.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.343][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:09.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:09.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:09.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:09.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:09.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:09.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.371][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:09.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:09.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:09.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:09.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:09.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:09.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.380][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:09.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:09.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:09.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:09.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:09.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:09.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.398][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:09.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:09.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:09.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:09.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:09.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:09.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.407][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:09.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:09.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.410][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.413][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:09.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:09.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:09.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:09.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:09.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:09.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:09.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:09.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:09.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:09.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:09.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:09.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:09.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:09.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:09.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:09.439][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:09.440][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:09.441][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.441][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:09.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:09.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.445][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:09.446][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:09.446][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.447][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:09.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:09.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.451][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:09.452][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:09.452][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.453][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:09.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:09.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.457][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:09.458][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:09.458][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.459][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:09.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:09.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.463][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:09.463][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:09.464][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.465][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:09.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:09.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.469][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:09.469][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:09.470][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.471][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:09.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:09.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.474][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:09.475][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:09.476][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.476][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.477][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:09.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:09.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.480][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:09.481][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:09.482][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.482][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.483][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:09.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:09.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.486][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:09.487][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:09.487][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.488][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:09.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:09.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.492][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:09.493][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:09.493][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.494][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.495][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:09.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:09.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.498][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:09.499][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:09.499][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.500][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.501][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:09.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:09.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.504][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:09.504][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:09.505][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.506][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:09.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:09.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.509][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:09.510][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:09.511][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.512][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:09.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:09.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.515][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:09.516][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:09.517][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.517][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.518][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:09.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:09.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.521][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:09.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:09.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:09.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:09.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:09.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:09.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.530][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:09.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:09.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:09.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:09.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:09.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:09.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.538][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:09.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:09.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:09.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:09.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:09.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:09.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.546][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:09.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:09.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:09.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:09.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:09.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:09.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.555][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:09.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:09.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:09.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:09.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:09.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:09.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.563][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:09.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:09.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.566][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.569][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:09.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:09.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:09.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:09.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:09.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:09.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:09.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:09.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:09.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:09.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:09.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:09.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:09.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:09.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:09.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:09.595][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:09.596][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:09.596][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.597][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:09.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:09.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.601][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:09.601][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:09.602][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.609][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:09.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:09.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.614][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:09.614][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:09.615][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.616][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:09.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:09.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.619][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:09.620][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:09.621][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.621][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:09.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:09.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.625][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:09.626][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:09.627][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.627][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:09.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:09.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.631][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:09.632][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:09.632][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.633][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.634][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:09.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:09.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.637][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:09.638][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:09.638][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.639][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.640][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:09.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:09.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.643][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:09.643][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:09.644][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.645][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.646][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:09.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:09.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.648][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:09.649][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:09.650][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.651][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:09.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:09.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.654][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:09.655][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:09.656][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.656][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:09.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:09.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.660][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:09.661][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:09.661][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.662][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.663][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:09.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:09.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.666][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:09.666][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:09.667][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.668][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:09.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:09.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.671][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:09.672][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:09.673][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.674][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:09.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:09.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.677][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:09.678][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:09.679][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.679][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:09.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:09.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.683][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:09.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:09.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:09.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:09.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:09.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:09.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.691][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:09.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:09.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:09.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:09.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:09.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:09.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.700][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:09.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:09.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:09.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:09.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:09.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:09.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.708][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:09.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:09.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:09.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:09.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:09.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:09.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.716][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:09.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:09.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:09.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:09.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:09.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:09.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:09.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:09.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.730][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:09.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:09.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.736][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:09.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:09.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:09.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:09.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:09.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:09.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:09.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:09.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:09.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:09.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:09.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:09.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:09.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:09.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:09.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:09.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:09.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:09.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:09.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:09.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:09.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:09.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:09.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:09.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:09.772][self$createEntryFromContent] Accession numbers: 167514507, 167491345, 167438444.
biodb.DEBUG[2023-04-15 08:03:09.787][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:09.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:09.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:09.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:09.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:09.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:09.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:09.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:09.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.822][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:09.823][private$selectFields]
biodb.TRACE[2023-04-15 08:03:09.824][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:09.824][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:09.825][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:09.826][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.826][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.827][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.828][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.828][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.829][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.830][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.831][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.831][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:09.832][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:09.833][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.833][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.834][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.835][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.835][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:09.836][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.839][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.850][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167514507].
biodb.DEBUG[2023-04-15 08:03:09.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:09.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:09.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:09.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:09.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:09.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:09.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:09.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.864][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:09.864][private$selectFields]
biodb.TRACE[2023-04-15 08:03:09.865][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:09.866][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:09.866][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:09.867][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.868][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.868][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.869][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.870][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.870][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.871][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.872][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.872][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:09.873][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:09.874][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.875][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.875][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.876][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.877][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:09.877][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.880][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.886][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167491345].
biodb.DEBUG[2023-04-15 08:03:09.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:09.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:09.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:09.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:09.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:09.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:09.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:09.894][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.900][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:09.900][private$selectFields]
biodb.TRACE[2023-04-15 08:03:09.901][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:09.902][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:09.902][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:09.903][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.904][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.904][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.905][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.906][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.906][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.907][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.908][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.908][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:09.909][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:09.910][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.911][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.911][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.912][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.913][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:09.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.916][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:09.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.922][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167438444].
biodb.DEBUG[2023-04-15 08:03:09.922][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:09.923][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-04-15 08:03:09.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:09.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:09.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:09.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:09.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:09.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:09.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:09.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:09.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:09.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:09.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:09.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:09.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:09.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:09.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:09.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:09.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:09.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:09.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:09.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:09.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:09.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:09.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:09.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:09.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:09.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:10.022][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:10.024][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:10.025][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:10.026][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2023-04-15 08:03:10.117][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:03:10.118][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:03:10.119][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:03:10.120][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:03:10.292][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:03:10.294][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content"
biodb.TRACE[2023-04-15 08:03:10.296][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.request"
biodb.DEBUG[2023-04-15 08:03:10.298][private$loadEntries] Creating entries from ids [3]: "167523845, 167523844, 167523841".
biodb.DEBUG[2023-04-15 08:03:10.299][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2023-04-15 08:03:10.300][cch$loadFileContent] Trying to load 3 files from cache: [3]: "167523845, 167523844, 167523841".
biodb.TRACE[2023-04-15 08:03:10.301][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2023-04-15 08:03:10.302][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:03:10.303][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:03:10.303][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:03:10.304][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:03:10.305][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-04-15 08:03:10.305][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2023-04-15 08:03:10.307][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167523845,167523844,167523841/XML".
biodb.DEBUG[2023-04-15 08:03:10.308][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:10.309][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:10.310][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167523845,167523844,167523841/XML".
biodb.TRACE[2023-04-15 08:03:10.451][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167523845,167523844,167523841/XML).
biodb.TRACE[2023-04-15 08:03:10.704][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167523845.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167523844.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167523841.xml"
biodb.DEBUG[2023-04-15 08:03:10.706][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:03:10.707][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2023-04-15 08:03:10.708][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:03:10.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:10.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:10.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:10.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:10.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:10.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:10.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:10.718][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:10.719][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:10.720][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.720][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:10.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:10.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.724][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:10.725][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:10.725][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.726][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:10.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:10.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.746][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:10.747][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:10.748][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.748][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:10.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:10.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.752][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:10.753][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:10.754][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.754][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:10.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:10.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.758][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:10.759][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:10.760][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.760][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:10.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:10.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.764][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:10.765][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:10.765][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.766][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:10.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:10.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.770][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:10.771][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:10.771][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.772][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.773][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:10.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:10.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.776][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:10.777][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:10.777][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.778][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.779][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:10.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:10.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.782][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:10.782][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:10.783][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.784][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:10.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:10.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.787][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:10.788][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:10.789][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.789][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:10.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:10.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.793][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:10.794][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:10.795][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.795][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.796][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:10.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:10.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.799][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:10.800][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:10.801][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.801][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:10.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:10.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.805][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:10.806][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:10.807][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.807][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.808][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:10.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:10.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.811][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:10.812][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:10.812][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.813][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.814][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:10.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:10.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.817][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:10.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:10.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:10.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:10.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:10.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:10.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.825][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:10.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:10.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:10.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:10.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:10.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:10.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.865][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:10.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:10.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:10.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:10.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:10.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:10.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.874][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:10.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:10.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:10.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:10.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:10.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:10.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.882][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:10.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:10.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:10.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:10.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:10.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:10.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.890][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:10.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:10.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.893][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:10.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:10.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.896][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:10.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:10.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:10.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:10.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.901][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:10.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:10.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:10.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:10.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:10.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:10.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:10.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:10.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:10.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:10.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:10.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:10.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:10.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:10.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:10.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:10.921][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:10.922][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:10.923][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.923][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:10.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:10.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.927][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:10.928][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:10.928][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.929][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:10.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:10.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.933][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:10.934][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:10.934][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.935][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:10.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:10.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.939][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:10.940][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:10.940][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.941][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:10.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:10.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.945][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:10.946][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:10.946][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.947][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:10.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:10.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.951][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:10.951][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:10.952][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.953][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:10.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:10.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.956][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:10.957][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:10.958][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.958][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.959][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:10.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:10.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.962][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:10.963][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:10.964][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.964][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.965][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:10.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:10.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.968][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:10.969][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:10.969][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.970][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:10.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:10.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.974][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:10.974][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:10.975][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.976][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:10.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:10.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.979][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:10.980][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:10.981][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.981][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.982][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:10.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:10.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.985][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:10.986][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:10.987][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.987][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:10.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:10.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.991][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:10.992][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:10.993][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.993][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.994][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:10.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:10.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:10.997][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:10.998][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:10.998][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:10.999][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.000][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:11.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:11.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.003][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:11.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:11.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:11.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:11.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:11.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:11.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.011][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:11.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:11.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:11.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:11.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:11.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:11.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.020][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:11.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:11.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:11.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:11.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:11.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:11.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.028][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:11.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:11.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:11.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:11.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:11.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:11.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.037][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:11.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:11.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:11.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:11.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:11.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:11.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.045][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:11.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:11.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:11.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:11.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:11.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:11.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:11.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:11.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:11.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:11.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:11.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:11.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:11.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:11.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:11.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:11.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:11.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:11.083][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:11.084][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:11.085][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.085][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:11.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:11.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.089][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:11.090][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:11.091][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.091][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:11.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:11.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.095][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:11.096][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:11.097][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.097][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:11.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:11.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.101][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:11.102][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:11.102][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.103][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:11.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:11.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.107][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:11.108][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:11.108][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.109][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:11.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:11.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.113][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:11.113][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:11.114][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.115][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.116][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:11.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:11.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.118][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:11.119][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:11.120][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.121][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.121][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:11.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:11.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.124][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:11.125][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:11.126][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.126][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:11.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:11.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.130][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:11.131][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:11.131][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.132][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:11.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:11.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.136][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:11.137][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:11.137][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.138][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:11.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:11.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.142][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:11.143][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:11.143][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.144][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.145][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:11.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:11.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.148][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:11.148][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:11.149][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.150][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:11.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:11.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.154][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:11.154][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:11.155][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.156][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.156][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:11.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:11.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.159][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:11.160][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:11.161][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.161][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.162][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:11.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:11.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.165][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:11.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:11.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:11.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:11.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:11.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:11.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.174][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:11.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:11.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:11.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:11.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:11.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:11.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.182][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:11.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:11.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:11.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:11.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:11.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:11.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.190][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:11.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:11.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:11.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:11.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:11.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:11.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.199][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:11.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:11.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:11.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:11.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:11.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:11.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.207][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:11.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:11.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.210][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:11.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:11.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:11.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:11.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:11.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:11.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:11.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:11.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:11.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:11.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:11.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:11.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:11.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:11.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:11.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:11.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:11.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:11.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:11.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:11.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:11.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:11.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:11.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:11.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:11.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:11.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:11.254][self$createEntryFromContent] Accession numbers: 167523845, 167523844, 167523841.
biodb.DEBUG[2023-04-15 08:03:11.254][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:11.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:11.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:11.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:11.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:11.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:11.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:11.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:11.270][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.276][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:11.277][private$selectFields]
biodb.TRACE[2023-04-15 08:03:11.277][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:11.278][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:11.278][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:11.279][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.280][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.281][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.281][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.282][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.283][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.283][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.284][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.285][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:11.285][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:11.286][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.287][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.287][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.288][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.289][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:11.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.292][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.295][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.304][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523845].
biodb.DEBUG[2023-04-15 08:03:11.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:11.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:11.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:11.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:11.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:11.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:11.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:11.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.317][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:11.318][private$selectFields]
biodb.TRACE[2023-04-15 08:03:11.318][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:11.319][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:11.320][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:11.320][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.321][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.322][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.322][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.323][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.324][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.324][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.325][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.326][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:11.326][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:11.327][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.328][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.328][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.329][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.330][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:11.331][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.333][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.336][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.339][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523844].
biodb.DEBUG[2023-04-15 08:03:11.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:11.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:11.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:11.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:11.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:11.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:11.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:11.347][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.353][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:11.353][private$selectFields]
biodb.TRACE[2023-04-15 08:03:11.354][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:11.355][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:11.355][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:11.356][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.357][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.357][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.358][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.359][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.359][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.360][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.361][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.361][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:11.362][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:11.363][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.363][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.364][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.365][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.365][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:11.366][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:11.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:11.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:11.374][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523841].
biodb.DEBUG[2023-04-15 08:03:11.375][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:11.376][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:11.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:11.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:11.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:11.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:11.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:11.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:11.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:11.406][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:11.408][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:11.409][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:11.410][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2023-04-15 08:03:11.487][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:03:11.488][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:03:11.489][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:03:11.490][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:03:11.623][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:03:11.625][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content"
biodb.TRACE[2023-04-15 08:03:11.627][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.request"
biodb.DEBUG[2023-04-15 08:03:11.629][private$loadEntries] Creating entries from ids [3]: "167527736, 167513889, 167510581".
biodb.DEBUG[2023-04-15 08:03:11.630][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2023-04-15 08:03:11.631][cch$loadFileContent] Trying to load 3 files from cache: [3]: "167527736, 167513889, 167510581".
biodb.TRACE[2023-04-15 08:03:11.632][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2023-04-15 08:03:11.633][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:03:11.633][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:03:11.634][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:03:11.635][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:03:11.635][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-04-15 08:03:11.636][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2023-04-15 08:03:11.637][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167527736,167513889,167510581/XML".
biodb.DEBUG[2023-04-15 08:03:11.639][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:11.640][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:11.641][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167527736,167513889,167510581/XML".
biodb.TRACE[2023-04-15 08:03:11.799][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167527736,167513889,167510581/XML).
biodb.TRACE[2023-04-15 08:03:12.082][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167527736.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167513889.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167510581.xml"
biodb.DEBUG[2023-04-15 08:03:12.084][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:03:12.085][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2023-04-15 08:03:12.086][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:03:12.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:12.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:12.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:12.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:12.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:12.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:12.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:12.096][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:12.097][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:12.098][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.098][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:12.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:12.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.102][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:12.103][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:12.103][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.104][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:12.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:12.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.119][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:12.120][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:12.121][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.121][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.122][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:12.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:12.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.125][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:12.126][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:12.127][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.128][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:12.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:12.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.131][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:12.132][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:12.133][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.133][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.134][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:12.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:12.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.137][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:12.138][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:12.139][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.139][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:12.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:12.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.143][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:12.144][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:12.145][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.145][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.146][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:12.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:12.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.149][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:12.150][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:12.150][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.151][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.152][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:12.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:12.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.155][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:12.156][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:12.156][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.157][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:12.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:12.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.161][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:12.162][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:12.162][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.163][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:12.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:12.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.167][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:12.167][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:12.168][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.169][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.170][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:12.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:12.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.173][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:12.173][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:12.174][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.175][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:12.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:12.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.178][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:12.179][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:12.180][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.180][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.181][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:12.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:12.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.184][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:12.185][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:12.186][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.186][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.187][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:12.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:12.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.190][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:12.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:12.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:12.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:12.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:12.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:12.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.199][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:12.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:12.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:12.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:12.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:12.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:12.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.228][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:12.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:12.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:12.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:12.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:12.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:12.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.236][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:12.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:12.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:12.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:12.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:12.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:12.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.245][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:12.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:12.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:12.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:12.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:12.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:12.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:12.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:12.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.256][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.259][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:12.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:12.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.264][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:12.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:12.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:12.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:12.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:12.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:12.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:12.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:12.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:12.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:12.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:12.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:12.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:12.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:12.285][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:12.286][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:12.286][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.287][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:12.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:12.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.291][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:12.291][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:12.292][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.293][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:12.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:12.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.297][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:12.297][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:12.298][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.299][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:12.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:12.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.303][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:12.303][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:12.304][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.305][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:12.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:12.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.309][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:12.309][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:12.310][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.311][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:12.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:12.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.321][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:12.322][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:12.323][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.324][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:12.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:12.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.328][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:12.328][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:12.329][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.330][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.331][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:12.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:12.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.334][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:12.334][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:12.335][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.336][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.337][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:12.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:12.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.340][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:12.340][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:12.341][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.342][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.343][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:12.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:12.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.346][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:12.346][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:12.347][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.348][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:12.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:12.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.352][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:12.352][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:12.353][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.354][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.355][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:12.355][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:12.356][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.357][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:12.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:12.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.360][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:12.361][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:12.362][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.362][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.363][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:12.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:12.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.366][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:12.367][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:12.368][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.369][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.369][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:12.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:12.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.372][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:12.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:12.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:12.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:12.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:12.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:12.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.381][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:12.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:12.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:12.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:12.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:12.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:12.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.389][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:12.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:12.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:12.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:12.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:12.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:12.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.398][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:12.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:12.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.401][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:12.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:12.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:12.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:12.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.407][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:12.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:12.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:12.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:12.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:12.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:12.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.415][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:12.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:12.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.418][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:12.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:12.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:12.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:12.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:12.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:12.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:12.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:12.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:12.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:12.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:12.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:12.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:12.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:12.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:12.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:12.447][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:12.448][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:12.449][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.450][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:12.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:12.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.453][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:12.454][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:12.455][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.455][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:12.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:12.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.459][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:12.460][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:12.460][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.461][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:12.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:12.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.465][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:12.466][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:12.466][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.467][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:12.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:12.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.471][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:12.472][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:12.472][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.473][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:12.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:12.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.477][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:12.478][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:12.478][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.479][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:12.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:12.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.483][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:12.483][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:12.484][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.485][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.486][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:12.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:12.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.489][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:12.489][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:12.490][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.491][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.492][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:12.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:12.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.494][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:12.495][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:12.496][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.496][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:12.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:12.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.500][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:12.501][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:12.502][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.502][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.503][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:12.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:12.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.506][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:12.507][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:12.507][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.508][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.509][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:12.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:12.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.512][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:12.512][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:12.513][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.514][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:12.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:12.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.517][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:12.518][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:12.519][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.519][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.520][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:12.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:12.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.523][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:12.524][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:12.530][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.531][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.532][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:12.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:12.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.536][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:12.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:12.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:12.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:12.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:12.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:12.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.544][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:12.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:12.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:12.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:12.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.550][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:12.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:12.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.553][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:12.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:12.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:12.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:12.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:12.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:12.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.561][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:12.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:12.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:12.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:12.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:12.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:12.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.569][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:12.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:12.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:12.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:12.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:12.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:12.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.578][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:12.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:12.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.583][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:12.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:12.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.589][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:12.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:12.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:12.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:12.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:12.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:12.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:12.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:12.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:12.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:12.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:12.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:12.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:12.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:12.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:12.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:12.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:12.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:12.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:12.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:12.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:12.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:12.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:12.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:12.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:12.625][self$createEntryFromContent] Accession numbers: 167527736, 167513889, 167510581.
biodb.DEBUG[2023-04-15 08:03:12.626][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:12.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:12.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:12.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:12.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:12.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:12.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:12.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:12.635][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.641][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:12.641][private$selectFields]
biodb.TRACE[2023-04-15 08:03:12.642][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:12.643][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:12.643][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:12.644][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.645][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.646][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.646][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.647][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.648][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.648][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.649][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.650][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:12.650][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:12.651][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.652][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.652][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.653][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.654][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:12.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.657][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.669][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167527736].
biodb.DEBUG[2023-04-15 08:03:12.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:12.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:12.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:12.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:12.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:12.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:12.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:12.677][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.683][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:12.684][private$selectFields]
biodb.TRACE[2023-04-15 08:03:12.685][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:12.685][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:12.686][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:12.687][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.687][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.688][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.689][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.689][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.690][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.691][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.691][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.692][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:12.693][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:12.693][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.694][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.695][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.695][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.696][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:12.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.700][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.706][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167513889].
biodb.DEBUG[2023-04-15 08:03:12.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:12.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:12.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:12.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:12.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:12.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:12.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:12.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.720][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:12.720][private$selectFields]
biodb.TRACE[2023-04-15 08:03:12.721][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:12.721][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:12.722][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:12.723][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.724][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.724][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.725][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.725][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.726][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.727][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.728][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.734][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:12.735][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:12.736][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.737][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.738][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.739][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.739][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:12.740][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:12.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.749][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167510581].
biodb.DEBUG[2023-04-15 08:03:12.749][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:12.750][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-04-15 08:03:12.756][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-04-15 08:03:12.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-04-15 08:03:12.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.759][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-04-15 08:03:12.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-04-15 08:03:12.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-15 08:03:12.762][biodb::testThat]
biodb.INFO [2023-04-15 08:03:12.763][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2023-04-15 08:03:12.764][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:03:12.764][biodb::testThat]
biodb.TRACE[2023-04-15 08:03:12.767][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-04-15 08:03:12.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-04-15 08:03:12.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.769][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-04-15 08:03:12.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-04-15 08:03:12.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:12.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:12.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:12.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:12.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:12.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:12.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:12.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:12.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:12.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:12.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:12.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:12.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:12.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:12.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:12.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:12.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:12.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:12.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:12.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:12.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:12.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:12.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:12.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:12.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:12.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:12.826][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364:204.2430636[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:12.828][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:12.829][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:12.831][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364%3A204.2430636%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2023-04-15 08:03:12.917][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364%3A204.2430636%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:03:12.917][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:03:12.919][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364%3A204.2430636%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:03:12.920][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364%3A204.2430636%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:03:13.009][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:03:13.011][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.content"
biodb.TRACE[2023-04-15 08:03:13.013][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.request"
biodb.DEBUG[2023-04-15 08:03:13.015][private$loadEntries] Creating entries from ids [3]: "167510855, 167430457, 167253771".
biodb.DEBUG[2023-04-15 08:03:13.016][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2023-04-15 08:03:13.017][cch$loadFileContent] Trying to load 3 files from cache: [3]: "167510855, 167430457, 167253771".
biodb.TRACE[2023-04-15 08:03:13.018][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2023-04-15 08:03:13.018][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:03:13.019][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:03:13.020][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:03:13.020][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:03:13.021][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-04-15 08:03:13.022][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2023-04-15 08:03:13.023][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167510855,167430457,167253771/XML".
biodb.DEBUG[2023-04-15 08:03:13.025][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:13.025][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:13.026][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167510855,167430457,167253771/XML".
biodb.TRACE[2023-04-15 08:03:13.142][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167510855,167430457,167253771/XML).
biodb.TRACE[2023-04-15 08:03:13.399][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167510855.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167430457.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167253771.xml"
biodb.DEBUG[2023-04-15 08:03:13.401][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:03:13.402][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2023-04-15 08:03:13.403][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:03:13.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:13.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:13.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:13.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:13.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:13.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:13.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:13.413][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:13.414][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:13.415][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.415][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:13.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:13.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.419][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:13.420][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:13.420][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.421][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:13.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:13.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.425][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:13.425][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:13.426][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.427][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:13.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:13.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.430][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:13.431][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:13.432][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.432][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:13.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:13.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.436][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:13.437][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:13.437][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.438][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:13.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:13.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.442][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:13.443][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:13.443][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.444][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:13.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:13.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.448][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:13.448][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:13.449][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.450][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.450][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:13.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:13.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.453][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:13.454][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:13.455][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.455][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.456][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:13.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:13.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.459][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:13.460][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:13.460][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.461][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:13.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:13.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.465][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:13.465][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:13.466][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.467][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:13.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:13.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.470][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:13.471][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:13.472][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.472][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.473][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:13.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:13.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.476][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:13.477][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:13.478][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.478][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:13.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:13.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.492][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:13.493][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:13.494][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.495][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.496][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:13.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:13.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.499][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:13.500][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:13.501][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.501][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.502][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:13.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:13.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.505][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:13.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:13.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:13.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:13.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:13.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:13.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.514][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:13.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:13.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:13.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:13.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:13.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:13.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.543][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:13.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:13.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:13.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:13.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:13.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:13.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.551][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:13.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:13.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:13.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:13.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:13.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:13.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.559][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:13.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:13.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:13.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:13.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:13.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:13.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.568][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:13.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:13.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.571][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:13.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:13.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:13.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:13.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:13.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:13.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:13.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:13.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:13.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:13.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:13.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:13.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:13.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:13.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:13.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:13.599][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:13.600][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:13.601][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.601][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:13.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:13.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.605][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:13.606][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:13.607][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.607][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:13.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:13.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.611][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:13.612][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:13.612][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.613][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:13.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:13.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.617][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:13.618][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:13.618][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.619][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:13.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:13.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.623][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:13.623][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:13.624][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.625][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:13.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:13.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.628][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:13.629][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:13.630][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.630][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:13.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:13.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.634][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:13.635][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:13.636][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.636][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.637][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:13.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:13.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.640][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:13.641][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:13.641][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.642][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.643][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:13.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:13.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.646][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:13.646][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:13.647][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.648][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:13.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:13.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.651][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:13.652][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:13.653][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.653][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:13.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:13.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.657][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:13.658][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:13.658][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.659][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.660][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:13.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:13.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.663][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:13.663][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:13.664][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.665][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:13.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:13.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.668][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:13.669][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:13.670][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.670][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.671][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:13.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:13.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.674][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:13.675][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:13.675][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.676][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.677][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:13.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:13.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.680][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:13.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:13.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:13.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:13.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:13.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:13.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.696][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:13.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:13.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:13.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:13.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:13.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:13.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.704][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:13.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:13.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:13.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:13.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:13.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:13.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.713][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:13.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:13.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:13.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:13.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:13.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:13.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.721][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:13.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:13.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:13.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:13.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:13.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:13.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.729][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:13.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:13.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.735][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:13.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:13.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.740][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:13.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:13.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:13.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:13.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:13.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:13.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:13.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:13.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:13.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:13.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:13.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:13.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:13.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:13.761][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:13.762][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:13.763][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.763][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:13.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:13.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.767][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:13.768][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:13.768][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.769][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:13.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:13.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.773][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:13.773][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:13.774][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.775][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:13.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:13.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.779][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:13.779][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:13.780][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.781][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:13.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:13.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.784][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:13.785][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:13.786][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.786][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:13.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:13.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.790][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:13.791][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:13.791][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.792][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:13.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:13.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.796][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:13.797][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:13.797][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.798][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.799][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:13.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:13.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.802][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:13.802][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:13.803][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.804][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.804][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:13.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:13.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.807][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:13.808][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:13.809][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.809][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:13.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:13.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.813][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:13.814][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:13.814][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.815][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:13.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:13.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.819][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:13.819][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:13.820][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.821][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.821][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:13.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:13.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.824][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:13.825][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:13.826][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.826][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:13.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:13.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.830][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:13.831][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:13.831][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.832][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.833][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:13.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:13.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.836][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:13.836][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:13.837][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.838][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.838][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:13.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:13.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.841][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:13.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:13.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:13.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:13.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:13.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:13.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.850][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:13.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:13.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:13.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:13.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:13.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:13.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.858][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:13.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:13.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:13.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:13.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:13.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:13.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.866][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:13.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:13.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:13.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:13.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:13.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:13.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.875][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:13.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:13.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:13.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:13.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:13.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:13.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.883][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:13.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:13.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.889][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:13.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:13.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.902][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:13.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:13.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:13.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:13.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:13.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:13.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:13.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:13.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:13.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:13.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:13.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:13.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:13.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:13.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:13.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:13.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:13.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:13.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:13.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:13.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:13.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:13.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:13.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:13.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:13.938][self$createEntryFromContent] Accession numbers: 167510855, 167430457, 167253771.
biodb.DEBUG[2023-04-15 08:03:13.939][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:13.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:13.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:13.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:13.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:13.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:13.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:13.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:13.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.951][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.954][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:13.955][private$selectFields]
biodb.TRACE[2023-04-15 08:03:13.955][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:13.956][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:13.957][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:13.957][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.958][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.959][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.959][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.960][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.961][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.962][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.962][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.963][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:13.964][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:13.964][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.965][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.966][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.966][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.967][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:13.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.982][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167510855].
biodb.DEBUG[2023-04-15 08:03:13.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:13.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:13.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:13.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:13.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:13.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:13.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:13.991][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:13.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:13.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:13.996][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:13.997][private$selectFields]
biodb.TRACE[2023-04-15 08:03:13.998][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:13.998][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:13.999][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:14.000][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.000][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.001][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:14.002][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:14.002][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.003][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.004][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:14.004][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:14.005][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:14.006][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:14.007][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.007][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.008][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:14.009][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:14.009][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:14.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:14.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:14.013][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:14.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:14.016][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:14.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:14.019][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167430457].
biodb.DEBUG[2023-04-15 08:03:14.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:14.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:14.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:14.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:14.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:14.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:14.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:14.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:14.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:14.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:14.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:14.032][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:14.033][private$selectFields]
biodb.TRACE[2023-04-15 08:03:14.034][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:14.034][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:14.035][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:14.036][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.036][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.037][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:14.038][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:14.038][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.039][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.040][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:14.041][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:14.041][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:14.042][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:14.043][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.043][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.044][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:14.045][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:14.045][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:14.046][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:14.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:14.049][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:14.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:14.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:14.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:14.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:14.055][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167253771].
biodb.DEBUG[2023-04-15 08:03:14.055][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:14.056][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:14.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:14.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:14.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:14.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:14.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:14.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:14.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:14.087][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715:226.19339285[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:14.089][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:14.090][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:14.091][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2023-04-15 08:03:14.199][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:03:14.207][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:03:14.209][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:03:14.210][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:03:14.615][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:03:14.617][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.content"
biodb.TRACE[2023-04-15 08:03:14.619][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.request"
biodb.DEBUG[2023-04-15 08:03:14.621][private$loadEntries] Creating entries from ids [3]: "167433165, 167363571, 167298842".
biodb.DEBUG[2023-04-15 08:03:14.622][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2023-04-15 08:03:14.623][cch$loadFileContent] Trying to load 3 files from cache: [3]: "167433165, 167363571, 167298842".
biodb.TRACE[2023-04-15 08:03:14.624][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2023-04-15 08:03:14.624][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:03:14.625][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:03:14.626][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:03:14.626][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:03:14.627][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-04-15 08:03:14.628][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2023-04-15 08:03:14.629][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167433165,167363571,167298842/XML".
biodb.DEBUG[2023-04-15 08:03:14.631][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:14.631][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:14.632][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167433165,167363571,167298842/XML".
biodb.TRACE[2023-04-15 08:03:14.796][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167433165,167363571,167298842/XML).
biodb.TRACE[2023-04-15 08:03:15.002][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167433165.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167363571.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167298842.xml"
biodb.DEBUG[2023-04-15 08:03:15.004][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:03:15.005][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2023-04-15 08:03:15.006][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:03:15.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:15.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:15.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:15.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:15.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:15.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:15.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:15.016][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:15.017][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:15.018][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.018][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:15.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:15.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.022][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:15.023][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:15.024][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.024][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:15.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:15.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.028][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:15.029][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:15.030][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.030][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:15.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:15.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.034][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:15.035][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:15.036][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.036][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:15.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:15.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.040][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:15.041][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:15.041][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.042][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:15.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:15.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.046][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:15.047][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:15.047][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.048][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:15.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:15.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.052][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:15.052][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:15.053][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.054][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.055][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:15.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:15.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.058][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:15.058][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:15.059][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.060][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:15.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:15.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.063][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:15.064][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:15.065][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.065][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:15.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:15.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.069][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:15.070][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:15.071][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.071][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:15.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:15.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.075][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:15.076][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:15.077][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.077][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.078][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:15.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:15.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.081][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:15.082][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:15.083][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.083][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:15.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:15.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.087][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:15.088][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:15.089][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.089][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.090][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:15.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:15.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.093][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:15.094][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:15.095][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.095][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.096][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:15.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:15.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.099][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:15.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:15.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:15.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:15.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:15.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:15.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.108][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:15.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:15.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:15.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:15.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:15.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:15.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.136][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:15.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:15.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:15.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:15.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:15.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:15.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.145][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:15.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:15.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:15.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:15.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:15.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:15.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.154][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:15.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:15.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:15.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:15.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:15.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:15.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.162][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:15.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:15.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.165][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.168][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:15.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:15.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.198][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:15.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:15.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:15.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:15.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:15.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:15.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:15.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:15.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:15.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:15.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:15.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:15.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:15.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:15.221][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:15.221][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:15.222][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.223][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:15.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:15.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.227][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:15.228][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:15.228][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.229][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:15.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:15.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.233][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:15.234][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:15.235][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.236][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:15.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:15.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.239][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:15.240][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:15.241][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.242][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:15.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:15.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.246][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:15.246][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:15.247][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.248][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:15.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:15.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.252][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:15.253][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:15.253][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.254][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:15.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:15.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.258][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:15.259][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:15.259][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.260][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.261][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:15.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:15.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.264][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:15.265][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:15.265][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.266][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.267][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:15.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:15.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.270][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:15.271][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:15.272][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.272][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:15.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:15.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.276][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:15.277][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:15.278][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.278][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:15.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:15.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.282][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:15.283][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:15.284][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.284][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.285][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:15.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:15.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.288][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:15.289][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:15.290][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.291][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:15.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:15.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.295][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:15.295][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:15.296][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.297][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:15.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:15.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.300][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:15.301][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:15.302][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.303][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.304][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:15.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:15.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.307][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:15.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:15.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:15.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:15.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:15.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:15.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.316][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:15.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:15.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:15.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:15.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:15.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:15.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.325][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:15.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:15.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:15.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:15.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:15.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:15.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.334][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:15.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:15.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:15.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:15.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:15.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:15.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.343][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:15.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:15.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:15.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:15.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:15.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:15.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.351][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:15.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:15.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:15.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:15.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:15.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:15.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:15.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:15.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:15.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:15.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:15.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:15.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:15.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:15.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:15.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:15.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:15.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:15.383][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:15.383][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:15.384][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.385][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:15.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:15.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.388][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:15.389][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:15.390][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.390][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:15.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:15.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.394][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:15.395][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:15.396][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.396][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:15.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:15.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.400][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:15.401][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:15.402][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.402][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:15.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:15.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.407][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:15.407][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:15.408][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.409][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:15.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:15.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.560][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:15.560][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:15.561][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.562][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:15.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:15.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.565][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:15.566][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:15.567][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.567][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.568][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:15.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:15.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.571][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:15.572][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:15.572][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.573][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:15.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:15.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.577][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:15.577][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:15.578][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.579][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:15.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:15.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.582][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:15.583][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:15.584][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.584][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:15.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:15.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.588][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:15.589][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:15.589][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.590][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.591][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:15.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:15.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.594][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:15.594][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:15.595][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.596][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:15.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:15.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.599][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:15.600][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:15.600][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.601][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.602][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:15.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:15.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.604][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:15.605][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:15.606][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.606][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.607][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:15.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:15.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.610][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:15.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:15.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:15.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:15.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:15.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:15.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.618][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:15.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:15.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:15.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:15.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:15.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:15.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.626][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:15.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:15.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:15.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:15.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:15.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:15.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.634][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:15.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:15.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.637][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:15.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:15.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:15.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:15.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.642][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:15.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:15.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:15.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:15.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:15.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:15.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.650][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:15.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:15.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.653][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:15.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:15.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:15.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:15.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:15.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:15.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:15.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:15.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:15.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:15.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:15.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:15.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:15.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:15.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:15.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:15.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:15.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:15.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:15.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:15.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:15.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:15.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:15.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:15.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:15.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:15.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:15.695][self$createEntryFromContent] Accession numbers: 167433165, 167363571, 167298842.
biodb.DEBUG[2023-04-15 08:03:15.696][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:15.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:15.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:15.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:15.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:15.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:15.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:15.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:15.704][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.707][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.710][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:15.710][private$selectFields]
biodb.TRACE[2023-04-15 08:03:15.711][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:15.712][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:15.712][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:15.713][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.714][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.715][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.715][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.716][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.717][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.717][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.718][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.718][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:15.719][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:15.720][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.721][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.721][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.722][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.723][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:15.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.729][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.737][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167433165].
biodb.DEBUG[2023-04-15 08:03:15.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:15.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:15.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:15.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:15.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:15.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:15.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:15.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.751][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:15.752][private$selectFields]
biodb.TRACE[2023-04-15 08:03:15.753][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:15.753][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:15.754][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:15.755][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.760][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.760][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.761][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.762][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.762][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.763][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.764][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.764][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:15.765][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:15.766][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.766][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.767][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.768][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.768][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:15.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.777][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167363571].
biodb.DEBUG[2023-04-15 08:03:15.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:15.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:15.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:15.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:15.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:15.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:15.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:15.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.790][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:15.791][private$selectFields]
biodb.TRACE[2023-04-15 08:03:15.792][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:15.792][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:15.793][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:15.794][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.794][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.795][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.796][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.796][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.797][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.798][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.798][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.799][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:15.800][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:15.800][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.801][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.802][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.802][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.803][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:15.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:15.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.812][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167298842].
biodb.DEBUG[2023-04-15 08:03:15.812][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:15.813][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-04-15 08:03:15.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:15.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:15.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:15.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:15.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:15.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:15.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:15.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:15.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:15.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:15.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:15.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:15.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:15.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:15.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:15.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:15.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:15.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:15.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:15.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:15.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:15.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:15.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:15.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:15.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:15.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:15.869][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254:204.126644913746[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:15.871][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:15.872][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:15.873][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254%3A204.126644913746%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2023-04-15 08:03:15.951][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254%3A204.126644913746%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:03:15.952][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:03:15.953][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254%3A204.126644913746%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:03:15.954][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254%3A204.126644913746%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:03:16.358][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:03:16.360][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.content"
biodb.TRACE[2023-04-15 08:03:16.362][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.request"
biodb.DEBUG[2023-04-15 08:03:16.364][private$loadEntries] Creating entries from ids [3]: "167522975, 167521614, 167521452".
biodb.DEBUG[2023-04-15 08:03:16.365][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2023-04-15 08:03:16.366][cch$loadFileContent] Trying to load 3 files from cache: [3]: "167522975, 167521614, 167521452".
biodb.TRACE[2023-04-15 08:03:16.366][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2023-04-15 08:03:16.367][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:03:16.368][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:03:16.369][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:03:16.369][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:03:16.370][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-04-15 08:03:16.371][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2023-04-15 08:03:16.372][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167522975,167521614,167521452/XML".
biodb.DEBUG[2023-04-15 08:03:16.373][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:16.374][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:16.375][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167522975,167521614,167521452/XML".
biodb.TRACE[2023-04-15 08:03:16.513][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167522975,167521614,167521452/XML).
biodb.TRACE[2023-04-15 08:03:16.779][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167522975.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167521614.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167521452.xml"
biodb.DEBUG[2023-04-15 08:03:16.781][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:03:16.782][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2023-04-15 08:03:16.783][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:03:16.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:16.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:16.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:16.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:16.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:16.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:16.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:16.792][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:16.793][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:16.794][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.794][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:16.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:16.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.798][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:16.799][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:16.799][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.800][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:16.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:16.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.804][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:16.804][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:16.805][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.806][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:16.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:16.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.809][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:16.810][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:16.811][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.811][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:16.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:16.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.815][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:16.815][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:16.816][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.817][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:16.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:16.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.820][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:16.821][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:16.822][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.822][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:16.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:16.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.826][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:16.827][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:16.827][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.828][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.829][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:16.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:16.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.832][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:16.832][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:16.833][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.834][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.835][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:16.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:16.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.837][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:16.838][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:16.839][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.839][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:16.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:16.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.851][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:16.851][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:16.852][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.853][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:16.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:16.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.856][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:16.857][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:16.858][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.858][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.859][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:16.860][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:16.860][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.861][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:16.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:16.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.864][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:16.865][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:16.866][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.866][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.867][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:16.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:16.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.870][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:16.871][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:16.871][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.872][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.873][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:16.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:16.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.875][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:16.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:16.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:16.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:16.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:16.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:16.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.883][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:16.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:16.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:16.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:16.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.907][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:16.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:16.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.910][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:16.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:16.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:16.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:16.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:16.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:16.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.917][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:16.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:16.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.920][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:16.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:16.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:16.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:16.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.925][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:16.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:16.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:16.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:16.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:16.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:16.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.933][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:16.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:16.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.936][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:16.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:16.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:16.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:16.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:16.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:16.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:16.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:16.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:16.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:16.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:16.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:16.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:16.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:16.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:16.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:16.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:16.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:16.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:16.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:16.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:16.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:16.963][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:16.964][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:16.964][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.965][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:16.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:16.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.969][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:16.970][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:16.970][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.971][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:16.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:16.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.975][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:16.975][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:16.976][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.977][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:16.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:16.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.981][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:16.981][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:16.982][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.983][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:16.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:16.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.986][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:16.987][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:16.988][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.988][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:16.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:16.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.992][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:16.993][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:16.993][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.994][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:16.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:16.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:16.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:16.998][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:16.998][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:16.999][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.000][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.000][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:17.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:17.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.003][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:17.004][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:17.004][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.005][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.006][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:17.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:17.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.009][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:17.009][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:17.010][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.011][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:17.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:17.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.014][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:17.015][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:17.016][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.016][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:17.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:17.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.020][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:17.020][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:17.021][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.022][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.023][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:17.023][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:17.024][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.025][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:17.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:17.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.028][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:17.029][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:17.030][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.030][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.031][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:17.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:17.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.034][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:17.035][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:17.035][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.036][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:17.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:17.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.044][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:17.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:17.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:17.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:17.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:17.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:17.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.052][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:17.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:17.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:17.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:17.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:17.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:17.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.060][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:17.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:17.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:17.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:17.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:17.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:17.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.067][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:17.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:17.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:17.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:17.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:17.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:17.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.075][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:17.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:17.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:17.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:17.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:17.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:17.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.083][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:17.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:17.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.086][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:17.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:17.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.094][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:17.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:17.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:17.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:17.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:17.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:17.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:17.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:17.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:17.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:17.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:17.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:17.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:17.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:17.113][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:17.114][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:17.114][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.115][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:17.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:17.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.118][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:17.119][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:17.120][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.120][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.121][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:17.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:17.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.124][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:17.125][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:17.125][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.126][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:17.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:17.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.129][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:17.130][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:17.131][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.131][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:17.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:17.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.135][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:17.136][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:17.136][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.137][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:17.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:17.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.140][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:17.141][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:17.142][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.142][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:17.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:17.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.146][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:17.147][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:17.147][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.148][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.149][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:17.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:17.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.152][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:17.152][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:17.153][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.153][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.154][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:17.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:17.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.157][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:17.158][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:17.158][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.159][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:17.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:17.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.163][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:17.163][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:17.164][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.164][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.165][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:17.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:17.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.168][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:17.169][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:17.169][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.170][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.171][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:17.172][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:17.172][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.173][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:17.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:17.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.176][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:17.177][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:17.178][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.178][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.179][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:17.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:17.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.182][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:17.182][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:17.183][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.184][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:17.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:17.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.187][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:17.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:17.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:17.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:17.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:17.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:17.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.195][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:17.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:17.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:17.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:17.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:17.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:17.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.203][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:17.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:17.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:17.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:17.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:17.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:17.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.211][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:17.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:17.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:17.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:17.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:17.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:17.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.219][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:17.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:17.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:17.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:17.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:17.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:17.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.227][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:17.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:17.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.230][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:17.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:17.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:17.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:17.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:17.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:17.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:17.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:17.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:17.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:17.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:17.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:17.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:17.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:17.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:17.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:17.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:17.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:17.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:17.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:17.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:17.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:17.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:17.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:17.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:17.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:17.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:17.276][self$createEntryFromContent] Accession numbers: 167522975, 167521614, 167521452.
biodb.DEBUG[2023-04-15 08:03:17.277][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:17.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:17.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:17.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:17.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:17.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:17.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:17.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:17.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.288][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.291][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:17.291][private$selectFields]
biodb.TRACE[2023-04-15 08:03:17.292][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:17.293][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:17.293][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:17.294][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.295][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.295][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.296][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.297][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.297][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.298][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.298][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.299][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:17.300][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:17.300][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.301][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.302][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.302][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.303][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:17.304][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.306][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.309][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.317][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167522975].
biodb.DEBUG[2023-04-15 08:03:17.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:17.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:17.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:17.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:17.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:17.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:17.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:17.325][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.327][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.330][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:17.331][private$selectFields]
biodb.TRACE[2023-04-15 08:03:17.331][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:17.332][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:17.333][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:17.334][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.334][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.335][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.336][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.336][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.337][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.338][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.338][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.339][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:17.340][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:17.340][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.341][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.341][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.342][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.343][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:17.344][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.349][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.352][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167521614].
biodb.DEBUG[2023-04-15 08:03:17.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:17.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:17.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:17.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:17.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:17.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:17.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:17.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.365][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:17.366][private$selectFields]
biodb.TRACE[2023-04-15 08:03:17.366][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:17.367][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:17.367][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:17.368][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.369][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.369][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.370][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.371][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.371][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.372][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.373][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.373][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:17.374][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:17.375][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.375][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.376][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.376][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.377][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:17.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:17.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:17.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:17.386][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167521452].
biodb.DEBUG[2023-04-15 08:03:17.387][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:17.387][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:17.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:17.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:17.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:17.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:17.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:17.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:17.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:17.417][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429:226.062362304571[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:17.419][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:17.420][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:17.421][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2023-04-15 08:03:17.500][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:03:17.501][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:03:17.502][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:03:17.503][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:03:17.615][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:03:17.617][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.content"
biodb.TRACE[2023-04-15 08:03:17.619][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.request"
biodb.DEBUG[2023-04-15 08:03:17.621][private$loadEntries] Creating entries from ids [2]: "167491296, 167491268".
biodb.DEBUG[2023-04-15 08:03:17.622][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2023-04-15 08:03:17.623][cch$loadFileContent] Trying to load 2 files from cache: [2]: "167491296, 167491268".
biodb.TRACE[2023-04-15 08:03:17.624][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2023-04-15 08:03:17.624][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:03:17.625][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:03:17.630][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:03:17.632][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:03:17.633][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-04-15 08:03:17.633][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2023-04-15 08:03:17.635][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167491296,167491268/XML".
biodb.DEBUG[2023-04-15 08:03:17.636][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:17.637][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:17.638][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167491296,167491268/XML".
biodb.TRACE[2023-04-15 08:03:17.788][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167491296,167491268/XML).
biodb.TRACE[2023-04-15 08:03:18.011][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167491296.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167491268.xml"
biodb.DEBUG[2023-04-15 08:03:18.013][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:03:18.013][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2023-04-15 08:03:18.014][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:03:18.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:18.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:18.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:18.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:18.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:18.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:18.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:18.024][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:18.024][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:18.025][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.026][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:18.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:18.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.029][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:18.030][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:18.030][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.031][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:18.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:18.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.035][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:18.035][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:18.036][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.037][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:18.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:18.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.040][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:18.041][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:18.041][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.042][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:18.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:18.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.046][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:18.046][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:18.047][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.047][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:18.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:18.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.051][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:18.052][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:18.052][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.053][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:18.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:18.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.056][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:18.057][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:18.058][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.058][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.059][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:18.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:18.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.062][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:18.062][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:18.063][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.064][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.065][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:18.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:18.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.067][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:18.068][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:18.069][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.069][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:18.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:18.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.073][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:18.073][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:18.074][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.075][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:18.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:18.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.078][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:18.079][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:18.079][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.080][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.081][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:18.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:18.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.083][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:18.084][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:18.085][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.085][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:18.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:18.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.089][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:18.090][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:18.090][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.091][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.092][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:18.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:18.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.094][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:18.095][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:18.096][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.096][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:18.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:18.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.100][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:18.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:18.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:18.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:18.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:18.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:18.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.108][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:18.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:18.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:18.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:18.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:18.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:18.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.135][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:18.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:18.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:18.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:18.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:18.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:18.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.143][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:18.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:18.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:18.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:18.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:18.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:18.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.151][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:18.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:18.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:18.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:18.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:18.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:18.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.159][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:18.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:18.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:18.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:18.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:18.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:18.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:18.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:18.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:18.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:18.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:18.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:18.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:18.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:18.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:18.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:18.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:18.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:18.196][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:18.196][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:18.197][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.198][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:18.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:18.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.201][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:18.202][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:18.202][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.203][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:18.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:18.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.207][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:18.207][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:18.208][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.209][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:18.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:18.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.212][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:18.213][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:18.213][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.214][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:18.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:18.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.218][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:18.218][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:18.219][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.220][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:18.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:18.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.223][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:18.224][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:18.225][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.225][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:18.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:18.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.229][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:18.229][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:18.230][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.231][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.231][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:18.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:18.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.234][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:18.235][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:18.235][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.236][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.237][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:18.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:18.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.240][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:18.240][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:18.241][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.241][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:18.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:18.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.245][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:18.246][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:18.246][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.247][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:18.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:18.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.251][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:18.251][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:18.252][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.252][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.253][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:18.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:18.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.256][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:18.257][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:18.257][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.258][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:18.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:18.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.261][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:18.262][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:18.263][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.263][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.264][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:18.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:18.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.267][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:18.268][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:18.268][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.269][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.270][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:18.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:18.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.272][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:18.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:18.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:18.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:18.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:18.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:18.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.280][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:18.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:18.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:18.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:18.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:18.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:18.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.288][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:18.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:18.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:18.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:18.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:18.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:18.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.296][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:18.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:18.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:18.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:18.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:18.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:18.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.304][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:18.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:18.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:18.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:18.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:18.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:18.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.312][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:18.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:18.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:18.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:18.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:18.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:18.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:18.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:18.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:18.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:18.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:18.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:18.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:18.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:18.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:18.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:18.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:18.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:18.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:18.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:18.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:18.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:18.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:18.349][self$createEntryFromContent] Accession numbers: 167491296, 167491268.
biodb.DEBUG[2023-04-15 08:03:18.350][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:18.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:18.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:18.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:18.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:18.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:18.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:18.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:18.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.387][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.388][private$selectFields]
biodb.TRACE[2023-04-15 08:03:18.389][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:18.389][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:18.390][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.391][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.391][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.392][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.393][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.393][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.394][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.395][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.395][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.396][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.402][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.403][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.403][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.404][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.405][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.405][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:18.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.414][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167513889].
biodb.DEBUG[2023-04-15 08:03:18.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:18.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:18.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:18.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:18.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:18.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:18.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:18.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.427][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.428][private$selectFields]
biodb.TRACE[2023-04-15 08:03:18.429][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:18.429][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:18.430][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.431][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.431][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.432][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.433][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.433][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.434][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.435][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.435][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.436][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.437][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.437][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.438][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.439][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.439][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.440][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:18.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.446][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.454][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167491296].
biodb.DEBUG[2023-04-15 08:03:18.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:18.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:18.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:18.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:18.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:18.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:18.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:18.462][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.464][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.467][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.468][private$selectFields]
biodb.TRACE[2023-04-15 08:03:18.468][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:18.469][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:18.469][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.470][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.471][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.471][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.472][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.473][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.473][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.474][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.475][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.475][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.476][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.477][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.477][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.478][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.479][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.479][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:18.480][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.483][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.485][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.488][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167491268].
biodb.DEBUG[2023-04-15 08:03:18.489][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:18.489][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-04-15 08:03:18.494][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-04-15 08:03:18.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-04-15 08:03:18.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.497][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-04-15 08:03:18.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-04-15 08:03:18.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-15 08:03:18.501][biodb::testThat]
biodb.INFO [2023-04-15 08:03:18.501][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2023-04-15 08:03:18.502][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:03:18.503][biodb::testThat]
biodb.TRACE[2023-04-15 08:03:18.505][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-04-15 08:03:18.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-04-15 08:03:18.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.508][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-04-15 08:03:18.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-04-15 08:03:18.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:18.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:18.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:18.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:18.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:18.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:18.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:18.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:18.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:18.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:18.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:18.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:18.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:18.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:18.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:18.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:18.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:18.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:18.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:18.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:18.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:18.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:18.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:18.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:18.564][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:18.566][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:18.568][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2023-04-15 08:03:18.568][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:18.569][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2023-04-15 08:03:18.571][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:18.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:18.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:18.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:18.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:18.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:18.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:18.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:18.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.587][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.590][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.591][private$selectFields]
biodb.TRACE[2023-04-15 08:03:18.591][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:18.592][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:18.593][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.593][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.594][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.595][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.595][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.596][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.597][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.597][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.598][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.599][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.599][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.600][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.601][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.601][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.602][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.603][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:18.603][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.606][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.609][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.612][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529381].
biodb.DEBUG[2023-04-15 08:03:18.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:18.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:18.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:18.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:18.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:18.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:18.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:18.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.626][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.627][private$selectFields]
biodb.TRACE[2023-04-15 08:03:18.627][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:18.628][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:18.629][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.629][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.630][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.631][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.631][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.632][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.633][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.633][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.634][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.635][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.636][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.636][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.637][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.638][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.638][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.639][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:18.640][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.645][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.648][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167522372].
biodb.DEBUG[2023-04-15 08:03:18.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:18.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:18.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:18.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:18.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:18.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:18.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:18.656][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.659][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.662][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.663][private$selectFields]
biodb.TRACE[2023-04-15 08:03:18.663][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:18.664][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:18.665][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.665][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.666][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.667][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.667][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.668][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.669][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.669][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.670][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.671][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.671][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.672][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.673][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.673][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.674][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.675][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:18.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.681][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.684][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167522082].
biodb.DEBUG[2023-04-15 08:03:18.684][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:18.685][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:18.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:18.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:18.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:18.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:18.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:18.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:18.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:18.716][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:18.718][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:18.719][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2023-04-15 08:03:18.720][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:18.721][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2023-04-15 08:03:18.722][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:18.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:18.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:18.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:18.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:18.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:18.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:18.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:18.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.736][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.737][private$selectFields]
biodb.TRACE[2023-04-15 08:03:18.737][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:18.738][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:18.739][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.739][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.740][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.741][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.741][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.742][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.743][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.743][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.744][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.745][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.745][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.746][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.747][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.747][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.748][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.749][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:18.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.752][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.755][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.758][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167514507].
biodb.DEBUG[2023-04-15 08:03:18.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:18.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:18.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:18.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:18.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:18.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:18.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:18.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.772][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.773][private$selectFields]
biodb.TRACE[2023-04-15 08:03:18.773][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:18.774][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:18.775][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.775][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.776][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.777][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.777][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.778][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.779][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.779][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.780][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.781][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.781][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.782][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.783][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.783][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.784][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.785][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:18.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.793][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.799][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167491345].
biodb.DEBUG[2023-04-15 08:03:18.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:18.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:18.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:18.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:18.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:18.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:18.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:18.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.812][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.813][private$selectFields]
biodb.TRACE[2023-04-15 08:03:18.814][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:18.814][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:18.815][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.816][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.817][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.817][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.818][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.818][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.819][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.820][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.820][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.821][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.822][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.822][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.823][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.824][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.824][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.825][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:18.826][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.831][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.834][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167438444].
biodb.DEBUG[2023-04-15 08:03:18.835][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:18.836][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-04-15 08:03:18.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:18.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:18.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:18.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:18.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:18.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:18.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:18.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:18.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:18.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:18.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:18.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:18.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:18.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:18.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:18.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:18.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:18.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:18.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:18.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:18.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:18.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:18.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:18.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:18.905][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:18.908][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:18.910][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2023-04-15 08:03:18.911][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:18.912][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2023-04-15 08:03:18.913][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:18.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:18.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:18.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:18.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:18.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:18.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:18.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:18.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.929][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.930][private$selectFields]
biodb.TRACE[2023-04-15 08:03:18.931][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:18.931][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:18.932][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.933][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.934][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.934][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.935][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.936][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.936][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.937][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.938][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.938][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.939][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.940][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.941][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.941][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.942][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.943][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:18.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.946][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.952][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523845].
biodb.DEBUG[2023-04-15 08:03:18.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:18.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:18.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:18.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:18.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:18.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:18.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:18.961][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.964][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.967][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.967][private$selectFields]
biodb.TRACE[2023-04-15 08:03:18.968][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:18.969][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:18.969][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.970][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.971][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.971][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.972][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.973][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.973][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.974][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.975][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.975][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.976][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:18.977][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.978][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.978][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.979][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.980][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:18.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:18.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:18.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:18.990][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523844].
biodb.DEBUG[2023-04-15 08:03:18.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:18.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:18.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:18.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:18.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:18.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:18.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:18.998][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.019][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.022][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:19.023][private$selectFields]
biodb.TRACE[2023-04-15 08:03:19.023][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:19.024][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:19.025][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:19.025][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.026][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.027][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.027][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.028][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.029][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.030][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.030][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.031][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:19.032][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:19.032][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.033][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.034][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.034][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.035][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:19.036][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.038][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.041][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.044][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523841].
biodb.DEBUG[2023-04-15 08:03:19.044][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:19.045][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:19.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:19.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:19.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:19.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:19.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:19.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:19.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:19.076][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:19.078][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:19.079][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2023-04-15 08:03:19.080][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:19.081][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2023-04-15 08:03:19.082][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:19.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:19.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:19.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:19.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:19.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:19.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:19.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:19.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.094][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.096][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:19.097][private$selectFields]
biodb.TRACE[2023-04-15 08:03:19.098][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:19.098][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:19.099][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:19.100][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.100][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.101][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.102][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.102][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.103][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.104][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.104][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.105][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:19.106][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:19.106][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.107][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.108][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.108][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.109][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:19.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.115][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.118][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167527736].
biodb.DEBUG[2023-04-15 08:03:19.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:19.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:19.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:19.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:19.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:19.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:19.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:19.126][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.129][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.132][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:19.132][private$selectFields]
biodb.TRACE[2023-04-15 08:03:19.133][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:19.133][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:19.134][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:19.135][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.136][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.136][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.137][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.138][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.139][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.139][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.140][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.141][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:19.141][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:19.142][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.143][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.143][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.144][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.145][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:19.145][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.151][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.153][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167513889].
biodb.DEBUG[2023-04-15 08:03:19.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:19.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:19.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:19.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:19.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:19.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:19.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:19.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.167][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:19.167][private$selectFields]
biodb.TRACE[2023-04-15 08:03:19.168][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:19.169][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:19.169][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:19.170][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.171][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.171][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.172][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.173][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.173][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.174][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.175][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.175][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:19.176][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:19.177][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.177][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.178][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.179][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.179][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:19.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.186][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:19.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.188][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167510581].
biodb.DEBUG[2023-04-15 08:03:19.189][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:19.190][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-04-15 08:03:19.203][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-04-15 08:03:19.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-04-15 08:03:19.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.206][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-04-15 08:03:19.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-04-15 08:03:19.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.209][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:19.210][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:19.211][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.211][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.212][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:19.213][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:19.214][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.214][ef$get] fields variable is a list.
biodb.INFO [2023-04-15 08:03:19.216][biodb::testThat]
biodb.INFO [2023-04-15 08:03:19.221][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2023-04-15 08:03:19.221][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:03:19.222][biodb::testThat]
biodb.TRACE[2023-04-15 08:03:19.224][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-04-15 08:03:19.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-04-15 08:03:19.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.227][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-04-15 08:03:19.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-04-15 08:03:19.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:19.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:19.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:19.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:19.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:19.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:19.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:19.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:19.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:19.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:19.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:19.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:19.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:19.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:19.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:19.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:19.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:19.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:19.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:19.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:19.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:19.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:19.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:19.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:19.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:19.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:19.279][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:19.281][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:19.282][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:19.283][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2023-04-15 08:03:19.362][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:03:19.363][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:03:19.364][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:03:19.365][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:03:19.462][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:03:19.464][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content"
biodb.TRACE[2023-04-15 08:03:19.466][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.request"
biodb.DEBUG[2023-04-15 08:03:19.468][private$loadEntries] Creating entries from ids [3]: "83638281, 167531149, 167531046".
biodb.DEBUG[2023-04-15 08:03:19.469][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2023-04-15 08:03:19.470][cch$loadFileContent] Trying to load 3 files from cache: [3]: "83638281, 167531149, 167531046".
biodb.TRACE[2023-04-15 08:03:19.471][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2023-04-15 08:03:19.471][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:03:19.472][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:03:19.473][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:03:19.473][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:03:19.474][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-04-15 08:03:19.475][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2023-04-15 08:03:19.476][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/83638281,167531149,167531046/XML".
biodb.DEBUG[2023-04-15 08:03:19.478][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:19.478][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:19.479][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/83638281,167531149,167531046/XML".
biodb.TRACE[2023-04-15 08:03:20.018][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/83638281,167531149,167531046/XML).
biodb.TRACE[2023-04-15 08:03:20.714][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/83638281.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167531149.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167531046.xml"
biodb.DEBUG[2023-04-15 08:03:20.716][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:03:20.717][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2023-04-15 08:03:20.718][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:03:20.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:20.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:20.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:20.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:20.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:20.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:20.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:20.727][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:20.728][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:20.729][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.730][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:20.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:20.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.733][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:20.734][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:20.735][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.735][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:20.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:20.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.739][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:20.740][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:20.740][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.741][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:20.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:20.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.745][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:20.745][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:20.746][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.747][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:20.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:20.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.751][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:20.751][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:20.752][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.753][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:20.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:20.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.757][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:20.757][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:20.758][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.759][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:20.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:20.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.762][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:20.763][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:20.764][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.765][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.766][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:20.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:20.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.768][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:20.769][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:20.770][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.770][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.771][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:20.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:20.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.774][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:20.775][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:20.775][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.776][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:20.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:20.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.780][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:20.781][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:20.782][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.782][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:20.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:20.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.786][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:20.787][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:20.788][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.788][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.789][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:20.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:20.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.792][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:20.793][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:20.794][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.794][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:20.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:20.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.798][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:20.799][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:20.800][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.801][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.802][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:20.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:20.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.804][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:20.805][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:20.806][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.807][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.808][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:20.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:20.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.811][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:20.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:20.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:20.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:20.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:20.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:20.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.819][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:20.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:20.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:20.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:20.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:20.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:20.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.857][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:20.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:20.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:20.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:20.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:20.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:20.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.866][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:20.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:20.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:20.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:20.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:20.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:20.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.874][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:20.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:20.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:20.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:20.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:20.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:20.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.882][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:20.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:20.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:20.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:20.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:20.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:20.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:20.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:20.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.894][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:20.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:20.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:20.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:20.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:20.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:20.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:20.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:20.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:20.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:20.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:20.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:20.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:20.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:20.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:20.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:20.915][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:20.916][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:20.917][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.917][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:20.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:20.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.921][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:20.922][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:20.922][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.923][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:20.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:20.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.927][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:20.928][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:20.929][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.929][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:20.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:20.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.933][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:20.934][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:20.935][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.936][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:20.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:20.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.940][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:20.940][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:20.941][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.942][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:20.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:20.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.945][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:20.946][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:20.947][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.948][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:20.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:20.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.951][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:20.952][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:20.953][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.953][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.954][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:20.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:20.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.957][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:20.958][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:20.959][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.959][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.960][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:20.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:20.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.963][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:20.964][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:20.965][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.965][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:20.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:20.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.969][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:20.970][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:20.971][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.972][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:20.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:20.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.975][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:20.976][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:20.977][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.978][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.979][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:20.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:20.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.982][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:20.982][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:20.983][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.984][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:20.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:20.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.988][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:20.988][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:20.989][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.990][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.991][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:20.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:20.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.994][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:20.995][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:20.995][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.996][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:20.997][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:20.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:20.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:20.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.000][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:21.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:21.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:21.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:21.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:21.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:21.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.008][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:21.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:21.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:21.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:21.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:21.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:21.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.017][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:21.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:21.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:21.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:21.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:21.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:21.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.026][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:21.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:21.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:21.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:21.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:21.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:21.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.034][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:21.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:21.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:21.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:21.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:21.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:21.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.043][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:21.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:21.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:21.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:21.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:21.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:21.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:21.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:21.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:21.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:21.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:21.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:21.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:21.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:21.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:21.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:21.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:21.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:21.079][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:21.079][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:21.080][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.081][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:21.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:21.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.085][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:21.085][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:21.086][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.086][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:21.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:21.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.090][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:21.091][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:21.092][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.092][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:21.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:21.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.096][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:21.097][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:21.098][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.099][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:21.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:21.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.103][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:21.103][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:21.104][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.105][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:21.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:21.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.109][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:21.109][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:21.110][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.111][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.112][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:21.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:21.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.115][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:21.116][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:21.116][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.117][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.118][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:21.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:21.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.121][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:21.122][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:21.122][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.123][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.124][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:21.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:21.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.127][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:21.128][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:21.129][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.129][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:21.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:21.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.133][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:21.134][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:21.135][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.135][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:21.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:21.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.139][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:21.140][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:21.140][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.141][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.142][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:21.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:21.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.145][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:21.146][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:21.146][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.147][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:21.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:21.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.151][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:21.152][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:21.152][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.153][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.154][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:21.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:21.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.157][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:21.158][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:21.159][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.159][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.160][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:21.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:21.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.163][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:21.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:21.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:21.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:21.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:21.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:21.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.171][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:21.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:21.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:21.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:21.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:21.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:21.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.180][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:21.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:21.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:21.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:21.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:21.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:21.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.188][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:21.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:21.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:21.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:21.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:21.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:21.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.197][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:21.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:21.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:21.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:21.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:21.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:21.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.205][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:21.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:21.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.208][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:21.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:21.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.216][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:21.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:21.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:21.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:21.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:21.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:21.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:21.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:21.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:21.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:21.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:21.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:21.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:21.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:21.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:21.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:21.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:21.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:21.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:21.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:21.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:21.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:21.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:21.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:21.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:21.253][self$createEntryFromContent] Accession numbers: 83638281, 167531149, 167531046.
biodb.DEBUG[2023-04-15 08:03:21.254][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:21.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:21.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:21.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:21.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:21.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:21.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:21.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:21.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.270][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.273][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:21.274][private$selectFields]
biodb.TRACE[2023-04-15 08:03:21.275][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:21.275][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:21.276][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:21.277][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.277][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.278][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.279][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.279][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.280][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.281][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.281][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.282][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:21.283][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:21.283][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.284][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.285][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.285][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.286][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:21.287][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.292][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.300][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [83638281].
biodb.DEBUG[2023-04-15 08:03:21.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:21.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:21.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:21.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:21.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:21.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:21.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:21.309][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.314][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:21.315][private$selectFields]
biodb.TRACE[2023-04-15 08:03:21.316][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:21.316][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:21.317][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:21.318][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.318][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.319][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.320][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.320][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.321][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.322][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.322][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.323][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:21.324][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:21.325][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.325][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.326][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.327][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.327][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:21.328][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.331][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.337][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167531149].
biodb.DEBUG[2023-04-15 08:03:21.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:21.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:21.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:21.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:21.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:21.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:21.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:21.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.349][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.351][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:21.352][private$selectFields]
biodb.TRACE[2023-04-15 08:03:21.353][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:21.353][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:21.354][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:21.355][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.356][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.356][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.357][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.358][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.359][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.359][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.360][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.361][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:21.361][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:21.362][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.363][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.363][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.364][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.365][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:21.366][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:21.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:21.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:21.374][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167531046].
biodb.DEBUG[2023-04-15 08:03:21.375][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:21.376][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:21.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:21.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:21.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:21.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:21.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:21.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:21.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:21.407][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:21.409][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:21.410][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:21.411][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2023-04-15 08:03:21.489][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:03:21.490][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:03:21.491][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:03:21.492][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:03:21.594][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:03:21.596][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content"
biodb.TRACE[2023-04-15 08:03:21.599][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.request"
biodb.DEBUG[2023-04-15 08:03:21.601][private$loadEntries] Creating entries from ids [2]: "167523198, 167522153".
biodb.DEBUG[2023-04-15 08:03:21.601][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2023-04-15 08:03:21.602][cch$loadFileContent] Trying to load 2 files from cache: [2]: "167523198, 167522153".
biodb.TRACE[2023-04-15 08:03:21.603][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2023-04-15 08:03:21.604][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:03:21.605][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:03:21.606][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:03:21.606][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:03:21.607][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-04-15 08:03:21.608][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2023-04-15 08:03:21.609][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167523198,167522153/XML".
biodb.DEBUG[2023-04-15 08:03:21.611][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:21.611][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:21.613][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167523198,167522153/XML".
biodb.TRACE[2023-04-15 08:03:21.955][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167523198,167522153/XML).
biodb.TRACE[2023-04-15 08:03:22.288][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167523198.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167522153.xml"
biodb.DEBUG[2023-04-15 08:03:22.290][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:03:22.291][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2023-04-15 08:03:22.292][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:03:22.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:22.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:22.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:22.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:22.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:22.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:22.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:22.302][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:22.303][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:22.303][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.304][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:22.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:22.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.308][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:22.308][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:22.309][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.310][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:22.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:22.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.313][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:22.314][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:22.315][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.315][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.316][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:22.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:22.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.327][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:22.328][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:22.329][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.329][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:22.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:22.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.333][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:22.334][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:22.334][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.335][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:22.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:22.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.339][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:22.339][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:22.340][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.341][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:22.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:22.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.344][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:22.345][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:22.346][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.346][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.347][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:22.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:22.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.350][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:22.350][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:22.351][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.352][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.353][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:22.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:22.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.355][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:22.356][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:22.357][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.357][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:22.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:22.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.361][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:22.362][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:22.362][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.363][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:22.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:22.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.366][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:22.367][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:22.368][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.368][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.369][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:22.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:22.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.372][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:22.373][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:22.373][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.374][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:22.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:22.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.377][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:22.378][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:22.379][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.379][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.380][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:22.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:22.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.383][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:22.384][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:22.384][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.385][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.386][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:22.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:22.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.389][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:22.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:22.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:22.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:22.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:22.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:22.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.397][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:22.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:22.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:22.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:22.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:22.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:22.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.425][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:22.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:22.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:22.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:22.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:22.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:22.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.433][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:22.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:22.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:22.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:22.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:22.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:22.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.441][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:22.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:22.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:22.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:22.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:22.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:22.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.449][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:22.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:22.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.452][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.455][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:22.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:22.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.460][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:22.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:22.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:22.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:22.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:22.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:22.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:22.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:22.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:22.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:22.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:22.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:22.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:22.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:22.480][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:22.480][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:22.481][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.482][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:22.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:22.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.485][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:22.486][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:22.487][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.487][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:22.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:22.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.491][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:22.492][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:22.493][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.493][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:22.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:22.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.497][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:22.498][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:22.498][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.499][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:22.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:22.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.503][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:22.503][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:22.504][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.505][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:22.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:22.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.508][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:22.509][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:22.510][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.510][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:22.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:22.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.514][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:22.515][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:22.515][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.516][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.517][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:22.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:22.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.524][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:22.525][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:22.526][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.526][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.527][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:22.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:22.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.530][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:22.531][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:22.531][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.532][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:22.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:22.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.535][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:22.536][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:22.537][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.537][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.538][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:22.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:22.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.541][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:22.542][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:22.543][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.543][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.544][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:22.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:22.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.547][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:22.548][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:22.548][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.549][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:22.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:22.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.553][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:22.554][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:22.554][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.555][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.556][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:22.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:22.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.559][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:22.559][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:22.560][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.561][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.562][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:22.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:22.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.564][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:22.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:22.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:22.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:22.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.570][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:22.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:22.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.573][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:22.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:22.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:22.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:22.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:22.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:22.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.581][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:22.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:22.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:22.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:22.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:22.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:22.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.589][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:22.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:22.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:22.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:22.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:22.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:22.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.597][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:22.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:22.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:22.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:22.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:22.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:22.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.606][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:22.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:22.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.609][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:22.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:22.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:22.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:22.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:22.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:22.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:22.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:22.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:22.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:22.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:22.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:22.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:22.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:22.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:22.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:22.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:22.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:22.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:22.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:22.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:22.645][self$createEntryFromContent] Accession numbers: 167523198, 167522153.
biodb.DEBUG[2023-04-15 08:03:22.645][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:22.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:22.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:22.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:22.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:22.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:22.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:22.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:22.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.657][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.660][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.660][private$selectFields]
biodb.TRACE[2023-04-15 08:03:22.661][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:22.661][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:22.662][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.663][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.664][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.664][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.665][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.665][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.666][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.667][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.667][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.668][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.669][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.669][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.670][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.671][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.672][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.672][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:22.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.676][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.687][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523198].
biodb.DEBUG[2023-04-15 08:03:22.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:22.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:22.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:22.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:22.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:22.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:22.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:22.695][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.700][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.701][private$selectFields]
biodb.TRACE[2023-04-15 08:03:22.702][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:22.702][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:22.703][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.704][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.705][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.705][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.706][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.707][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.707][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.708][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.709][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.709][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.710][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.711][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.711][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.712][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.713][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.713][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:22.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.727][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167522153].
biodb.DEBUG[2023-04-15 08:03:22.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:22.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:22.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:22.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:22.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:22.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:22.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:22.735][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.741][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.741][private$selectFields]
biodb.TRACE[2023-04-15 08:03:22.742][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:22.743][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:22.743][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.744][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.745][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.745][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.746][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.747][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.747][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.748][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.749][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.749][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.750][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.751][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.751][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.752][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.752][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.753][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:22.754][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.762][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167514507].
biodb.DEBUG[2023-04-15 08:03:22.763][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:22.764][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:22.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:22.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:22.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:22.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:22.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:22.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:22.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:22.805][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:22.807][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:22.808][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2023-04-15 08:03:22.809][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:22.810][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2023-04-15 08:03:22.811][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:22.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:22.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:22.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:22.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:22.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:22.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:22.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:22.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.826][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.826][private$selectFields]
biodb.TRACE[2023-04-15 08:03:22.827][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:22.828][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:22.828][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.829][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.830][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.830][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.831][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.832][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.832][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.833][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.834][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.834][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.835][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.836][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.836][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.837][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.838][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.838][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:22.839][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.847][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529381].
biodb.DEBUG[2023-04-15 08:03:22.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:22.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:22.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:22.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:22.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:22.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:22.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:22.856][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.861][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.862][private$selectFields]
biodb.TRACE[2023-04-15 08:03:22.862][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:22.863][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:22.864][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.864][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.865][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.866][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.866][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.867][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.868][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.868][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.869][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.870][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.870][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.871][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.872][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.872][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.873][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.874][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:22.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.877][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.880][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.883][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167522372].
biodb.DEBUG[2023-04-15 08:03:22.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:22.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:22.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:22.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:22.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:22.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:22.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:22.891][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.894][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.896][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.897][private$selectFields]
biodb.TRACE[2023-04-15 08:03:22.898][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:22.898][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:22.899][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.899][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.900][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.901][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.901][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.902][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.903][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.903][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.904][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.905][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.905][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.906][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.907][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.907][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.908][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.909][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:22.909][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.912][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.915][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.918][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167522082].
biodb.DEBUG[2023-04-15 08:03:22.918][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:22.919][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:22.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:22.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:22.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:22.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:22.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:22.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:22.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:22.952][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:22.954][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:22.955][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2023-04-15 08:03:22.956][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:22.957][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2023-04-15 08:03:22.958][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:22.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:22.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:22.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:22.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:22.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:22.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:22.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:22.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.972][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.973][private$selectFields]
biodb.TRACE[2023-04-15 08:03:22.973][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:22.974][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:22.974][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.975][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.976][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.976][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.977][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.978][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.979][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.979][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.980][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.980][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.981][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:22.982][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.982][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.983][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.984][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.984][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:22.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:22.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:22.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:22.993][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167514507].
biodb.DEBUG[2023-04-15 08:03:22.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:22.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:22.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:22.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:22.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:23.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:23.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:23.002][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.007][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:23.008][private$selectFields]
biodb.TRACE[2023-04-15 08:03:23.008][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:23.009][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:23.010][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:23.010][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.011][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.012][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.013][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.013][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.014][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.015][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.015][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.016][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:23.017][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:23.017][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.018][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.019][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.020][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.020][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:23.021][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.030][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167491345].
biodb.DEBUG[2023-04-15 08:03:23.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:23.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:23.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:23.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:23.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:23.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:23.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:23.038][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.041][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.044][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:23.045][private$selectFields]
biodb.TRACE[2023-04-15 08:03:23.045][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:23.046][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:23.047][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:23.047][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.048][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.049][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.049][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.050][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.051][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.052][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.052][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.053][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:23.054][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:23.054][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.055][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.056][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.056][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.057][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:23.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.060][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.066][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167438444].
biodb.DEBUG[2023-04-15 08:03:23.067][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:23.067][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:23.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:23.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:23.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:23.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:23.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:23.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:23.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:23.111][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:23.113][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:23.114][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:23.116][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2023-04-15 08:03:23.191][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:03:23.192][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:03:23.193][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:03:23.194][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:03:23.291][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:03:23.299][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content"
biodb.TRACE[2023-04-15 08:03:23.301][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.request"
biodb.DEBUG[2023-04-15 08:03:23.304][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:23.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:23.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:23.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:23.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:23.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:23.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:23.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:23.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.315][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.318][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:23.319][private$selectFields]
biodb.TRACE[2023-04-15 08:03:23.319][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:23.320][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:23.321][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:23.321][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.322][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.323][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.324][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.324][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.325][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.326][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.326][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.327][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:23.328][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:23.328][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.329][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.330][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.330][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.331][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:23.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.337][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.340][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529381].
biodb.DEBUG[2023-04-15 08:03:23.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:23.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:23.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:23.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:23.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:23.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:23.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:23.348][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.351][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.353][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:23.354][private$selectFields]
biodb.TRACE[2023-04-15 08:03:23.355][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:23.355][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:23.356][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:23.357][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.357][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.358][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.359][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.359][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.360][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.361][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.361][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.362][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:23.363][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:23.363][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.364][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.365][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.365][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.366][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:23.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.375][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523845].
biodb.DEBUG[2023-04-15 08:03:23.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:23.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:23.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:23.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:23.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:23.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:23.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:23.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.385][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.388][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:23.389][private$selectFields]
biodb.TRACE[2023-04-15 08:03:23.389][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:23.390][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:23.391][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:23.391][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.392][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.393][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.394][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.394][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.395][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.396][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.396][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.397][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:23.398][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:23.398][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.399][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.400][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.400][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.401][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:23.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.407][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:23.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:23.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:23.410][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523844].
biodb.DEBUG[2023-04-15 08:03:23.411][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:23.412][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:23.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:23.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:23.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:23.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:23.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:23.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:23.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:23.442][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:23.445][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:23.445][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:23.447][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2023-04-15 08:03:23.524][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:03:23.525][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:03:23.526][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:03:23.527][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:03:23.627][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:03:23.629][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content"
biodb.TRACE[2023-04-15 08:03:23.632][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.request"
biodb.DEBUG[2023-04-15 08:03:23.634][private$loadEntries] Creating entries from ids [3]: "167529602, 167529523, 167529363".
biodb.DEBUG[2023-04-15 08:03:23.634][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2023-04-15 08:03:23.635][cch$loadFileContent] Trying to load 3 files from cache: [3]: "167529602, 167529523, 167529363".
biodb.TRACE[2023-04-15 08:03:23.636][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2023-04-15 08:03:23.637][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:03:23.638][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:03:23.639][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:03:23.639][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:03:23.640][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-04-15 08:03:23.641][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2023-04-15 08:03:23.642][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167529602,167529523,167529363/XML".
biodb.DEBUG[2023-04-15 08:03:23.644][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:23.645][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:23.646][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167529602,167529523,167529363/XML".
biodb.TRACE[2023-04-15 08:03:23.800][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167529602,167529523,167529363/XML).
biodb.TRACE[2023-04-15 08:03:24.003][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167529602.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167529523.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167529363.xml"
biodb.DEBUG[2023-04-15 08:03:24.005][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:03:24.006][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2023-04-15 08:03:24.007][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:03:24.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:24.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:24.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:24.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:24.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:24.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:24.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:24.017][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:24.018][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:24.018][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.019][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:24.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:24.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.023][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:24.023][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:24.024][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.025][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:24.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:24.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.028][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:24.029][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:24.030][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.030][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:24.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:24.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.043][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:24.043][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:24.044][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.045][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:24.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:24.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.048][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:24.049][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:24.050][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.050][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:24.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:24.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.054][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:24.055][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:24.055][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.056][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:24.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:24.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.060][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:24.060][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:24.061][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.062][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.063][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:24.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:24.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.065][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:24.066][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:24.067][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.067][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.068][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:24.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:24.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.071][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:24.072][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:24.072][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.073][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:24.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:24.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.077][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:24.077][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:24.078][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.079][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:24.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:24.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.082][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:24.083][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:24.084][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.084][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.085][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:24.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:24.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.088][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:24.089][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:24.089][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.090][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:24.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:24.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.094][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:24.095][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:24.095][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.096][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:24.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:24.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.099][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:24.100][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:24.101][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.102][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.102][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:24.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:24.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.105][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:24.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:24.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:24.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:24.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:24.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:24.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.114][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:24.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:24.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:24.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:24.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:24.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:24.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.143][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:24.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:24.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:24.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:24.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:24.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:24.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.151][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:24.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:24.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:24.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:24.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:24.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:24.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.160][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:24.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:24.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:24.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:24.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:24.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:24.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.168][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:24.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:24.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.171][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:24.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:24.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:24.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:24.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:24.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:24.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:24.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:24.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:24.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:24.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:24.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:24.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:24.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:24.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:24.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:24.201][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:24.201][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:24.202][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.203][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:24.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:24.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.207][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:24.207][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:24.208][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.209][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:24.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:24.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.213][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:24.214][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:24.214][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.215][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:24.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:24.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.219][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:24.220][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:24.221][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.221][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:24.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:24.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.225][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:24.226][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:24.227][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.227][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:24.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:24.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.231][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:24.232][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:24.233][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.233][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:24.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:24.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.237][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:24.243][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:24.244][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.245][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.246][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:24.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:24.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.248][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:24.249][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:24.250][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.251][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.252][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:24.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:24.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.255][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:24.255][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:24.256][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.257][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:24.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:24.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.261][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:24.261][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:24.262][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.263][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:24.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:24.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.267][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:24.268][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:24.268][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.269][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.270][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:24.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:24.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.273][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:24.274][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:24.274][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.275][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:24.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:24.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.279][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:24.280][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:24.281][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.281][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.282][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:24.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:24.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.285][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:24.286][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:24.286][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.287][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.288][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:24.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:24.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.291][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:24.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:24.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:24.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:24.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:24.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:24.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.300][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:24.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:24.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:24.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:24.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:24.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:24.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.308][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:24.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:24.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:24.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:24.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:24.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:24.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.316][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:24.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:24.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:24.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:24.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:24.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:24.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.325][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:24.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:24.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:24.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:24.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:24.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:24.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.333][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:24.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:24.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.336][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.338][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:24.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:24.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.344][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:24.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:24.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:24.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:24.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:24.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:24.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:24.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:24.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:24.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:24.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:24.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:24.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:24.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:24.364][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:24.365][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:24.366][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.366][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:24.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:24.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.370][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:24.371][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:24.372][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.372][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:24.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:24.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.376][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:24.377][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:24.378][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.378][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:24.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:24.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.382][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:24.383][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:24.384][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.384][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:24.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:24.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.388][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:24.389][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:24.390][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.391][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:24.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:24.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.394][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:24.395][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:24.396][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.397][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:24.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:24.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.401][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:24.401][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:24.402][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.403][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.404][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:24.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:24.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.407][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:24.407][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:24.408][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.409][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.410][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:24.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:24.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.413][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:24.413][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:24.414][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.415][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:24.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:24.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.418][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:24.419][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:24.420][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.420][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:24.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:24.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.424][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:24.425][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:24.426][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.426][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.427][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:24.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:24.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.430][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:24.431][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:24.431][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.432][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:24.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:24.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.436][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:24.437][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:24.437][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.438][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.439][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:24.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:24.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.442][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:24.443][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:24.443][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.444][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.445][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:24.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:24.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.448][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:24.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:24.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:24.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:24.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:24.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:24.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.461][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:24.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:24.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:24.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:24.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:24.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:24.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.469][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:24.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:24.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:24.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:24.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:24.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:24.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.477][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:24.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:24.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:24.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:24.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:24.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:24.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.486][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:24.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:24.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:24.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:24.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:24.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:24.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.494][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:24.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:24.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:24.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:24.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:24.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:24.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:24.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:24.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:24.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:24.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:24.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:24.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:24.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:24.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:24.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:24.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:24.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:24.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:24.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:24.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:24.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:24.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:24.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:24.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:24.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:24.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:24.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:24.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:24.540][self$createEntryFromContent] Accession numbers: 167529602, 167529523, 167529363.
biodb.DEBUG[2023-04-15 08:03:24.541][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:24.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:24.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:24.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:24.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:24.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:24.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:24.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:24.550][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.553][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.556][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.556][private$selectFields]
biodb.TRACE[2023-04-15 08:03:24.557][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:24.558][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:24.558][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.559][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.560][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.560][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.561][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.562][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.562][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.563][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.564][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.565][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.565][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.566][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.567][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.567][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.568][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.569][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:24.569][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.572][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.583][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529602].
biodb.DEBUG[2023-04-15 08:03:24.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:24.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:24.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:24.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:24.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:24.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:24.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:24.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.595][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.597][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.598][private$selectFields]
biodb.TRACE[2023-04-15 08:03:24.599][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:24.599][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:24.600][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.601][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.601][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.602][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.603][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.603][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.604][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.605][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.606][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.606][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.607][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.608][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.609][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.609][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.610][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.611][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:24.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.614][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.620][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529523].
biodb.DEBUG[2023-04-15 08:03:24.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:24.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:24.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:24.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:24.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:24.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:24.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:24.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.631][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.634][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.635][private$selectFields]
biodb.TRACE[2023-04-15 08:03:24.635][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:24.636][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:24.637][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.637][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.638][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.639][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.640][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.640][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.641][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.642][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.642][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.643][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.644][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.644][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.645][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.646][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.647][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.647][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:24.648][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.657][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529363].
biodb.DEBUG[2023-04-15 08:03:24.662][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:24.663][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:24.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:24.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:24.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:24.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:24.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:24.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:24.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:24.705][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:24.707][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:24.708][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9701d2e1a6b096cdfd56943877648611".
biodb.TRACE[2023-04-15 08:03:24.709][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:24.710][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content".
biodb.DEBUG[2023-04-15 08:03:24.711][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:24.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:24.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:24.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:24.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:24.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:24.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:24.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:24.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.725][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.726][private$selectFields]
biodb.TRACE[2023-04-15 08:03:24.727][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:24.728][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:24.728][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.729][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.730][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.730][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.731][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.732][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.733][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.733][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.734][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.735][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.735][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.736][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.737][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.737][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.738][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.739][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:24.740][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.749][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [83638281].
biodb.DEBUG[2023-04-15 08:03:24.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:24.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:24.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:24.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:24.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:24.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:24.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:24.758][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.761][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.764][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.764][private$selectFields]
biodb.TRACE[2023-04-15 08:03:24.765][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:24.766][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:24.766][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.767][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.768][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.769][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.769][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.770][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.771][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.772][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.772][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.773][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.774][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.775][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.775][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.776][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.777][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.777][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:24.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.787][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167531149].
biodb.DEBUG[2023-04-15 08:03:24.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:24.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:24.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:24.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:24.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:24.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:24.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:24.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.799][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.802][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.803][private$selectFields]
biodb.TRACE[2023-04-15 08:03:24.804][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:24.804][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:24.805][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.806][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.806][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.807][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.808][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.809][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.809][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.810][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.811][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.811][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.812][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.813][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.814][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.814][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.815][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.816][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:24.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.822][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.826][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167531046].
biodb.DEBUG[2023-04-15 08:03:24.826][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:24.827][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:24.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:24.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:24.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:24.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:24.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:24.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:24.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:24.859][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:24.862][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:24.863][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ce15c6e17e9ed97ba06e918ccdf7a5ba".
biodb.TRACE[2023-04-15 08:03:24.864][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:24.865][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content".
biodb.DEBUG[2023-04-15 08:03:24.866][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:24.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:24.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:24.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:24.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:24.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:24.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:24.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:24.880][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.886][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.886][private$selectFields]
biodb.TRACE[2023-04-15 08:03:24.887][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:24.888][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:24.888][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.889][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.890][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.891][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.891][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.892][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.893][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.894][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.894][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.895][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.896][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.896][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.897][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.898][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.899][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.899][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:24.900][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.906][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.909][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523198].
biodb.DEBUG[2023-04-15 08:03:24.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:24.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:24.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:24.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:24.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:24.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:24.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:24.918][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.920][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.923][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.924][private$selectFields]
biodb.TRACE[2023-04-15 08:03:24.925][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:24.925][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:24.926][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.927][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.927][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.928][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.929][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.930][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.930][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.931][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.932][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.933][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.933][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.934][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.935][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.935][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.936][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.937][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:24.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.941][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.947][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167522153].
biodb.DEBUG[2023-04-15 08:03:24.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:24.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:24.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:24.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:24.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:24.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:24.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:24.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.961][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.961][private$selectFields]
biodb.TRACE[2023-04-15 08:03:24.962][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:24.963][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:24.963][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.964][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.965][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.966][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.966][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.967][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.968][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.968][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.969][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.970][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.971][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:24.971][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.972][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.973][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.973][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.974][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:24.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:24.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:24.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:24.983][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167514507].
biodb.DEBUG[2023-04-15 08:03:24.984][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:24.985][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:24.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:25.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:25.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:25.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:25.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:25.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:25.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:25.029][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:25.031][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:25.032][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2023-04-15 08:03:25.033][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:25.034][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2023-04-15 08:03:25.035][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:25.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:25.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:25.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:25.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:25.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:25.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:25.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:25.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.047][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.050][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.050][private$selectFields]
biodb.TRACE[2023-04-15 08:03:25.051][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:25.052][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:25.052][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.053][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.054][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.054][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.055][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.056][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.056][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.057][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.058][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.059][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.059][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.060][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.061][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.061][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.062][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.063][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:25.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.066][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.069][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.072][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529381].
biodb.DEBUG[2023-04-15 08:03:25.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:25.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:25.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:25.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:25.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:25.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:25.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:25.085][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.091][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.091][private$selectFields]
biodb.TRACE[2023-04-15 08:03:25.092][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:25.093][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:25.094][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.094][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.095][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.096][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.096][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.097][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.098][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.098][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.099][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.100][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.100][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.101][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.102][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.102][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.103][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.104][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:25.105][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.113][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167522372].
biodb.DEBUG[2023-04-15 08:03:25.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:25.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:25.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:25.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:25.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:25.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:25.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:25.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.127][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.127][private$selectFields]
biodb.TRACE[2023-04-15 08:03:25.128][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:25.129][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:25.130][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.130][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.131][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.132][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.132][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.133][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.134][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.134][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.135][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.136][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.136][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.137][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.138][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.139][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.139][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.140][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:25.141][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.149][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167522082].
biodb.DEBUG[2023-04-15 08:03:25.150][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:25.151][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:25.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:25.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:25.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:25.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:25.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:25.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:25.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:25.182][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:25.185][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:25.186][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2023-04-15 08:03:25.187][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:25.188][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2023-04-15 08:03:25.189][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:25.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:25.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:25.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:25.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:25.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:25.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:25.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:25.199][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.205][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.206][private$selectFields]
biodb.TRACE[2023-04-15 08:03:25.206][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:25.207][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:25.208][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.208][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.209][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.210][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.211][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.211][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.212][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.213][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.214][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.214][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.215][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.216][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.216][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.217][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.218][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.219][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:25.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.222][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.228][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167514507].
biodb.DEBUG[2023-04-15 08:03:25.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:25.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:25.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:25.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:25.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:25.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:25.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:25.237][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.240][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.242][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.243][private$selectFields]
biodb.TRACE[2023-04-15 08:03:25.244][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:25.245][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:25.245][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.246][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.247][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.248][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.248][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.249][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.250][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.250][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.251][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.252][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.253][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.253][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.254][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.255][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.255][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.256][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:25.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.260][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.262][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.266][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167491345].
biodb.DEBUG[2023-04-15 08:03:25.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:25.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:25.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:25.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:25.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:25.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:25.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:25.275][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.280][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.281][private$selectFields]
biodb.TRACE[2023-04-15 08:03:25.282][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:25.282][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:25.283][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.284][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.284][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.285][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.290][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.291][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.292][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.293][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.293][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.294][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.295][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.296][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.296][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.297][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.298][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.298][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:25.299][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.302][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.308][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167438444].
biodb.DEBUG[2023-04-15 08:03:25.308][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:25.309][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:25.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:25.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:25.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:25.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:25.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:25.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:25.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:25.353][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:25.355][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:25.356][cch$loadFileContent] Trying to load 1 files from cache: [1]: "897c6c1cf86bb233833a030ee6928dbf".
biodb.TRACE[2023-04-15 08:03:25.357][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:25.358][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content".
biodb.DEBUG[2023-04-15 08:03:25.360][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:25.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:25.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:25.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:25.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:25.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:25.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:25.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:25.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.374][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.375][private$selectFields]
biodb.TRACE[2023-04-15 08:03:25.375][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:25.376][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:25.377][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.377][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.378][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.379][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.379][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.380][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.381][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.382][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.382][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.383][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.384][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.384][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.385][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.386][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.386][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.387][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:25.388][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.391][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.393][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.396][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529381].
biodb.DEBUG[2023-04-15 08:03:25.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:25.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:25.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:25.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:25.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:25.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:25.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:25.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.411][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.411][private$selectFields]
biodb.TRACE[2023-04-15 08:03:25.412][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:25.413][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:25.413][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.414][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.415][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.416][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.416][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.417][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.418][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.419][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.419][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.420][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.421][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.421][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.422][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.423][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.423][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.424][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:25.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.428][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.434][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523845].
biodb.DEBUG[2023-04-15 08:03:25.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:25.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:25.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:25.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:25.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:25.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:25.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:25.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.448][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.449][private$selectFields]
biodb.TRACE[2023-04-15 08:03:25.450][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:25.450][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:25.451][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.452][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.452][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.453][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.454][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.454][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.455][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.456][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.456][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.457][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.458][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.458][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.459][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.460][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.460][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.461][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:25.462][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.465][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.470][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523844].
biodb.DEBUG[2023-04-15 08:03:25.471][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:25.472][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:25.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:25.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:25.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:25.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:25.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:25.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:25.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:25.507][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:25.509][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:25.510][cch$loadFileContent] Trying to load 1 files from cache: [1]: "56a93d3214bbb5417ad13002a40518e8".
biodb.TRACE[2023-04-15 08:03:25.511][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:25.512][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content".
biodb.DEBUG[2023-04-15 08:03:25.513][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:25.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:25.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:25.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:25.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:25.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:25.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:25.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:25.521][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.526][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.527][private$selectFields]
biodb.TRACE[2023-04-15 08:03:25.528][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:25.528][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:25.529][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.530][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.530][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.531][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.532][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.532][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.533][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.534][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.534][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.535][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.536][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.536][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.537][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.538][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.538][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.539][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:25.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.545][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.548][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529602].
biodb.DEBUG[2023-04-15 08:03:25.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:25.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:25.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:25.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:25.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:25.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:25.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:25.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.561][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.562][private$selectFields]
biodb.TRACE[2023-04-15 08:03:25.562][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:25.563][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:25.564][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.564][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.565][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.566][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.566][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.567][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.568][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.568][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.569][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.570][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.570][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.571][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.572][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.572][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.573][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.573][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:25.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.577][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.583][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529523].
biodb.DEBUG[2023-04-15 08:03:25.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:25.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:25.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:25.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:25.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:25.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:25.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:25.591][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.597][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.598][private$selectFields]
biodb.TRACE[2023-04-15 08:03:25.598][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:25.599][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:25.600][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.600][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.601][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.602][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.602][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.603][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.604][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.605][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.605][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.606][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.607][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:25.607][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.608][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.609][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.609][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.610][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:25.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.614][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.616][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:25.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.619][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529363].
biodb.DEBUG[2023-04-15 08:03:25.620][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:25.621][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-04-15 08:03:25.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:25.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:25.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:25.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:25.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:25.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:25.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:25.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:25.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:25.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:25.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:25.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:25.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:25.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:25.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:25.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:25.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:25.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:25.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:25.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:25.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:25.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:25.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:25.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:25.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:25.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:25.690][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:25.692][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:25.693][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:25.695][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2023-04-15 08:03:25.777][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:03:25.777][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:03:25.779][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:03:25.780][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:03:26.026][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:03:26.027][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content"
biodb.TRACE[2023-04-15 08:03:26.030][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.request"
biodb.DEBUG[2023-04-15 08:03:26.031][private$loadEntries] Creating entries from ids [1]: "167531353".
biodb.DEBUG[2023-04-15 08:03:26.032][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-15 08:03:26.033][cch$loadFileContent] Trying to load 1 files from cache: [1]: "167531353".
biodb.TRACE[2023-04-15 08:03:26.034][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-04-15 08:03:26.035][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:03:26.035][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:03:26.036][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:03:26.037][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:03:26.037][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-04-15 08:03:26.038][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2023-04-15 08:03:26.039][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167531353/XML".
biodb.DEBUG[2023-04-15 08:03:26.041][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:26.041][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:26.042][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167531353/XML".
biodb.TRACE[2023-04-15 08:03:26.174][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167531353/XML).
biodb.TRACE[2023-04-15 08:03:26.307][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167531353.xml"
biodb.DEBUG[2023-04-15 08:03:26.308][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:03:26.309][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:03:26.310][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:03:26.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:26.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:26.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:26.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:26.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:26.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:26.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:26.319][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:26.320][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:26.321][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.322][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:26.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:26.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.325][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:26.326][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:26.327][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.327][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:26.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:26.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.331][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:26.332][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:26.332][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.333][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:26.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:26.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.336][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:26.337][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:26.338][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.338][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:26.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:26.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.342][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:26.343][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:26.343][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.344][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:26.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:26.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.348][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:26.348][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:26.349][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.350][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:26.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:26.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.353][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:26.354][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:26.355][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.355][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.356][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:26.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:26.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.359][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:26.360][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:26.360][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.361][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.362][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:26.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:26.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.364][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:26.365][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:26.366][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.366][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:26.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:26.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.370][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:26.371][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:26.371][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.372][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:26.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:26.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.376][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:26.376][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:26.377][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.378][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.379][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:26.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:26.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.381][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:26.382][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:26.383][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.383][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:26.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:26.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.387][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:26.388][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:26.388][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.389][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.390][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:26.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:26.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.393][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:26.393][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:26.394][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.395][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.396][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:26.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:26.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.398][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:26.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:26.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.401][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:26.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:26.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:26.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:26.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.407][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:26.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:26.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:26.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:26.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:26.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:26.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.435][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:26.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:26.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:26.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:26.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:26.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:26.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.443][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:26.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:26.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:26.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:26.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:26.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:26.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.451][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:26.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:26.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:26.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:26.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:26.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:26.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.459][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:26.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:26.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.462][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.464][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:26.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:26.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.470][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:26.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:26.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:26.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:26.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:26.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:26.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:26.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:26.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:26.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:26.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:26.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:26.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:26.496][self$createEntryFromContent] Accession numbers: 167531353.
biodb.DEBUG[2023-04-15 08:03:26.497][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:26.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:26.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:26.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:26.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:26.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:26.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:26.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:26.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.511][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:26.511][private$selectFields]
biodb.TRACE[2023-04-15 08:03:26.512][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:26.512][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:26.513][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:26.514][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.514][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.515][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.516][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.516][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.517][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.518][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.518][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.519][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:26.520][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:26.520][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.521][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.521][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.522][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.523][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:26.523][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.526][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.529][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.537][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167531353].
biodb.DEBUG[2023-04-15 08:03:26.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:26.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:26.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:26.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:26.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:26.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:26.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:26.545][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.547][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.550][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:26.551][private$selectFields]
biodb.TRACE[2023-04-15 08:03:26.551][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:26.552][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:26.553][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:26.553][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.554][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.555][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.555][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.556][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.557][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.557][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.558][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.559][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:26.559][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:26.560][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.561][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.561][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.562][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.563][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:26.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.566][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.569][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.572][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [83638281].
biodb.DEBUG[2023-04-15 08:03:26.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:26.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:26.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:26.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:26.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:26.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:26.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:26.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.585][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:26.586][private$selectFields]
biodb.TRACE[2023-04-15 08:03:26.586][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:26.587][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:26.587][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:26.588][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.589][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.590][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.590][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.591][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.591][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.592][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.593][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.593][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:26.594][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:26.595][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.595][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.596][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.597][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.597][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:26.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.603][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:26.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:26.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:26.606][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167531149].
biodb.DEBUG[2023-04-15 08:03:26.607][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:26.608][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:26.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:26.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:26.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:26.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:26.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:26.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:26.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:26.638][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:26.640][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:26.641][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:26.642][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2023-04-15 08:03:26.718][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:03:26.719][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:03:26.720][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:03:26.721][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:03:26.849][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:03:26.851][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content"
biodb.TRACE[2023-04-15 08:03:26.854][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.request"
biodb.DEBUG[2023-04-15 08:03:26.856][private$loadEntries] Creating entries from ids [3]: "167530768, 167530752, 167530731".
biodb.DEBUG[2023-04-15 08:03:26.856][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2023-04-15 08:03:26.857][cch$loadFileContent] Trying to load 3 files from cache: [3]: "167530768, 167530752, 167530731".
biodb.TRACE[2023-04-15 08:03:26.858][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2023-04-15 08:03:26.859][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:03:26.860][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:03:26.860][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:03:26.861][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:03:26.862][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-04-15 08:03:26.862][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2023-04-15 08:03:26.864][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167530768,167530752,167530731/XML".
biodb.DEBUG[2023-04-15 08:03:26.865][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:26.866][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:26.867][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167530768,167530752,167530731/XML".
biodb.TRACE[2023-04-15 08:03:27.023][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/167530768,167530752,167530731/XML).
biodb.TRACE[2023-04-15 08:03:27.252][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167530768.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167530752.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/167530731.xml"
biodb.DEBUG[2023-04-15 08:03:27.254][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:03:27.255][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2023-04-15 08:03:27.255][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2023-04-15 08:03:27.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:27.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:27.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:27.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:27.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:27.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:27.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:27.274][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:27.274][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:27.275][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.276][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:27.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:27.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.279][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:27.280][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:27.281][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.281][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:27.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:27.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.285][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:27.286][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:27.286][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.287][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:27.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:27.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.291][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:27.291][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:27.292][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.293][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:27.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:27.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.296][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:27.297][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:27.298][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.298][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:27.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:27.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.302][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:27.303][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:27.303][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.304][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:27.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:27.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.308][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:27.309][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:27.309][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.310][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.311][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:27.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:27.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.314][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:27.315][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:27.315][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.316][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.317][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:27.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:27.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.320][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:27.321][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:27.321][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.322][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.323][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:27.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:27.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.326][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:27.326][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:27.327][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.328][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:27.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:27.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.331][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:27.332][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:27.333][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.333][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.334][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:27.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:27.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.337][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:27.338][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:27.339][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.339][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:27.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:27.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.343][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:27.344][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:27.345][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.345][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.346][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:27.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:27.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.349][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:27.350][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:27.351][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.351][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.352][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:27.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:27.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.355][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:27.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:27.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:27.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:27.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.361][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:27.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:27.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.364][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:27.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:27.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:27.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:27.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:27.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:27.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.393][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:27.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:27.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:27.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:27.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:27.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:27.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.401][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:27.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:27.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:27.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:27.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:27.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:27.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.410][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:27.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:27.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:27.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:27.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:27.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:27.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.419][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:27.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:27.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:27.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:27.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.430][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:27.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:27.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:27.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:27.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:27.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:27.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:27.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:27.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:27.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:27.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:27.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:27.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:27.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:27.451][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:27.452][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:27.452][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.453][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:27.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:27.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.457][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:27.458][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:27.458][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.459][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:27.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:27.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.604][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:27.605][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:27.606][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.606][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:27.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:27.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.610][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:27.611][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:27.612][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.612][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:27.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:27.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.616][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:27.617][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:27.617][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.618][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:27.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:27.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.622][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:27.622][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:27.623][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.624][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:27.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:27.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.628][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:27.628][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:27.629][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.630][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.631][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:27.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:27.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.633][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:27.634][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:27.635][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.635][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.636][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:27.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:27.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.639][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:27.640][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:27.641][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.641][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:27.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:27.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.645][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:27.646][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:27.646][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.647][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:27.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:27.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.651][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:27.651][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:27.652][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.653][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.653][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:27.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:27.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.656][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:27.657][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:27.658][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.658][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:27.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:27.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.662][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:27.663][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:27.663][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.664][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.665][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:27.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:27.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.668][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:27.668][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:27.669][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.670][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.671][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:27.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:27.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.673][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:27.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:27.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:27.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:27.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:27.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:27.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.682][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:27.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:27.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:27.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:27.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:27.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:27.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.690][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:27.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:27.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:27.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:27.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:27.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:27.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.698][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:27.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:27.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:27.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:27.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:27.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:27.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.705][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:27.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:27.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:27.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:27.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:27.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:27.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:27.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:27.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:27.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:27.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:27.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:27.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:27.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:27.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:27.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:27.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:27.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:27.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:27.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:27.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:27.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:27.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:27.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:27.743][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:27.744][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:27.744][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.745][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:27.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:27.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.749][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:27.749][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:27.750][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.751][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:27.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:27.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.754][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:27.755][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:27.756][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.756][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:27.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:27.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.760][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:27.761][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:27.761][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.762][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:27.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:27.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.766][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:27.766][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:27.767][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.768][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:27.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:27.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.771][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:27.772][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:27.773][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.773][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:27.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:27.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.777][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:27.778][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:27.778][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.779][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.780][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2023-04-15 08:03:27.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:27.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.783][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:27.783][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:27.784][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.784][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.785][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:27.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:27.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.788][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:27.789][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:27.789][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.790][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:27.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:27.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.794][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:27.795][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:27.795][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.796][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:27.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:27.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.799][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:27.800][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:27.801][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.801][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.802][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:27.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:27.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.809][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:27.810][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:27.811][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.811][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2023-04-15 08:03:27.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:27.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.815][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:27.815][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:27.816][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.817][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.817][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:27.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:27.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.820][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:27.821][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:27.821][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.822][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:27.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:27.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.826][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2023-04-15 08:03:27.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:27.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:27.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:27.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:27.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:27.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.833][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2023-04-15 08:03:27.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:27.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:27.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:27.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:27.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:27.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.841][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2023-04-15 08:03:27.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:27.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:27.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:27.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:27.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:27.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.849][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2023-04-15 08:03:27.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:27.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:27.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:27.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:27.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:27.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.857][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2023-04-15 08:03:27.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:27.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:27.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:27.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:27.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:27.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.865][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:27.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:27.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:27.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:27.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.875][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:27.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:27.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:27.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:27.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:27.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:27.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:27.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:27.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:27.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:27.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:27.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:27.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:27.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:27.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:27.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:27.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:27.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:27.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:27.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:27.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:27.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:27.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:27.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:27.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:27.909][self$createEntryFromContent] Accession numbers: 167530768, 167530752, 167530731.
biodb.DEBUG[2023-04-15 08:03:27.910][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:27.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:27.912][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:27.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:27.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:27.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:27.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:27.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:27.918][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.921][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.924][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:27.924][private$selectFields]
biodb.TRACE[2023-04-15 08:03:27.925][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:27.926][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:27.926][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:27.927][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.927][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.928][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.929][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.929][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.930][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.931][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.931][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.932][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:27.933][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:27.933][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.934][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.935][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.935][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.936][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:27.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.942][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.950][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167530768].
biodb.DEBUG[2023-04-15 08:03:27.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:27.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:27.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:27.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:27.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:27.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:27.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:27.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.963][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:27.963][private$selectFields]
biodb.TRACE[2023-04-15 08:03:27.964][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:27.965][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:27.965][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:27.966][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.967][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.967][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.968][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.969][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.969][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.970][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.971][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.971][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:27.972][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:27.973][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.973][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.974][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.975][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.975][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:27.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.984][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167530752].
biodb.DEBUG[2023-04-15 08:03:27.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:27.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:27.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:27.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:27.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:27.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:27.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:27.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.995][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:27.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:27.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:27.998][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:27.998][private$selectFields]
biodb.TRACE[2023-04-15 08:03:27.999][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:28.000][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:28.004][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.005][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.006][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.006][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.007][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.007][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.008][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.009][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.009][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.010][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.011][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.011][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.012][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.013][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.013][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.014][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:28.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.023][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167530731].
biodb.DEBUG[2023-04-15 08:03:28.023][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:28.024][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:28.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:28.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:28.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:28.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:28.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:28.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:28.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:28.065][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:28.067][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:28.068][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2023-04-15 08:03:28.069][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:28.070][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2023-04-15 08:03:28.071][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:28.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:28.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:28.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:28.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:28.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:28.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:28.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:28.079][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.085][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.085][private$selectFields]
biodb.TRACE[2023-04-15 08:03:28.086][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:28.087][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:28.087][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.088][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.089][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.089][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.090][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.090][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.091][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.092][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.092][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.093][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.094][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.094][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.095][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.096][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.096][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.097][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:28.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.100][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.106][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523845].
biodb.DEBUG[2023-04-15 08:03:28.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:28.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:28.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:28.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:28.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:28.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:28.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:28.114][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.119][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.120][private$selectFields]
biodb.TRACE[2023-04-15 08:03:28.120][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:28.121][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:28.122][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.122][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.123][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.124][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.124][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.125][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.126][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.126][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.127][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.127][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.128][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.129][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.129][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.130][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.131][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.131][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:28.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.140][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523844].
biodb.DEBUG[2023-04-15 08:03:28.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:28.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:28.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:28.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:28.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:28.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:28.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:28.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.151][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.153][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.154][private$selectFields]
biodb.TRACE[2023-04-15 08:03:28.155][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:28.155][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:28.156][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.157][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.157][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.158][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.159][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.159][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.160][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.161][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.161][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.162][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.163][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.163][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.164][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.165][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.165][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.166][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:28.167][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.172][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.175][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523841].
biodb.DEBUG[2023-04-15 08:03:28.175][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:28.176][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:28.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:28.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:28.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:28.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:28.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:28.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:28.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:28.211][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:28.213][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:28.214][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2023-04-15 08:03:28.214][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:28.215][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2023-04-15 08:03:28.217][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:28.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:28.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:28.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:28.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:28.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:28.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:28.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:28.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.228][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.230][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.231][private$selectFields]
biodb.TRACE[2023-04-15 08:03:28.232][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:28.232][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:28.233][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.234][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.234][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.235][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.236][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.236][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.237][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.238][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.238][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.239][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.239][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.240][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.241][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.241][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.242][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.243][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:28.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.252][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167527736].
biodb.DEBUG[2023-04-15 08:03:28.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:28.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:28.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:28.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:28.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:28.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:28.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:28.259][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.262][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.265][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.265][private$selectFields]
biodb.TRACE[2023-04-15 08:03:28.266][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:28.266][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:28.267][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.268][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.268][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.269][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.270][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.270][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.271][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.272][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.272][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.273][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.274][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.274][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.275][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.276][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.276][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.277][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:28.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.286][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167513889].
biodb.DEBUG[2023-04-15 08:03:28.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:28.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:28.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:28.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:28.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:28.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:28.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:28.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.296][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.299][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.300][private$selectFields]
biodb.TRACE[2023-04-15 08:03:28.300][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:28.301][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:28.302][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.302][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.303][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.304][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.304][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.305][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.305][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.306][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.307][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.307][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.308][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.309][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.309][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.310][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.311][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.311][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:28.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.315][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.320][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167510581].
biodb.DEBUG[2023-04-15 08:03:28.321][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:28.321][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:28.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:28.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:28.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:28.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:28.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:28.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:28.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:28.362][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:28.364][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:28.365][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:28.366][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2023-04-15 08:03:28.445][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:03:28.446][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:03:28.447][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:03:28.448][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:03:28.542][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:03:28.544][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content"
biodb.TRACE[2023-04-15 08:03:28.546][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.request"
biodb.DEBUG[2023-04-15 08:03:28.548][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:28.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:28.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:28.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:28.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:28.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:28.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:28.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:28.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.562][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.563][private$selectFields]
biodb.TRACE[2023-04-15 08:03:28.569][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:28.569][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:28.570][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.571][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.571][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.572][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.573][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.573][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.574][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.575][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.575][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.576][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.576][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.577][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.578][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.578][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.579][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.580][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:28.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.583][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.586][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.589][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523845].
biodb.DEBUG[2023-04-15 08:03:28.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:28.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:28.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:28.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:28.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:28.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:28.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:28.596][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.602][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.602][private$selectFields]
biodb.TRACE[2023-04-15 08:03:28.603][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:28.604][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:28.604][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.605][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.606][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.606][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.607][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.607][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.608][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.609][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.609][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.610][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.611][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.611][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.612][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.613][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.613][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.614][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:28.615][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.623][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523844].
biodb.DEBUG[2023-04-15 08:03:28.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:28.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:28.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:28.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:28.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:28.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:28.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:28.631][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.636][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.637][private$selectFields]
biodb.TRACE[2023-04-15 08:03:28.637][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:28.638][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:28.639][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.639][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.640][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.641][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.641][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.642][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.643][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.643][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.644][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.645][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.645][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:28.646][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.647][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.647][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.648][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.648][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:28.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:28.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:28.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:28.657][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523841].
biodb.DEBUG[2023-04-15 08:03:28.658][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:28.658][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:28.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:28.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:28.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:28.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:28.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:28.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:28.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:28.687][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:28.689][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:28.690][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:28.691][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2023-04-15 08:03:28.903][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2023-04-15 08:03:28.903][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2023-04-15 08:03:28.905][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2023-04-15 08:03:28.906][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2023-04-15 08:03:29.009][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2023-04-15 08:03:29.011][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content"
biodb.TRACE[2023-04-15 08:03:29.014][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.request"
biodb.DEBUG[2023-04-15 08:03:29.015][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:29.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:29.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:29.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:29.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:29.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:29.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:29.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:29.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.029][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.029][private$selectFields]
biodb.TRACE[2023-04-15 08:03:29.030][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:29.031][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:29.031][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.032][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.033][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.033][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.034][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.035][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.035][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.036][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.037][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.037][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.038][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.039][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.039][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.040][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.041][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.041][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:29.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.047][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.050][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529602].
biodb.DEBUG[2023-04-15 08:03:29.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:29.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:29.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:29.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:29.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:29.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:29.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:29.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.064][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.064][private$selectFields]
biodb.TRACE[2023-04-15 08:03:29.065][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:29.065][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:29.066][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.067][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.068][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.068][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.069][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.070][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.070][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.071][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.072][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.072][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.073][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.074][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.074][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.075][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.081][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.082][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:29.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.085][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.090][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529523].
biodb.DEBUG[2023-04-15 08:03:29.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:29.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:29.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:29.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:29.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:29.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:29.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:29.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.101][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.104][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.104][private$selectFields]
biodb.TRACE[2023-04-15 08:03:29.105][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:29.106][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:29.106][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.107][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.108][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.108][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.109][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.110][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.110][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.111][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.112][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.112][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.113][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.114][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.114][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.115][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.116][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.116][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:29.117][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.120][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.122][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.125][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167527736].
biodb.DEBUG[2023-04-15 08:03:29.126][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:29.127][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:29.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:29.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:29.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:29.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:29.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:29.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:29.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:29.167][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:29.170][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:29.170][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8ad32143f99567438eba281a371befbc".
biodb.TRACE[2023-04-15 08:03:29.171][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:29.172][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content".
biodb.DEBUG[2023-04-15 08:03:29.173][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:29.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:29.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:29.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:29.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:29.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:29.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:29.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:29.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.185][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.187][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.188][private$selectFields]
biodb.TRACE[2023-04-15 08:03:29.189][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:29.189][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:29.190][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.191][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.191][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.192][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.193][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.193][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.194][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.195][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.195][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.196][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.197][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.197][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.198][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.199][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.199][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.200][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:29.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.203][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.209][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167531353].
biodb.DEBUG[2023-04-15 08:03:29.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:29.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:29.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:29.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:29.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:29.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:29.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:29.217][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.222][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.223][private$selectFields]
biodb.TRACE[2023-04-15 08:03:29.224][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:29.224][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:29.225][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.226][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.227][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.227][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.228][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.229][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.229][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.230][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.231][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.231][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.232][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.233][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.233][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.234][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.235][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.235][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:29.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.239][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.244][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [83638281].
biodb.DEBUG[2023-04-15 08:03:29.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:29.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:29.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:29.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:29.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:29.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:29.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:29.252][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.255][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.258][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.258][private$selectFields]
biodb.TRACE[2023-04-15 08:03:29.259][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:29.260][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:29.260][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.261][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.262][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.262][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.263][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.264][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.265][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.265][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.266][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.267][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.267][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.268][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.269][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.269][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.270][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.271][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:29.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.279][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.284][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167531149].
biodb.DEBUG[2023-04-15 08:03:29.285][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:29.285][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:29.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:29.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:29.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:29.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:29.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:29.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:29.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:29.314][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:29.316][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:29.317][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ead2a4c6d4c972bfbf7c3e8a0e8299c8".
biodb.TRACE[2023-04-15 08:03:29.318][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:29.319][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content".
biodb.DEBUG[2023-04-15 08:03:29.321][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:29.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:29.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:29.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:29.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:29.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:29.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:29.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:29.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.334][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.335][private$selectFields]
biodb.TRACE[2023-04-15 08:03:29.336][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:29.336][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:29.337][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.338][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.338][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.339][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.340][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.340][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.341][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.342][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.342][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.343][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.344][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.344][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.345][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.346][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.346][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.347][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:29.348][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.353][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.356][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167530768].
biodb.DEBUG[2023-04-15 08:03:29.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:29.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:29.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:29.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:29.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:29.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:29.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:29.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.369][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.370][private$selectFields]
biodb.TRACE[2023-04-15 08:03:29.371][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:29.371][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:29.372][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.373][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.373][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.374][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.375][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.375][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.376][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.377][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.377][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.378][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.379][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.379][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.380][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.381][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.381][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.382][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:29.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.385][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.388][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.391][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167530752].
biodb.DEBUG[2023-04-15 08:03:29.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:29.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:29.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:29.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:29.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:29.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:29.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:29.399][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.404][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.405][private$selectFields]
biodb.TRACE[2023-04-15 08:03:29.406][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:29.406][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:29.407][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.408][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.408][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.409][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.410][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.410][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.411][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.412][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.412][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.413][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.414][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.414][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.415][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.416][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.416][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.417][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:29.418][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.426][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167530731].
biodb.DEBUG[2023-04-15 08:03:29.427][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:29.427][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:29.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:29.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:29.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:29.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:29.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:29.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:29.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:29.470][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:29.477][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:29.478][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2023-04-15 08:03:29.479][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:29.480][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2023-04-15 08:03:29.481][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:29.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:29.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:29.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:29.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:29.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:29.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:29.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:29.489][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.492][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.495][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.495][private$selectFields]
biodb.TRACE[2023-04-15 08:03:29.496][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:29.497][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:29.497][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.498][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.499][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.499][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.500][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.501][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.501][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.502][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.503][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.503][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.504][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.505][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.505][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.506][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.507][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.507][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:29.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.516][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523845].
biodb.DEBUG[2023-04-15 08:03:29.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:29.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:29.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:29.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:29.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:29.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:29.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:29.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.530][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.530][private$selectFields]
biodb.TRACE[2023-04-15 08:03:29.531][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:29.532][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:29.532][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.533][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.534][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.534][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.535][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.536][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.536][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.537][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.538][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.538][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.539][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.540][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.540][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.541][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.542][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.542][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:29.543][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.548][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.551][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523844].
biodb.DEBUG[2023-04-15 08:03:29.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:29.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:29.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:29.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:29.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:29.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:29.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:29.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.565][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.565][private$selectFields]
biodb.TRACE[2023-04-15 08:03:29.566][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:29.566][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:29.567][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.568][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.568][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.569][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.570][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.570][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.571][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.572][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.572][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.573][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.574][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.574][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.575][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.576][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.576][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.577][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:29.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.583][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.586][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523841].
biodb.DEBUG[2023-04-15 08:03:29.587][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:29.588][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:29.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:29.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:29.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:29.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:29.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:29.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:29.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:29.617][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:29.619][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:29.620][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2023-04-15 08:03:29.621][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:29.622][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2023-04-15 08:03:29.623][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:29.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:29.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:29.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:29.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:29.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:29.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:29.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:29.631][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.637][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.637][private$selectFields]
biodb.TRACE[2023-04-15 08:03:29.638][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:29.639][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:29.639][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.640][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.641][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.641][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.642][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.643][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.644][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.644][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.645][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.646][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.646][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.647][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.648][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.649][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.649][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.650][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:29.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.653][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.656][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.659][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167527736].
biodb.DEBUG[2023-04-15 08:03:29.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:29.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:29.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:29.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:29.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:29.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:29.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:29.668][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.678][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.678][private$selectFields]
biodb.TRACE[2023-04-15 08:03:29.679][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:29.680][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:29.680][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.681][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.682][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.682][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.683][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.684][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.684][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.685][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.686][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.686][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.687][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.687][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.688][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.689][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.689][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.690][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:29.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.696][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.699][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167513889].
biodb.DEBUG[2023-04-15 08:03:29.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:29.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:29.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:29.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:29.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:29.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:29.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:29.707][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.713][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.714][private$selectFields]
biodb.TRACE[2023-04-15 08:03:29.714][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:29.715][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:29.716][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.716][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.717][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.718][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.718][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.719][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.720][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.720][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.721][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.722][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.722][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.723][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.724][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.724][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.725][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.726][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:29.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.729][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.735][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167510581].
biodb.DEBUG[2023-04-15 08:03:29.735][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:29.736][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:29.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:29.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:29.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:29.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:29.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:29.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:29.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:29.777][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:29.779][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:29.780][cch$loadFileContent] Trying to load 1 files from cache: [1]: "93b38cb571769a97b3321f7f5a86241a".
biodb.TRACE[2023-04-15 08:03:29.781][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:29.782][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content".
biodb.DEBUG[2023-04-15 08:03:29.783][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:29.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:29.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:29.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:29.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:29.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:29.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:29.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:29.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.794][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.797][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.797][private$selectFields]
biodb.TRACE[2023-04-15 08:03:29.798][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:29.799][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:29.799][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.800][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.801][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.801][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.802][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.803][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.803][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.804][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.804][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.805][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.806][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.806][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.807][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.808][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.808][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.809][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:29.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.815][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.818][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523845].
biodb.DEBUG[2023-04-15 08:03:29.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:29.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:29.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:29.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:29.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:29.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:29.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:29.826][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.832][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.833][private$selectFields]
biodb.TRACE[2023-04-15 08:03:29.833][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:29.834][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:29.835][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.835][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.836][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.837][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.837][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.838][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.839][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.839][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.840][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.841][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.841][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.842][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.843][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.843][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.844][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.845][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:29.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.848][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.854][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523844].
biodb.DEBUG[2023-04-15 08:03:29.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:29.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:29.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:29.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:29.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:29.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:29.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:29.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.865][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.868][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.869][private$selectFields]
biodb.TRACE[2023-04-15 08:03:29.869][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:29.870][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:29.875][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.876][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.876][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.877][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.878][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.878][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.879][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.880][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.880][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.881][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.882][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.882][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.883][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.884][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.884][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.885][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:29.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.891][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.894][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167523841].
biodb.DEBUG[2023-04-15 08:03:29.895][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:29.895][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:29.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:29.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:29.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:29.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:29.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:29.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:29.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:29.925][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:29.927][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:29.928][cch$loadFileContent] Trying to load 1 files from cache: [1]: "405cf707472983a89dc9e0092ca888ad".
biodb.TRACE[2023-04-15 08:03:29.929][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:29.930][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content".
biodb.DEBUG[2023-04-15 08:03:29.931][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:29.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:29.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:29.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:29.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:29.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:29.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:29.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:29.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.942][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.945][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.945][private$selectFields]
biodb.TRACE[2023-04-15 08:03:29.946][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:29.947][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:29.947][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.948][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.949][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.949][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.950][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.951][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.951][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.952][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.953][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.953][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.954][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.955][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.955][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.956][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.957][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.957][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:29.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.961][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.966][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529602].
biodb.DEBUG[2023-04-15 08:03:29.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:29.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:29.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:29.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:29.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:29.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:29.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:29.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.980][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.980][private$selectFields]
biodb.TRACE[2023-04-15 08:03:29.981][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:29.982][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:29.982][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.983][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.984][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.984][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.985][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.986][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.987][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.987][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.988][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.989][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.989][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:29.990][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.991][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.991][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.992][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.993][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:29.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:29.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:29.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:29.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.002][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167529523].
biodb.DEBUG[2023-04-15 08:03:30.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:30.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:30.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:30.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:30.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:30.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:30.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:30.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.012][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.015][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:30.016][private$selectFields]
biodb.TRACE[2023-04-15 08:03:30.016][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:30.017][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:30.018][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:30.018][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.019][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.020][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.020][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.021][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.022][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.022][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.023][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.024][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:30.024][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2023-04-15 08:03:30.025][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.026][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.026][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.027][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.028][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2023-04-15 08:03:30.028][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.034][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.037][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [167527736].
biodb.DEBUG[2023-04-15 08:03:30.037][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:30.038][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-04-15 08:03:30.050][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-04-15 08:03:30.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-04-15 08:03:30.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.053][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-04-15 08:03:30.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-04-15 08:03:30.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-15 08:03:30.057][biodb::testThat]
biodb.INFO [2023-04-15 08:03:30.057][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2023-04-15 08:03:30.058][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:03:30.059][biodb::testThat]
biodb.TRACE[2023-04-15 08:03:30.061][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-04-15 08:03:30.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-04-15 08:03:30.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.064][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-04-15 08:03:30.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-04-15 08:03:30.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:30.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:30.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:30.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:30.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:30.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:30.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:30.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:30.123][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:30.125][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:30.126][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2023-04-15 08:03:30.127][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:30.128][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2023-04-15 08:03:30.130][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:30.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:30.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:30.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:30.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:30.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:30.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:30.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:30.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:30.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:30.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:30.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:30.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.170][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:30.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:30.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.173][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:30.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:30.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:30.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:30.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:30.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:30.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.187][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:30.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:30.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.189][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:30.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:30.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.203][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:30.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:30.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.206][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:30.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:30.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.208][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.213][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.216][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.219][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.221][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.224][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:30.225][private$selectFields]
biodb.TRACE[2023-04-15 08:03:30.225][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:30.226][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:30.227][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:30.227][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:30.228][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:30.229][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.229][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.230][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.231][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.231][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.232][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.233][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.233][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.234][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.235][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.235][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.236][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.237][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.237][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.238][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.239][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.239][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.240][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.241][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.241][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.242][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.243][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.243][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:30.244][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:30.245][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.245][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.246][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:30.246][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:30.247][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.248][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.248][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.249][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.250][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.250][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.251][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:30.252][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:30.252][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.253][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.254][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.254][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.255][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.256][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.256][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.257][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.258][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.258][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.259][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:30.260][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:30.260][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.261][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.262][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.262][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.263][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.264][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.264][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.265][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.266][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.266][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.267][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.268][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.268][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.269][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.270][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:30.270][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:30.275][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.276][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.277][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.277][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.278][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.279][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.279][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.280][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.280][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.281][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.282][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.282][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.283][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.284][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.284][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.285][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.286][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.286][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.287][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.288][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.288][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.289][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.289][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:30.290][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:30.291][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.291][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.292][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:30.293][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:30.293][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.294][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.295][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.295][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.296][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.296][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.297][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:30.298][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:30.298][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.299][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.300][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.300][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.301][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.302][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.302][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.303][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.304][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.304][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.305][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:30.305][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:30.306][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.307][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.307][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.308][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.309][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.309][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.310][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.311][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.311][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.312][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.313][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.313][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.314][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.315][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.315][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:30.316][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:30.317][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:30.317][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:30.318][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.319][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.319][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.320][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.321][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.321][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.322][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.323][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.323][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.324][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.324][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.325][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.326][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.326][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.327][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.328][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.328][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.329][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.330][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.330][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.331][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.332][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.332][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:30.333][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:30.334][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.334][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.335][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:30.336][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:30.336][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.337][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.338][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.338][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.339][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.340][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.340][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:30.341][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:30.342][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.342][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.343][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.344][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.344][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.345][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.346][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.346][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.347][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.348][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.348][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:30.349][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:30.350][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.350][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.351][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.352][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.352][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.353][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.354][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.354][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.355][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.356][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.356][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.357][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.358][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.358][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.359][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:03:30.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:30.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:30.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:30.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:30.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:30.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:30.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.410][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:30.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:30.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:30.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:30.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.416][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:30.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:30.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:30.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:30.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:30.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:30.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.424][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:30.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:30.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.436][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:30.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:30.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.439][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:30.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:30.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.442][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:30.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:30.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.462][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:30.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:30.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.464][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:30.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:30.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.467][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:30.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:30.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.470][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.473][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.481][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.486][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.489][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.492][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.495][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.498][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.507][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167529381, N-methyl-1-vinylsulfonyl-azetidine-3-carboxamide, 1-ethenylsulfonyl-N-methyl-3-azetidinecarboxamide, 1-ethenylsulfonyl-N-methylazetidine-3-carboxamide, 1-ethenylsulfonyl-N-methyl-azetidine-3-carboxamide, ...].
biodb.DEBUG[2023-04-15 08:03:30.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:30.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:30.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:30.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:30.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:30.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:30.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:30.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:30.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:30.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:30.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:30.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.549][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:30.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:30.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.552][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:30.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:30.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.555][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:30.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:30.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:30.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:30.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.563][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.566][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:30.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:30.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.569][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:30.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:30.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.583][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:30.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:30.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.586][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:30.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:30.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.591][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.594][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.597][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.600][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.603][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.605][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:30.606][private$selectFields]
biodb.TRACE[2023-04-15 08:03:30.607][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:30.607][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:30.608][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:30.609][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:30.610][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:30.610][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.611][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.612][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.612][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.613][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.614][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.614][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.615][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.616][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.616][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.617][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.618][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.618][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.619][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.620][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.620][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.621][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.622][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.622][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.623][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.624][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.624][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.625][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:30.626][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:30.626][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.627][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.628][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:30.629][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:30.629][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.630][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.631][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.631][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.632][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.633][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.633][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:30.634][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:30.635][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.636][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.636][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.637][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.638][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.638][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.639][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.640][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.640][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.641][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.642][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:30.642][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:30.643][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.644][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.644][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.645][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.646][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.647][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.647][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.648][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.649][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.649][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.650][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.651][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.652][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.652][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.653][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:30.654][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:30.654][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.655][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.656][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.656][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.657][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.658][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.658][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.659][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.660][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.660][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.661][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.662][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.662][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.663][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.664][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.664][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.665][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.666][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.666][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.667][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.668][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.668][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.669][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:30.670][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:30.670][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.671][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.672][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:30.673][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:30.673][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.674][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.675][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.675][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.676][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.677][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.677][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:30.678][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:30.679][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.679][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.680][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.685][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.686][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.687][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.687][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.688][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.689][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.689][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.690][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:30.691][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:30.692][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.692][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.693][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.694][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.694][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.695][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.696][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.697][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.697][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.698][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.698][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.699][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.700][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.701][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.701][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:30.702][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:30.703][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:30.703][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:30.704][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.705][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.705][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.706][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.707][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.708][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.708][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.709][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.710][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.711][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.711][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.712][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.713][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.713][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.714][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.715][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.715][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.716][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.717][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.718][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.718][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.719][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.720][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:30.720][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:30.721][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.722][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.723][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:30.723][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:30.724][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.724][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.725][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.726][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.727][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.727][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.728][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:30.729][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:30.729][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.730][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.731][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.732][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.732][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.733][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.734][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.735][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.735][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.736][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.737][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:30.737][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:30.738][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.739][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.739][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.740][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.741][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.742][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.742][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.743][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.744][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.744][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.745][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.746][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.747][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.747][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.748][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:03:30.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:30.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:30.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:30.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:30.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:30.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:30.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.779][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.803][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:30.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:30.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.805][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:30.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:30.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.808][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:30.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:30.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.811][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:30.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:30.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:30.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:30.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:30.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:30.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.829][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:30.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:30.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.832][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:30.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:30.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.835][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:30.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:30.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.856][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:30.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:30.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.858][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:30.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:30.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:30.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:30.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.873][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.876][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.879][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.882][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.884][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.887][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.900][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167522372, N-[cyano(5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-3-yl)methyl]formamide, N-[cyano(5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-3-yl)methyl]formamide, N-[cyano(5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-3-yl)methyl]formamide, N-[cyano(5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-3-yl)methyl]methanamide, ...].
biodb.DEBUG[2023-04-15 08:03:30.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:30.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:30.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:30.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:30.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:30.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:30.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:30.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:30.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:30.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:30.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:30.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:30.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:30.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:30.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:30.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.938][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:30.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.941][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:30.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:30.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.944][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:30.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:30.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:30.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:30.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:30.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:30.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:30.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.957][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:30.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:30.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.960][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:30.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:30.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:30.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:30.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.973][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:30.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:30.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.976][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:30.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:30.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.979][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:30.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.987][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:30.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.989][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.992][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:30.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:30.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:30.995][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:30.995][private$selectFields]
biodb.TRACE[2023-04-15 08:03:30.996][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:30.997][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:30.997][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:30.998][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:30.999][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:30.999][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.000][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.000][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.001][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.002][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.002][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.003][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.004][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.004][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.005][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.006][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.006][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.007][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.008][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.008][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.009][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.010][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.010][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.011][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.012][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.012][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.013][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.014][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:31.014][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:31.015][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.015][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.016][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:31.017][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:31.017][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.018][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.019][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.020][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.020][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.021][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.021][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:31.022][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:31.023][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.023][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.024][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.025][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.025][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.026][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.027][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.027][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.028][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.029][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.029][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:31.030][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:31.031][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.031][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.032][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.033][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.033][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.034][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.035][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.035][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.036][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.036][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.037][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.038][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.038][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.039][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.040][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:31.040][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:31.041][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.042][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.042][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.043][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.044][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.044][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.045][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.046][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.046][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.047][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.048][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.048][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.049][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.050][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.050][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.051][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.052][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.053][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.053][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.054][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.055][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.055][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.056][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:31.057][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:31.057][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.058][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.059][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:31.059][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:31.060][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.061][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.061][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.062][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.063][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.063][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.064][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:31.065][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:31.065][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.066][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.066][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.067][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.068][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.068][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.069][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.070][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.070][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.071][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.072][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:31.072][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:31.073][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.074][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.074][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.075][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.076][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.076][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.077][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.078][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.078][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.079][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.080][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.080][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.081][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.082][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.082][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:31.083][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:31.084][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:31.084][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:31.085][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.086][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.086][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.087][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.088][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.088][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.089][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.090][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.090][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.091][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.092][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.093][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.098][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.098][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.099][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.100][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.100][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.101][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.102][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.102][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.103][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.104][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.104][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:31.105][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:31.105][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.106][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.107][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:31.107][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:31.108][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.109][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.109][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.110][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.111][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.111][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.112][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:31.113][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:31.114][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.114][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.115][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.116][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.116][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.117][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.118][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.118][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.119][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.120][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.120][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:31.121][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:31.122][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.123][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.123][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.124][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.125][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.125][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.126][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.127][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.127][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.128][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.129][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.129][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.130][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.131][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.131][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:03:31.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:31.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:31.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:31.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:31.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:31.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:31.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.163][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.182][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:31.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:31.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.185][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:31.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:31.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.188][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:31.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:31.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:31.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:31.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:31.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:31.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:31.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:31.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.207][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:31.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:31.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.210][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:31.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:31.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.212][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:31.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:31.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.232][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:31.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:31.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.235][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:31.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:31.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.237][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:31.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:31.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.240][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.254][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.257][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.259][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.262][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.270][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167522082, N-[1-cyano-2-(5,6-dihydro-4H-pyrrolo[1,2-b]pyrazol-3-yl)ethyl]formamide, N-[1-cyano-2-(5,6-dihydro-4H-pyrrolo[1,2-b]pyrazol-3-yl)ethyl]formamide, N-[1-cyano-2-(5,6-dihydro-4H-pyrrolo[1,2-b]pyrazol-3-yl)ethyl]formamide, N-[1-cyano-2-(5,6-dihydro-4H-pyrrolo[1,2-b]pyrazol-3-yl)ethyl]methanamide, ...].
biodb.DEBUG[2023-04-15 08:03:31.270][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:31.271][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:31.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:31.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:31.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:31.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:31.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:31.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:31.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:31.306][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:31.308][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:31.309][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2023-04-15 08:03:31.310][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:31.311][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2023-04-15 08:03:31.313][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:31.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:31.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:31.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:31.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:31.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:31.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:31.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:31.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:31.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:31.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:31.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:31.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.326][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.332][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.354][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:31.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:31.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.356][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:31.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:31.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:31.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:31.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:31.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:31.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.370][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:31.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:31.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.373][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:31.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:31.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:31.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:31.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.389][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:31.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:31.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.394][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.397][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.400][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.403][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.408][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:31.409][private$selectFields]
biodb.TRACE[2023-04-15 08:03:31.409][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:31.410][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:31.411][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:31.411][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:31.412][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:31.413][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.413][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.414][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.415][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.415][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.416][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.416][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.417][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.418][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.419][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.419][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.420][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.421][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.421][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.422][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.423][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.423][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.424][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.425][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.425][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.426][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.427][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.427][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:31.428][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:31.429][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.429][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.430][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:31.431][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:31.431][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.432][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.433][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.433][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.434][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.435][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.435][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:31.436][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:31.437][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.437][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.438][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.439][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.440][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.440][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.441][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.441][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.442][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.443][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.443][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:31.444][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:31.445][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.445][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.446][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.447][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.447][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.448][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.449][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.450][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.450][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.451][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.452][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.452][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.453][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.454][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.454][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:31.455][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:31.456][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.456][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.457][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.458][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.458][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.459][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.460][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.460][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.461][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.462][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.462][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.463][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.464][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.464][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.465][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.466][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.466][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.467][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.468][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.468][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.469][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.470][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.470][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:31.471][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:31.472][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.472][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.473][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:31.474][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:31.474][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.475][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.476][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.476][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.477][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.478][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.478][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:31.479][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:31.480][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.480][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.481][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.482][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.482][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.483][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.484][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.484][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.485][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.486][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.486][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:31.487][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:31.488][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.488][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.489][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.490][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.490][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.491][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.492][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.492][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.498][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.498][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.499][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.499][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.500][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.501][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.501][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:31.502][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:31.503][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:31.503][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:31.504][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.505][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.505][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.506][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.507][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.507][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.508][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.509][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.509][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.510][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.511][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.511][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.512][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.512][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.513][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.514][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.514][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.515][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.516][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.516][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.517][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.518][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.518][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:31.519][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:31.520][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.520][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.521][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:31.522][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:31.522][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.523][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.523][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.524][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.525][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.525][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.526][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:31.527][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:31.527][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.528][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.529][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.529][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.530][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.531][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.531][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.532][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.533][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.533][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.534][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:31.535][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:31.535][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.536][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.536][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.537][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.538][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.538][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.539][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.540][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.541][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.541][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.542][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.542][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.543][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.544][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.544][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:03:31.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:31.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:31.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:31.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:31.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:31.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:31.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.569][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.583][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.588][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.594][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:31.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:31.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.596][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:31.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:31.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.599][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:31.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:31.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:31.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:31.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:31.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:31.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:31.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:31.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.618][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:31.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:31.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.620][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:31.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:31.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.623][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:31.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:31.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.642][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:31.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:31.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.645][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:31.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:31.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.647][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:31.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:31.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.650][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.653][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.656][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.659][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.661][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.664][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.667][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.669][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.672][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.680][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167514507, methyl 4,7-difluoro-1-oxo-indane-2-carboxylate, 4,7-difluoro-3-oxo-1,2-dihydroindene-2-carboxylic acid methyl ester, methyl 4,7-difluoro-3-oxo-1,2-dihydroindene-2-carboxylate, methyl 4,7-bis(fluoranyl)-3-oxidanylidene-1,2-dihydroindene-2-carboxylate, ...].
biodb.DEBUG[2023-04-15 08:03:31.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:31.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:31.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:31.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:31.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:31.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:31.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:31.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:31.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:31.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:31.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:31.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.724][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:31.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:31.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.727][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:31.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:31.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.729][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:31.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:31.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:31.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:31.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.740][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:31.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:31.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.743][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:31.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:31.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.756][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:31.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:31.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.759][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:31.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:31.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.761][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.764][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.767][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.769][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.772][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.775][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.777][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:31.778][private$selectFields]
biodb.TRACE[2023-04-15 08:03:31.779][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:31.779][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:31.780][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:31.780][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:31.781][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:31.782][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.782][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.783][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.784][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.784][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.785][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.786][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.786][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.787][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.788][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.788][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.789][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.790][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.790][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.791][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.792][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.792][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.793][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.793][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.794][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.795][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.795][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.796][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:31.797][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:31.797][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.798][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.799][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:31.799][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:31.800][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.801][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.801][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.802][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.803][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.803][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.804][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:31.805][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:31.805][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.806][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.806][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.807][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.808][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.808][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.809][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.810][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.810][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.811][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.812][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:31.812][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:31.813][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.814][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.814][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.815][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.816][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.816][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.817][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.818][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.818][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.819][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.820][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.820][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.821][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.822][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.822][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:31.823][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:31.824][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.824][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.825][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.825][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.826][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.827][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.827][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.828][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.829][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.829][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.830][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.831][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.831][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.832][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.833][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.834][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.834][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.835][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.836][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.836][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.837][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.838][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.838][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:31.839][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:31.840][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.840][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.841][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:31.842][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:31.842][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.843][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.844][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.844][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.845][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.846][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.846][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:31.847][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:31.848][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.848][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.849][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.850][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.850][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.851][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.852][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.853][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.853][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.854][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.855][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:31.855][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:31.856][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.857][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.857][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.858][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.859][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.859][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.860][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.861][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.861][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.862][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.863][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.863][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.864][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.865][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.865][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:31.866][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:31.867][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:31.868][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:31.868][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.869][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.870][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.870][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.871][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.872][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.872][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.873][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.873][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.874][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.875][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.875][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.876][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.877][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.878][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.878][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.879][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.880][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.880][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.881][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.882][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.882][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.883][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:31.884][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:31.884][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.885][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.890][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:31.891][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:31.891][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.892][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.893][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.893][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.894][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.895][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.895][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:31.896][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:31.897][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.897][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.898][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.899][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.900][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.900][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.901][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.901][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:31.902][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.903][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.903][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:31.904][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:31.905][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.905][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.906][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.907][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:31.907][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.908][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.909][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.909][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:31.910][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.910][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.911][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.912][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:31.912][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.913][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.914][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:03:31.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:31.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:31.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:31.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:31.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:31.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:31.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:31.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:31.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.944][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:31.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:31.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:31.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.963][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:31.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:31.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.966][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:31.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:31.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.969][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:31.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:31.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:31.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:31.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:31.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:31.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:31.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:31.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:31.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.988][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:31.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:31.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.990][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:31.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:31.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.993][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:31.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:31.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:31.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:31.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:31.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.012][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:32.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:32.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.015][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:32.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:32.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.017][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:32.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:32.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.023][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.028][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.031][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.034][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.036][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.039][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.042][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.049][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167491345, 2-(2-fluoro-4,5-dihydroxy-cyclohexyl)ethylphosphonous acid, 2-(2-fluoro-4,5-dihydroxycyclohexyl)ethylphosphonous acid, 2-(2-fluoro-4,5-dihydroxycyclohexyl)ethylphosphonous acid, 2-[2-fluoranyl-4,5-bis(oxidanyl)cyclohexyl]ethylphosphonous acid, ...].
biodb.DEBUG[2023-04-15 08:03:32.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:32.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:32.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:32.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:32.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:32.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:32.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:32.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:32.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:32.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:32.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:32.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.068][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.071][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.086][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.094][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:32.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:32.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.097][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:32.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:32.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:32.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:32.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.103][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:32.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:32.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.111][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:32.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:32.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.114][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:32.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:32.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.127][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:32.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:32.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.130][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:32.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:32.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.133][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.138][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.141][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.143][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.146][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.149][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:32.149][private$selectFields]
biodb.TRACE[2023-04-15 08:03:32.150][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:32.151][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:32.151][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:32.152][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:32.153][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:32.153][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.154][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.155][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.155][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.156][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.157][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.157][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.158][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.159][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.159][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.160][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.161][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.161][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.162][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.163][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.163][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.164][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.165][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.165][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.166][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.167][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.167][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.168][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:32.169][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:32.169][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.170][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.171][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:32.171][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:32.172][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.173][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.173][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.174][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.175][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.175][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.176][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:32.177][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:32.177][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.178][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.178][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.179][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.180][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.180][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.181][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.182][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.182][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.183][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.184][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:32.184][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:32.185][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.186][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.186][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.187][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.188][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.188][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.189][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.190][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.191][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.191][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.192][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.193][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.193][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.194][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.195][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:32.195][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:32.196][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.197][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.197][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.198][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.199][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.199][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.200][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.201][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.201][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.202][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.203][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.203][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.204][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.205][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.205][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.206][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.207][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.207][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.208][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.209][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.210][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.210][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.211][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:32.212][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:32.212][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.213][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.214][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:32.214][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:32.215][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.216][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.216][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.217][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.218][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.218][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.219][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:32.220][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:32.220][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.221][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.222][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.223][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.223][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.224][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.225][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.225][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.226][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.227][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.227][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:32.228][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:32.229][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.229][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.230][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.231][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.231][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.232][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.233][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.233][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.234][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.235][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.235][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.236][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.237][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.237][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.238][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:32.239][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:32.239][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:32.240][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:32.241][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.241][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.242][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.243][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.243][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.244][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.245][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.245][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.246][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.247][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.247][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.248][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.249][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.249][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.250][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.251][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.251][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.252][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.253][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.253][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.254][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.255][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.255][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:32.256][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:32.257][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.258][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.258][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:32.259][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:32.260][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.260][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.261][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.262][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.262][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.263][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.264][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:32.264][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:32.265][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.266][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.266][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.267][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.268][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.268][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.269][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.270][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.271][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.271][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.272][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:32.273][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:32.273][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.274][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.275][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.275][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.276][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.277][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.277][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.278][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.279][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.280][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.280][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.281][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.282][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.282][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.304][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:03:32.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:32.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:32.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:32.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:32.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:32.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:32.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.355][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:32.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:32.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.358][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:32.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:32.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.361][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:32.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:32.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:32.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:32.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.366][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:32.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:32.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:32.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:32.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.380][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:32.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:32.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.383][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:32.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:32.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.386][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:32.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:32.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:32.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:32.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.408][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:32.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:32.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.410][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:32.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:32.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.413][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.416][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.421][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.425][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.428][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.434][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.436][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.444][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167438444, oxiran-2-ylmethyl 3,4,5-trihydroxybenzoate, 3,4,5-trihydroxybenzoic acid 2-oxiranylmethyl ester, oxiran-2-ylmethyl 3,4,5-trihydroxybenzoate, oxiran-2-ylmethyl 3,4,5-tris(oxidanyl)benzoate, ...].
biodb.DEBUG[2023-04-15 08:03:32.445][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:32.446][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:32.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:32.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:32.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:32.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:32.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:32.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:32.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:32.480][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:32.482][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:32.483][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2023-04-15 08:03:32.484][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:32.485][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2023-04-15 08:03:32.487][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:32.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:32.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:32.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:32.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:32.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:32.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:32.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:32.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:32.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:32.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:32.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:32.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.533][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:32.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:32.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.536][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:32.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:32.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.538][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:32.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:32.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:32.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:32.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.546][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.549][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:32.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:32.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.552][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:32.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:32.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.565][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:32.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:32.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.568][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:32.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:32.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.579][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.581][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.584][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.587][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:32.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:32.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.589][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:32.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:32.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.592][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:32.593][private$selectFields]
biodb.TRACE[2023-04-15 08:03:32.593][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:32.594][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:32.595][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:32.595][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:32.596][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:32.597][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.597][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.598][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.599][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.599][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.600][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.601][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.602][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.602][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.603][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.603][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.604][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.605][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.606][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.606][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.607][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.608][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.608][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.609][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.610][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.610][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.611][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.612][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:32.613][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:32.613][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.614][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.614][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:32.615][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:32.616][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.617][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.617][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.618][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.619][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.619][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.620][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:32.621][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:32.621][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.622][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.623][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.623][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.624][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.625][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.625][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.626][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.627][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.627][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.628][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:32.629][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:32.630][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.630][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.631][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.632][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.632][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.633][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.634][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.634][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.635][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.636][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.636][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.637][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.638][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.638][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.639][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:32.640][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:32.640][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.641][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.642][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:32.643][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:32.643][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.644][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.645][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.645][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.646][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.647][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.647][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.648][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.649][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.649][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.650][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.651][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.652][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.652][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.653][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.654][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.654][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.655][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.656][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.656][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.657][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.658][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.658][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:32.659][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:32.660][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.660][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.661][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:32.662][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:32.663][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.663][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.664][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.665][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.665][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.666][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.667][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:32.667][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:32.668][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.669][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.669][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.670][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.671][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.671][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.672][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.673][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.673][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.674][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.675][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:32.676][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:32.676][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.677][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.678][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.678][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.679][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.680][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.680][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.681][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.682][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.682][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.683][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.684][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.684][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.685][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.686][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:32.686][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:32.687][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.688][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.688][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:32.689][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:32.690][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:32.691][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:32.691][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.692][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.692][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.693][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.694][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.695][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.695][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.696][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.697][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.697][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.698][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.699][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.699][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.700][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.701][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.701][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.702][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.703][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.703][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.704][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.705][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.705][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.706][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:32.712][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:32.712][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.713][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.714][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:32.714][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:32.715][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.716][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.716][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.717][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.718][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.718][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.719][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:32.720][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:32.720][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.721][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.722][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.722][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.723][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.724][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.724][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.725][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.726][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.726][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.727][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:32.728][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:32.728][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.729][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.729][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.730][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.731][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.731][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.732][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.733][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.733][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.734][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.735][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.735][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.736][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.737][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.737][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:03:32.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:32.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:32.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:32.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:32.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:32.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:32.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.766][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.779][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.788][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:32.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:32.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.791][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:32.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:32.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.793][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:32.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:32.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:32.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:32.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:32.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:32.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:32.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:32.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.813][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:32.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:32.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.816][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:32.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:32.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.818][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:32.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:32.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.838][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:32.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:32.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:32.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:32.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.843][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:32.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:32.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.855][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.858][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.861][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.866][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.869][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.877][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167529381, N-methyl-1-vinylsulfonyl-azetidine-3-carboxamide, 1-ethenylsulfonyl-N-methyl-3-azetidinecarboxamide, 1-ethenylsulfonyl-N-methylazetidine-3-carboxamide, 1-ethenylsulfonyl-N-methyl-azetidine-3-carboxamide, ...].
biodb.DEBUG[2023-04-15 08:03:32.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:32.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:32.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:32.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:32.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:32.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:32.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:32.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:32.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:32.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:32.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:32.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.923][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:32.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:32.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.926][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:32.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:32.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:32.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:32.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:32.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:32.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:32.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.939][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:32.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:32.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.942][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:32.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:32.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:32.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:32.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.955][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:32.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:32.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.958][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:32.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:32.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.961][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:32.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.966][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.969][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:32.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.971][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:32.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.976][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:32.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:32.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.979][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:32.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:32.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.982][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:32.982][private$selectFields]
biodb.TRACE[2023-04-15 08:03:32.983][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:32.984][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:32.984][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:32.985][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:32.986][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:32.986][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.987][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.988][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.988][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:32.989][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.990][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.990][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.991][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:32.992][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.992][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.993][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.994][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:32.994][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.995][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.996][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.996][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:32.997][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:32.998][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:32.998][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:32.999][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.000][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.000][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.001][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:33.002][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:33.002][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.003][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.003][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:33.004][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:33.005][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.006][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.006][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.007][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.008][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.008][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.009][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:33.010][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:33.010][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.011][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.012][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.012][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.013][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.014][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.014][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.015][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.016][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.016][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.017][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:33.018][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:33.018][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.019][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.020][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.020][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.021][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.022][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.022][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.023][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.024][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.024][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.025][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.026][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.026][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.027][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.028][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:33.028][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:33.029][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.030][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.030][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:33.031][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:33.032][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.032][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.033][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.034][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.034][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.035][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.036][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.036][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.037][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.038][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.038][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.039][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.040][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.040][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.041][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.042][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.042][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.043][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.044][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.044][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.045][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.046][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.046][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:33.047][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:33.048][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.049][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.049][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:33.050][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:33.051][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.051][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.052][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.053][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.053][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.054][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.055][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:33.055][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:33.056][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.057][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.057][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.058][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.059][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.059][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.060][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.061][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.061][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.062][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.063][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:33.063][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:33.064][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.065][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.065][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.066][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.067][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.067][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.068][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.069][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.069][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.070][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.071][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.071][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.072][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.073][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.074][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:33.074][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:33.075][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.076][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.076][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:33.077][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:33.078][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:33.079][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:33.079][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.080][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.081][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.081][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.082][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.083][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.083][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.084][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.085][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.086][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.086][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.087][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.088][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.088][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.089][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.090][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.091][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.091][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.092][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.093][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.093][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.094][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.095][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:33.096][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:33.096][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.097][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.098][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:33.098][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:33.099][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.100][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.100][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.101][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.102][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.102][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.103][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:33.104][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:33.104][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.105][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.106][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.107][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.107][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.108][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.109][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.109][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.110][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.111][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.116][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:33.117][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:33.118][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.118][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.119][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.120][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.121][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.121][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.122][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.123][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.123][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.124][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.125][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.126][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.126][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.127][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.128][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:03:33.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:33.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:33.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:33.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:33.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:33.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:33.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.179][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:33.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:33.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.182][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:33.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:33.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.185][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:33.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:33.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:33.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:33.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:33.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:33.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:33.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:33.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.205][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:33.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:33.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.208][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:33.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:33.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.211][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:33.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:33.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.231][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:33.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:33.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.234][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:33.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:33.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.237][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:33.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:33.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.240][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.254][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.257][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.259][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.262][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.270][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167522372, N-[cyano(5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-3-yl)methyl]formamide, N-[cyano(5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-3-yl)methyl]formamide, N-[cyano(5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-3-yl)methyl]formamide, N-[cyano(5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-3-yl)methyl]methanamide, ...].
biodb.DEBUG[2023-04-15 08:03:33.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:33.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:33.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:33.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:33.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:33.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:33.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:33.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:33.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:33.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:33.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:33.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.311][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:33.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:33.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.314][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:33.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:33.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:33.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:33.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:33.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:33.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.332][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:33.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:33.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.335][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:33.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:33.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.348][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:33.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:33.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.351][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:33.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:33.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.362][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.367][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.370][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:33.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:33.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.372][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:33.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:33.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.375][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:33.376][private$selectFields]
biodb.TRACE[2023-04-15 08:03:33.376][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:33.377][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:33.378][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:33.378][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:33.379][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:33.380][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.380][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.381][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.382][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.382][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.383][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.384][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.384][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.385][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.386][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.386][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.387][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.388][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.388][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.389][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.390][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.390][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.391][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.391][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.392][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.393][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.393][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.394][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:33.395][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:33.395][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.396][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.397][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:33.397][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:33.398][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.399][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.399][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.400][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.401][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.401][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.402][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:33.403][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:33.403][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.404][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.405][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.405][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.406][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.407][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.407][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.408][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.409][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.409][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.410][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:33.411][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:33.411][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.412][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.413][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.413][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.414][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.415][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.415][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.416][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.417][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.417][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.418][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.419][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.420][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.420][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.421][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:33.422][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:33.422][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.423][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.424][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:33.424][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:33.425][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.426][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.426][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.427][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.428][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.428][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.429][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.430][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.430][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.431][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.432][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.432][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.433][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.434][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.434][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.435][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.436][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.436][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.437][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.438][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.438][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.439][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.440][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:33.440][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:33.441][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.442][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.442][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:33.443][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:33.444][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.444][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.445][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.446][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.446][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.447][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.448][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:33.448][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:33.449][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.450][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.450][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.451][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.452][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.452][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.453][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.454][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.454][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.455][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.456][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:33.456][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:33.457][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.458][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.458][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.459][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.460][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.460][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.461][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.462][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.463][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.463][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.464][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.465][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.465][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.466][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.467][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:33.467][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:33.468][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.469][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.469][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:33.470][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:33.471][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:33.471][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:33.472][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.473][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.473][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.474][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.475][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.475][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.476][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.477][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.477][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.478][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.479][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.479][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.480][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.481][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.481][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.482][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.483][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.483][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.484][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.485][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.485][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.486][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.487][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:33.487][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:33.488][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.489][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.489][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:33.490][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:33.491][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.491][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.492][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.493][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.493][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.494][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.495][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:33.495][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:33.496][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.497][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.497][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.498][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.499][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.499][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.500][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.501][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.501][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.502][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.503][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:33.503][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:33.504][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.505][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.505][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.506][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.507][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.507][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.508][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.509][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.509][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.510][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.511][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.511][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.512][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.513][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.513][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:03:33.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:33.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:33.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:33.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:33.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:33.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:33.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.568][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:33.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:33.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.570][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:33.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:33.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.573][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:33.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:33.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:33.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:33.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:33.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:33.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:33.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:33.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.592][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:33.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:33.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.595][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:33.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:33.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.597][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:33.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:33.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.617][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:33.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:33.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.619][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:33.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:33.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.622][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:33.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:33.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.630][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.633][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.639][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.644][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.647][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.655][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167522082, N-[1-cyano-2-(5,6-dihydro-4H-pyrrolo[1,2-b]pyrazol-3-yl)ethyl]formamide, N-[1-cyano-2-(5,6-dihydro-4H-pyrrolo[1,2-b]pyrazol-3-yl)ethyl]formamide, N-[1-cyano-2-(5,6-dihydro-4H-pyrrolo[1,2-b]pyrazol-3-yl)ethyl]formamide, N-[1-cyano-2-(5,6-dihydro-4H-pyrrolo[1,2-b]pyrazol-3-yl)ethyl]methanamide, ...].
biodb.DEBUG[2023-04-15 08:03:33.655][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:33.656][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:33.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:33.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:33.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:33.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:33.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:33.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:33.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:33.687][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:33.689][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:33.690][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2023-04-15 08:03:33.691][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:33.692][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2023-04-15 08:03:33.693][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:33.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:33.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:33.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:33.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:33.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:33.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:33.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:33.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:33.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:33.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:33.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:33.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.740][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:33.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:33.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.742][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:33.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:33.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:33.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:33.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:33.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:33.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.753][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.756][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:33.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:33.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.759][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:33.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:33.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.772][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:33.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:33.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.775][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:33.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:33.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.780][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.783][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.786][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.788][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.791][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.794][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:33.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:33.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.797][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:33.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:33.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.799][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:33.800][private$selectFields]
biodb.TRACE[2023-04-15 08:03:33.801][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:33.801][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:33.802][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:33.803][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:33.803][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:33.804][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.805][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.805][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.806][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.807][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.807][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.808][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.809][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.809][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.810][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.810][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.811][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.812][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.812][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.813][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.814][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.815][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.815][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.816][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.817][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.817][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.818][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.819][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:33.819][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:33.820][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.821][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.821][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:33.822][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:33.823][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.823][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.824][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.825][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.825][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.826][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.827][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:33.827][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:33.828][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.829][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.829][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.830][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.831][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.831][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.832][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.833][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.833][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.834][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.835][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:33.835][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:33.836][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.837][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.837][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.838][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.839][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.839][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.840][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.841][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.842][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.842][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.843][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.844][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.844][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.845][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.846][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:33.846][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:33.847][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.848][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.849][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:33.849][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:33.850][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.851][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.851][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.852][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.853][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.853][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.854][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.855][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.855][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.856][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.857][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.857][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.858][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.859][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.860][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.860][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.861][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.862][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.862][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.863][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.864][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.865][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.865][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:33.866][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:33.867][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.867][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.868][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:33.869][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:33.870][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.870][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.871][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.872][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.872][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.873][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.874][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:33.875][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:33.875][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.876][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.877][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.877][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.878][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.879][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.879][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.880][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.881][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.881][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.882][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:33.883][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:33.884][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.884][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.885][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.886][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.887][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.887][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.888][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.889][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.889][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.890][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.891][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.892][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.892][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.893][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.894][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:33.894][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:33.895][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.896][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.896][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:33.897][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:33.898][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:33.899][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:33.899][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.900][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.901][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.901][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.902][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.903][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.904][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.904][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.905][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.906][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.906][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.907][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.908][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.909][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.909][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.910][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.911][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.911][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.912][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.913][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.913][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.914][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.915][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:33.916][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:33.916][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.917][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.917][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:33.918][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:33.919][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.920][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.920][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.925][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:33.926][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.927][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.928][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:33.929][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:33.929][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.930][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.931][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.931][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:33.932][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.933][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.933][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.934][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:33.935][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.935][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.936][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:33.937][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:33.938][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.938][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.939][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.940][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:33.940][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.941][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.942][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.942][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:33.943][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.944][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.944][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.945][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:33.946][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.946][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.947][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:03:33.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:33.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:33.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:33.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:33.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:33.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:33.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:33.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.965][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:33.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.979][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:33.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:33.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:33.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:33.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:33.998][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:33.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:34.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.001][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:34.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:34.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.004][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:34.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:34.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:34.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:34.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:34.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:34.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:34.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:34.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.024][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:34.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:34.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.027][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:34.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:34.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.030][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:34.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:34.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.050][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:34.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:34.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:34.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:34.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.055][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:34.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:34.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.064][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.067][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.070][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.073][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.076][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.079][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.081][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.089][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167514507, methyl 4,7-difluoro-1-oxo-indane-2-carboxylate, 4,7-difluoro-3-oxo-1,2-dihydroindene-2-carboxylic acid methyl ester, methyl 4,7-difluoro-3-oxo-1,2-dihydroindene-2-carboxylate, methyl 4,7-bis(fluoranyl)-3-oxidanylidene-1,2-dihydroindene-2-carboxylate, ...].
biodb.DEBUG[2023-04-15 08:03:34.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:34.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:34.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:34.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:34.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:34.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:34.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:34.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:34.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:34.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:34.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:34.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.112][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.136][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:34.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:34.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.138][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:34.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:34.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.141][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:34.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:34.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:34.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:34.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.147][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.152][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:34.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:34.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.155][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:34.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:34.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.169][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:34.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:34.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.172][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:34.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:34.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.180][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.183][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.191][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:34.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:34.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.193][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:34.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:34.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.196][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:34.197][private$selectFields]
biodb.TRACE[2023-04-15 08:03:34.198][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:34.198][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:34.199][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:34.200][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:34.200][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:34.201][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.202][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.202][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.203][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.204][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.204][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.205][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.206][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.206][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.207][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.208][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.208][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.209][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.210][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.210][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.211][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.212][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.212][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.213][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.214][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.214][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.215][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.216][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:34.217][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:34.217][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.218][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.219][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:34.219][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:34.220][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.221][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.221][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.222][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.223][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.223][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.224][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:34.225][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:34.225][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.226][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.227][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.228][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.228][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.229][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.230][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.230][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.231][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.232][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.232][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:34.233][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:34.234][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.235][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.235][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.236][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.237][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.237][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.238][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.239][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.239][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.240][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.241][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.241][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.242][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.243][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.243][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:34.244][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:34.245][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.245][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.246][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:34.247][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:34.248][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.248][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.249][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.250][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.250][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.251][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.252][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.252][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.253][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.254][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.255][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.255][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.256][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.257][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.257][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.258][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.259][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.259][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.260][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.261][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.262][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.262][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.263][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:34.264][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:34.264][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.265][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.266][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:34.266][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:34.267][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.268][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.268][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.269][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.270][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.270][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.271][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:34.272][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:34.273][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.273][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.274][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.275][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.275][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.276][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.277][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.277][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.278][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.279][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.279][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:34.280][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:34.281][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.282][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.282][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.283][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.284][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.284][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.285][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.286][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.286][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.287][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.288][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.288][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.289][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.290][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.290][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:34.291][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:34.292][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.292][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.293][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:34.294][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:34.294][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:34.295][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:34.296][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.297][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.297][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.298][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.299][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.299][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.300][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.301][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.301][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.302][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.303][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.303][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.304][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.305][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.305][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.306][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.307][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.307][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.308][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.309][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.309][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.310][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.311][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:34.311][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:34.312][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.313][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.313][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:34.314][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:34.315][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.315][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.316][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.317][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.317][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.318][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.319][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:34.319][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:34.320][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.321][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.321][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.322][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.323][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.323][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.324][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.325][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.326][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.326][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.327][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:34.328][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:34.328][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.329][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.330][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.330][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.331][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.337][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.337][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.338][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.339][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.339][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.340][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.341][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.341][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.342][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.343][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:03:34.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:34.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:34.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:34.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:34.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:34.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:34.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.392][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:34.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:34.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.395][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:34.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:34.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.398][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:34.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:34.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:34.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:34.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:34.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:34.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:34.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:34.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.417][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:34.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:34.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.419][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:34.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:34.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.422][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:34.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:34.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.441][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:34.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:34.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.444][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:34.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:34.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.447][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:34.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:34.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.455][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.458][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.461][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.464][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.467][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.469][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.472][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.480][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167491345, 2-(2-fluoro-4,5-dihydroxy-cyclohexyl)ethylphosphonous acid, 2-(2-fluoro-4,5-dihydroxycyclohexyl)ethylphosphonous acid, 2-(2-fluoro-4,5-dihydroxycyclohexyl)ethylphosphonous acid, 2-[2-fluoranyl-4,5-bis(oxidanyl)cyclohexyl]ethylphosphonous acid, ...].
biodb.DEBUG[2023-04-15 08:03:34.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:34.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:34.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:34.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:34.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:34.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:34.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:34.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:34.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:34.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:34.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:34.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.521][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:34.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:34.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.524][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:34.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:34.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:34.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:34.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:34.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:34.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.540][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.543][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:34.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:34.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.545][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:34.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:34.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:34.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:34.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.561][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:34.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:34.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.566][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.572][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.574][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.577][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.580][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:34.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:34.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.582][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:34.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:34.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.585][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:34.585][private$selectFields]
biodb.TRACE[2023-04-15 08:03:34.586][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:34.587][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:34.587][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:34.588][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:34.589][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:34.589][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.590][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.591][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.591][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.592][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.592][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.593][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.594][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.594][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.595][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.596][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.596][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.597][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.598][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.598][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.599][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.600][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.600][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.601][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.602][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.602][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.603][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.604][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:34.604][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:34.605][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.606][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.606][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:34.607][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:34.608][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.608][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.609][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.610][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.610][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.611][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.611][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:34.612][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:34.613][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.613][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.614][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.615][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.615][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.616][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.617][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.617][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.618][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.619][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.619][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:34.620][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:34.621][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.621][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.622][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.623][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.623][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.624][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.624][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.625][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.626][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.626][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.627][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.628][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.628][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.629][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.630][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:34.630][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:34.631][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.632][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.632][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:34.633][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:34.634][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.635][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.635][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.636][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.637][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.637][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.638][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.639][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.639][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.640][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.640][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.641][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.642][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.642][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.643][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.644][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.644][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.645][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.646][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.646][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.647][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.648][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.648][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:34.649][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:34.650][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.650][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.651][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:34.652][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:34.653][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.653][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.654][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.655][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.655][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.656][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.657][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:34.657][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:34.658][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.659][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.659][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.660][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.661][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.661][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.662][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.663][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.663][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.664][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.665][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:34.665][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:34.666][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.667][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.667][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.668][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.669][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.669][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.670][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.671][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.671][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.672][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.673][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.674][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.674][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.675][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.675][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:34.676][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:34.677][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.677][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.678][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:34.679][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:34.680][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:34.680][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:34.681][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.682][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.682][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.683][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.684][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.684][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.685][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.686][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.686][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.687][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.687][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.688][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.689][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.689][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.690][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.691][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.691][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.692][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.693][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.693][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.694][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.695][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.695][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:34.696][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:34.697][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.697][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.698][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:34.699][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:34.699][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.700][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.701][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.701][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.702][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.703][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.703][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:34.704][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:34.705][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.705][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.706][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.707][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.707][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.708][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.709][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.709][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.710][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.711][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.711][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:34.712][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:34.713][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.713][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.714][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.715][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.715][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.716][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.716][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.717][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.718][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.718][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.719][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.720][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.721][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.721][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.722][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:03:34.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:34.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:34.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:34.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:34.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:34.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:34.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.750][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.753][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.766][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.777][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:34.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:34.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.779][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:34.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:34.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.782][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:34.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:34.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:34.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:34.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:34.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:34.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:34.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:34.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.801][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:34.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:34.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.803][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:34.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:34.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.806][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:34.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:34.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:34.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.825][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:34.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:34.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.828][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:34.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:34.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.831][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:34.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:34.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.834][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.839][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:34.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.842][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.845][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:34.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.854][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.857][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:34.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.866][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167438444, oxiran-2-ylmethyl 3,4,5-trihydroxybenzoate, 3,4,5-trihydroxybenzoic acid 2-oxiranylmethyl ester, oxiran-2-ylmethyl 3,4,5-trihydroxybenzoate, oxiran-2-ylmethyl 3,4,5-tris(oxidanyl)benzoate, ...].
biodb.DEBUG[2023-04-15 08:03:34.866][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:34.867][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-04-15 08:03:34.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:34.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:34.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:34.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:34.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:34.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:34.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:34.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:34.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:34.927][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:34.929][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:34.930][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2023-04-15 08:03:34.931][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:34.932][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2023-04-15 08:03:34.934][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:34.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:34.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:34.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:34.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:34.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:34.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:34.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:34.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:34.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:34.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:34.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:34.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:34.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:34.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.965][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:34.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:34.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.979][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:34.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:34.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:34.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.985][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:34.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:34.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:34.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:34.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:34.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:34.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:34.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:34.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:34.999][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:35.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:35.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.002][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:35.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:35.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:35.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:35.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:35.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:35.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.022][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.025][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.027][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.030][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.033][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.036][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.039][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:35.040][private$selectFields]
biodb.TRACE[2023-04-15 08:03:35.040][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:35.041][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:35.042][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:35.043][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:35.043][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:35.044][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.045][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.046][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.046][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.047][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.048][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.048][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.049][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.050][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.050][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.051][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.052][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.053][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.053][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.054][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.055][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.055][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.056][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.057][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.057][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.058][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.059][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.059][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:35.060][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:35.061][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.062][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.062][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:35.063][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:35.064][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.065][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.065][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.066][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.067][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.067][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.068][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:35.069][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:35.069][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.070][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.071][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.071][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.072][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.073][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.073][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.074][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.075][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.076][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.076][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:35.077][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:35.078][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.079][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.079][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.080][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.081][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.081][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.082][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.083][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.083][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.084][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.085][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.086][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.086][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.087][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.088][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:35.088][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:35.089][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.090][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.091][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.091][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.092][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.093][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.093][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.094][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.095][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.095][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.096][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.097][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.098][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.098][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.099][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.100][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.100][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.101][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.102][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.103][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.103][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.104][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.105][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:35.105][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:35.106][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.107][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.107][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:35.108][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:35.109][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.109][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.110][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.111][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.111][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.112][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.113][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:35.113][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:35.114][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.115][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.115][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.116][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.117][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.118][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.118][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.119][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.120][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.120][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.121][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:35.122][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:35.122][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.123][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.124][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.124][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.125][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.126][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.127][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.127][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.128][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.129][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.129][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.130][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.131][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.132][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.132][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:35.133][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:35.134][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:35.134][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:35.135][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.136][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.136][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.137][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.138][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.139][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.139][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.140][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.141][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.141][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.142][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.143][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.144][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.144][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.150][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.151][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.151][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.152][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.153][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.153][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.154][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.155][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.155][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:35.156][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:35.157][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.157][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.158][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:35.159][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:35.159][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.160][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.161][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.161][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.162][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.163][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.163][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:35.164][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:35.165][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.165][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.166][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.167][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.167][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.168][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.169][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.169][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.170][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.171][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.171][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:35.172][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:35.172][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.173][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.174][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.174][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.175][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.176][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.176][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.177][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.178][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.179][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.179][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.180][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.181][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.181][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.182][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:03:35.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:35.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:35.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:35.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:35.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:35.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:35.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.233][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:35.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:35.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.236][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:35.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:35.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.239][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:35.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:35.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:35.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:35.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:35.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:35.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:35.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:35.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.250][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.253][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.259][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:35.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:35.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.261][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:35.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:35.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.264][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:35.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:35.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.284][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:35.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:35.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.287][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:35.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:35.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.290][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:35.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:35.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.293][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.295][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.301][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.304][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.307][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.310][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.312][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.315][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.323][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167523845, 2-methyl-2-propylsulfanyl-hexanoic acid, 2-methyl-2-(propylthio)hexanoic acid, 2-methyl-2-propylsulfanylhexanoic acid, 2-methyl-2-propylsulfanyl-hexanoic acid, ...].
biodb.DEBUG[2023-04-15 08:03:35.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:35.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:35.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:35.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:35.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:35.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:35.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:35.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:35.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:35.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:35.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:35.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.361][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.369][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:35.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:35.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.371][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:35.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:35.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:35.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:35.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:35.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:35.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.385][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:35.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:35.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.388][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:35.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:35.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.402][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:35.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:35.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.404][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:35.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:35.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.407][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.410][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.413][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.415][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.418][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.421][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.424][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:35.425][private$selectFields]
biodb.TRACE[2023-04-15 08:03:35.425][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:35.426][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:35.427][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:35.427][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:35.428][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:35.429][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.429][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.430][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.431][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.431][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.432][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.433][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.433][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.434][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.435][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.435][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.436][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.437][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.437][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.438][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.439][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.439][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.440][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.440][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.441][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.442][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.443][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.443][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:35.444][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:35.445][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.445][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.446][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:35.447][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:35.447][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.448][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.449][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.449][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.450][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.451][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.451][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:35.452][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:35.453][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.454][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.454][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.455][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.456][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.456][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.457][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.458][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.458][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.459][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.460][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:35.460][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:35.461][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.462][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.462][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.463][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.464][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.464][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.465][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.466][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.467][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.467][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.468][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.469][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.469][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.470][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.471][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:35.471][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:35.472][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.473][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.473][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.474][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.475][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.476][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.476][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.477][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.478][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.478][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.479][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.480][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.481][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.481][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.482][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.483][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.483][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.484][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.485][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.485][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.486][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.487][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.487][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:35.488][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:35.489][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.489][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.490][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:35.491][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:35.492][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.492][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.493][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.494][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.495][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.495][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.496][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:35.497][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:35.497][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.498][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.499][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.499][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.500][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.501][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.501][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.502][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.503][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.504][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.504][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:35.505][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:35.506][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.506][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.507][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.508][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.509][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.509][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.510][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.511][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.511][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.512][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.513][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.513][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.514][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.515][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.515][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:35.516][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:35.517][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:35.518][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:35.518][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.519][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.520][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.520][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.521][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.522][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.522][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.523][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.524][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.525][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.525][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.526][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.527][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.527][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.528][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.529][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.530][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.530][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.531][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.532][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.533][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.533][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.534][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:35.535][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:35.535][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.536][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.537][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:35.538][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:35.538][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.539][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.540][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.540][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.541][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.542][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.542][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:35.543][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:35.544][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.545][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.545][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.546][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.547][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.547][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.548][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.549][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.550][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.550][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.551][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:35.552][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:35.552][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.558][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.558][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.559][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.560][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.560][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.561][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.562][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.562][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.563][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.564][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.564][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.565][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.566][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.566][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:03:35.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:35.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:35.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:35.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:35.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:35.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:35.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.617][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:35.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:35.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.619][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:35.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:35.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.622][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:35.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:35.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:35.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:35.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:35.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:35.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:35.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:35.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.641][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:35.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:35.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.644][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:35.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:35.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.647][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:35.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:35.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.667][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:35.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:35.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.670][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:35.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:35.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.673][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:35.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:35.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.681][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.684][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.687][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.690][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.693][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.696][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.699][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.707][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167523844, 2-methyl-2-propylsulfonio-hexanoate, 2-methyl-2-propylsulfoniohexanoate, 2-methyl-2-propylsulfoniohexanoate, 2-methyl-2-propylsulfonio-hexanoate, ...].
biodb.DEBUG[2023-04-15 08:03:35.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:35.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:35.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:35.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:35.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:35.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:35.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:35.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:35.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:35.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:35.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:35.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.735][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.741][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.749][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:35.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:35.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.752][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:35.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:35.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:35.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:35.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:35.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:35.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.768][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.770][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:35.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:35.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.773][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:35.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:35.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.786][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:35.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:35.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.789][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:35.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:35.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.792][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.797][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.800][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.803][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.805][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.808][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:35.809][private$selectFields]
biodb.TRACE[2023-04-15 08:03:35.810][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:35.810][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:35.811][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:35.812][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:35.812][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:35.813][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.814][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.814][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.815][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.816][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.816][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.817][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.818][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.818][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.819][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.820][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.820][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.821][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.822][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.823][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.823][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.824][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.825][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.825][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.826][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.827][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.828][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.828][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:35.829][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:35.830][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.831][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.831][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:35.832][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:35.833][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.833][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.834][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.835][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.836][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.836][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.837][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:35.838][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:35.838][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.839][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.840][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.841][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.841][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.842][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.843][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.843][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.844][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.845][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.845][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:35.846][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:35.847][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.847][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.848][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.849][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.849][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.850][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.851][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.851][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.852][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.853][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.853][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.854][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.855][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.855][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.856][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:35.857][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:35.858][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.858][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.859][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.860][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.860][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.861][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.862][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.862][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.863][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.864][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.865][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.865][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.866][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.867][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.867][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.868][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.869][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.869][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.870][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.871][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.871][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.872][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.873][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:35.873][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:35.874][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.875][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.875][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:35.876][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:35.877][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.877][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.878][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.879][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.879][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.880][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.881][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:35.882][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:35.882][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.883][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.884][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.884][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.885][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.886][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.886][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.887][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.888][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.889][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.889][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:35.890][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:35.891][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.891][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.892][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.893][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.894][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.894][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.895][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.896][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.896][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.897][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.898][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.899][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.899][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.900][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.901][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:35.902][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:35.902][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:35.903][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:35.904][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.905][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.905][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.906][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.907][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.907][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.908][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.909][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.909][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.910][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.911][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.912][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.912][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.913][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.914][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.914][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.915][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.916][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.916][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.917][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.918][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.919][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.919][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:35.920][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:35.921][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.921][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.922][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:35.923][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:35.924][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.924][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.925][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.926][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:35.926][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.927][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.928][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:35.929][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:35.929][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.930][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.931][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.931][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:35.932][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.933][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.933][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.934][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:35.935][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.935][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.936][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:35.937][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:35.938][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.938][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.939][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.940][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:35.941][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.941][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.942][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.943][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:35.944][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.944][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.945][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.946][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:35.946][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.947][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.948][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:03:35.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:35.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:35.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:35.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:35.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:35.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:35.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:35.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:35.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.979][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:35.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:35.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:35.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:35.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:35.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.004][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:36.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:36.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.006][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:36.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:36.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.009][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:36.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:36.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:36.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:36.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:36.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:36.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:36.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:36.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.023][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.029][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:36.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:36.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.031][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:36.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:36.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.034][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:36.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:36.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.055][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:36.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:36.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.058][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:36.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:36.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.060][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:36.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:36.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.064][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.066][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.073][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.075][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.078][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.082][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.085][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.088][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.095][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167523841, 2-butylsulfanyl-2,3-dimethyl-butanoic acid, 2-(butylthio)-2,3-dimethylbutanoic acid, 2-butylsulfanyl-2,3-dimethylbutanoic acid, 2-butylsulfanyl-2,3-dimethyl-butanoic acid, ...].
biodb.DEBUG[2023-04-15 08:03:36.096][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:36.097][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:36.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:36.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:36.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:36.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:36.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:36.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:36.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:36.129][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:36.132][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:36.133][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2023-04-15 08:03:36.133][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:36.134][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2023-04-15 08:03:36.136][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:36.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:36.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:36.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:36.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:36.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:36.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:36.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:36.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:36.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:36.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:36.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:36.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.184][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:36.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:36.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.187][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:36.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:36.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:36.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:36.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:36.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:36.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.201][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:36.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:36.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.204][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:36.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:36.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.218][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:36.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:36.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.220][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:36.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:36.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.223][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.226][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.231][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.234][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.237][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.239][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:36.240][private$selectFields]
biodb.TRACE[2023-04-15 08:03:36.241][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:36.241][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:36.242][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:36.243][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:36.244][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:36.244][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.245][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.246][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.246][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.247][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.248][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.248][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.249][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.250][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.250][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.251][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.252][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.252][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.253][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.254][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.255][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.255][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.256][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.256][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.257][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.258][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.258][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.259][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:36.260][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:36.260][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.261][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.262][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:36.263][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:36.263][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.264][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.265][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.265][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.266][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.267][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.267][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:36.268][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:36.269][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.269][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.270][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.271][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.271][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.272][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.273][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.274][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.274][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.275][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.276][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:36.277][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:36.277][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.278][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.279][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.279][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.280][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.281][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.282][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.282][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.283][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.284][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.284][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.285][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.286][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.286][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.287][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:36.288][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:36.289][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.289][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.290][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.291][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.292][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.292][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.293][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.294][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.294][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.295][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.296][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.297][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.297][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.298][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.299][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.299][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.300][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.301][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.301][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.302][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.303][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.303][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.304][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:36.305][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:36.306][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.306][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.307][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:36.308][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:36.308][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.309][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.310][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.310][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.311][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.312][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.313][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:36.313][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:36.314][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.315][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.315][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.316][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.317][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.318][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.318][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.319][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.320][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.320][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.321][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:36.322][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:36.323][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.323][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.324][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.325][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.325][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.326][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.327][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.327][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.328][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.329][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.329][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.330][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.331][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.331][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.332][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:36.333][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:36.334][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:36.334][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:36.335][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.336][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.336][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.337][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.338][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.338][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.339][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.340][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.340][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.341][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.342][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.342][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.343][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.344][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.344][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.345][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.346][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.346][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.347][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.348][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.348][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.349][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.350][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:36.351][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:36.351][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.352][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.352][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:36.353][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:36.354][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.355][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.355][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.356][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.357][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.357][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.358][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:36.359][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:36.360][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.360][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.361][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.362][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.362][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.363][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.364][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.364][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.365][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.366][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.366][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:36.367][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:36.368][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.369][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.369][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.370][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.371][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.371][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.372][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.373][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.374][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.374][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.380][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.381][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.381][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.382][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.383][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:03:36.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:36.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:36.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:36.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:36.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:36.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:36.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.433][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:36.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:36.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.436][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:36.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:36.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.439][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:36.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:36.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:36.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:36.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:36.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:36.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:36.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:36.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.450][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.453][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.456][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.458][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:36.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:36.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.461][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:36.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:36.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.464][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:36.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:36.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.485][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:36.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:36.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:36.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:36.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.491][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:36.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:36.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.503][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.506][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.508][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.511][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.514][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.517][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.526][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167527736, 1-[4-(ethoxymethoxy)phenyl]-2-sulfanyl-ethanone, 1-[4-(ethoxymethoxy)phenyl]-2-mercaptoethanone, 1-[4-(ethoxymethoxy)phenyl]-2-sulfanylethanone, 1-[4-(ethoxymethoxy)phenyl]-2-sulfanyl-ethanone, ...].
biodb.DEBUG[2023-04-15 08:03:36.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:36.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:36.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:36.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:36.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:36.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:36.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:36.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:36.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:36.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:36.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:36.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.550][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.568][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.571][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:36.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:36.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:36.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:36.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:36.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:36.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:36.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:36.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.596][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:36.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:36.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.599][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:36.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:36.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:36.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:36.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.616][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:36.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:36.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.619][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.625][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.628][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.630][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.633][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.636][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:36.637][private$selectFields]
biodb.TRACE[2023-04-15 08:03:36.637][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:36.638][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:36.639][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:36.639][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:36.640][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:36.641][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.641][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.642][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.643][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.643][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.644][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.645][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.645][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.646][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.647][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.647][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.648][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.649][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.649][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.650][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.651][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.651][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.652][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.653][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.653][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.654][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.655][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.655][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:36.656][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:36.657][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.657][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.658][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:36.659][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:36.659][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.660][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.661][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.662][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.662][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.663][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.663][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:36.664][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:36.665][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.665][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.666][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.667][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.667][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.668][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.669][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.669][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.670][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.671][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.671][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:36.672][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:36.673][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.674][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.674][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.675][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.676][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.676][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.677][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.678][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.678][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.679][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.680][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.680][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.681][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.682][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.682][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:36.683][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:36.684][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.684][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.685][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.686][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.687][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.687][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.688][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.689][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.689][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.690][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.691][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.691][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.692][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.693][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.694][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.694][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.695][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.696][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.696][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.697][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.698][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.698][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.699][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:36.700][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:36.700][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.701][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.702][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:36.703][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:36.703][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.704][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.705][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.705][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.706][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.707][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.707][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:36.708][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:36.709][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.709][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.710][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.711][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.711][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.712][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.713][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.713][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.714][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.715][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.715][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:36.716][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:36.717][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.717][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.718][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.719][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.720][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.720][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.721][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.722][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.722][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.723][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.724][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.724][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.725][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.726][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.726][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2023-04-15 08:03:36.727][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2023-04-15 08:03:36.728][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:36.729][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:36.729][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.730][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.731][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.731][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.732][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.733][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.734][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.734][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.735][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.736][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.737][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.737][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.738][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.739][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.740][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.740][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.741][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.742][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.742][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.743][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.744][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.744][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.745][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:36.746][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:36.747][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.747][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.748][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:36.749][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:36.749][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.750][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.751][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.752][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.752][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.753][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.754][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.754][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.755][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.756][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.756][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.757][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.758][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.759][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.759][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:36.760][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:36.761][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.761][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.762][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.763][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.763][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.764][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.765][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.766][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.766][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.767][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.768][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.768][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.769][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.770][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.771][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:03:36.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:36.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:36.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:36.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:36.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:36.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:36.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.829][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:36.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:36.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.832][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:36.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:36.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.834][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:36.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:36.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:36.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:36.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:36.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:36.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:36.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:36.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.872][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:36.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:36.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:36.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:36.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.877][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:36.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:36.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.880][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.888][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.891][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.894][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:36.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.897][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.900][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.903][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:36.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.910][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167513889, (1R)-1-deuterio-1-[3-(difluoromethyl)-2-fluoro-phenyl]ethanamine;hydrochloride, (1R)-1-deuterio-1-[3-(difluoromethyl)-2-fluorophenyl]ethanamine;hydrochloride, (1R)-1-deuterio-1-[3-(difluoromethyl)-2-fluorophenyl]ethanamine;hydrochloride, (1R)-1-[3-[bis(fluoranyl)methyl]-2-fluoranyl-phenyl]-1-deuterio-ethanamine;hydrochloride, ...].
biodb.DEBUG[2023-04-15 08:03:36.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:36.912][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:36.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:36.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:36.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:36.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:36.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:36.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:36.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:36.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:36.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:36.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:36.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:36.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:36.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:36.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:36.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.953][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:36.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:36.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.956][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:36.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:36.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:36.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:36.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.961][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:36.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:36.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:36.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.970][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:36.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:36.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.973][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:36.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:36.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:36.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:36.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.988][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:36.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:36.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.990][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:36.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:36.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:36.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:36.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:36.999][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.002][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.010][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.013][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.016][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:37.017][private$selectFields]
biodb.TRACE[2023-04-15 08:03:37.018][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:37.018][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:37.019][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:37.020][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:37.020][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:37.021][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.022][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.023][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.023][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.024][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.025][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.025][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.026][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.027][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.027][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.028][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.029][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.030][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.030][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.031][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.032][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.033][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.033][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.034][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.035][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.035][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.036][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.037][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:37.037][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:37.038][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.039][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.039][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:37.040][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:37.041][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.042][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.042][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.043][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.044][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.044][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.045][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:37.046][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:37.046][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.047][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.048][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.048][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.049][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.050][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.050][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.051][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.052][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.052][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.053][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:37.054][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:37.054][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.055][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.056][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.056][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.057][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.058][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.059][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.059][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.060][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.061][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.061][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.062][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.063][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.064][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.064][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:37.065][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:37.066][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.066][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.067][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.068][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.069][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.069][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.070][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.071][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.071][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.072][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.073][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.073][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.074][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.075][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.075][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.076][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.077][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.077][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.078][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.079][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.080][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.080][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.081][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:37.082][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:37.082][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.083][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.084][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:37.084][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:37.085][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.086][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.087][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.087][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.088][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.089][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.090][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:37.090][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:37.091][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.092][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.092][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.093][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.094][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.094][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.095][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.096][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.097][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.097][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.098][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:37.099][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:37.099][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.100][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.101][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.102][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.102][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.103][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.104][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.104][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.105][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.106][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.107][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.107][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.108][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.109][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.109][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:37.110][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:37.111][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:37.112][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:37.112][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.113][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.114][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.115][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.115][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.116][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.117][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.117][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.118][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.119][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.119][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.120][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.121][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.121][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.122][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.123][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.124][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.124][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.125][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.126][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.126][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.127][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.128][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:37.128][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:37.129][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.130][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.130][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:37.131][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:37.132][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.133][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.133][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.134][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.135][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.135][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.136][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:37.137][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:37.137][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.138][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.139][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.140][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.140][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.141][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.142][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.142][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.143][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.144][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.144][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:37.145][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:37.146][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.146][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.147][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.148][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.148][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.149][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.150][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.151][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.151][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.152][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.153][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.153][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.154][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.155][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.156][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:03:37.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:37.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:37.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:37.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:37.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:37.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:37.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.170][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.208][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:37.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:37.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:37.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:37.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.214][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:37.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:37.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:37.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:37.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:37.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:37.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:37.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:37.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.237][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.240][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:37.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:37.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.242][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:37.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:37.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.245][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:37.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:37.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.265][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:37.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:37.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.268][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:37.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:37.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.271][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:37.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:37.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.274][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.283][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.286][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.289][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.293][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.296][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.299][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.307][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167510581, 9-hydroxy-9H-fluorene-3-carboxylic acid, 9-hydroxy-9H-fluorene-3-carboxylic acid, 9-hydroxy-9H-fluorene-3-carboxylic acid, 9-oxidanyl-9H-fluorene-3-carboxylic acid, ...].
biodb.DEBUG[2023-04-15 08:03:37.308][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:37.308][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:37.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:37.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:37.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:37.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:37.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:37.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:37.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:37.346][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:37.348][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:37.349][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2023-04-15 08:03:37.350][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:37.351][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2023-04-15 08:03:37.352][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:37.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:37.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:37.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:37.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:37.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:37.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:37.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:37.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:37.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:37.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:37.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:37.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.397][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:37.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:37.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.400][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:37.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:37.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:37.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:37.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:37.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:37.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.414][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:37.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:37.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.417][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:37.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:37.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.436][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:37.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:37.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.439][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:37.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:37.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.444][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.447][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.450][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.452][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.455][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.458][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:37.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:37.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.461][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:37.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:37.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.463][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:37.464][private$selectFields]
biodb.TRACE[2023-04-15 08:03:37.465][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:37.465][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:37.466][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:37.467][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:37.467][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:37.468][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.469][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.469][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.470][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.471][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.471][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.472][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.473][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.473][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.474][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.475][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.475][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.476][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.477][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.477][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.478][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.479][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.480][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.480][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.481][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.482][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.482][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.483][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:37.484][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:37.484][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.485][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.486][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:37.486][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:37.487][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.488][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.488][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.489][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.490][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.491][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.491][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:37.492][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:37.493][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.493][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.494][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.495][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.495][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.496][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.497][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.497][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.498][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.499][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.499][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:37.500][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:37.501][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.501][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.502][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.503][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.504][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.504][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.505][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.506][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.506][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.507][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.508][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.508][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.509][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.510][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.510][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:37.511][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:37.512][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.512][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.513][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:37.514][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:37.514][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.515][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.516][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.517][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.517][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.518][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.519][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.519][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.520][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.521][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.521][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.522][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.523][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.524][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.524][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.525][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.526][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.526][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.527][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.528][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.528][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.529][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.530][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:37.530][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:37.531][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.532][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.533][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:37.533][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:37.534][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.535][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.535][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.536][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.537][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.537][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.538][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:37.539][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:37.540][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.540][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.541][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.542][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.542][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.543][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.544][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.544][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.545][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.546][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.547][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:37.547][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:37.548][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.549][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.549][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.550][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.551][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.551][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.552][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.553][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.553][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.554][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.555][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.556][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.556][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.557][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.558][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:37.558][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:37.559][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.560][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.560][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:37.561][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:37.562][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:37.562][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:37.563][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.564][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.564][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.565][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.566][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.566][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.567][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.568][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.569][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.569][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.570][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.571][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.571][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.572][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.572][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.573][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.574][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.575][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.575][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.576][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.577][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.577][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.578][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:37.579][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:37.579][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.580][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.581][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:37.581][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:37.582][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.583][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.583][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.584][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.585][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.585][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.586][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:37.587][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:37.587][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.588][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.589][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.589][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.590][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.591][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.591][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.592][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.593][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.593][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.594][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:37.595][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:37.596][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.596][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.597][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.598][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.598][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.599][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.600][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.600][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.601][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.602][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.602][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.603][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.604][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.604][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.605][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:03:37.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:37.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:37.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:37.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:37.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:37.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:37.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.646][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.655][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.660][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.663][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:37.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:37.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.666][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:37.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:37.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.669][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:37.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:37.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:37.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:37.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:37.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:37.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:37.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:37.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.689][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:37.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:37.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.692][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:37.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:37.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.695][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:37.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:37.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.714][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:37.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:37.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.717][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:37.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:37.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.720][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:37.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:37.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.729][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.732][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.735][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.738][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.741][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.744][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.747][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.755][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167523845, 2-methyl-2-propylsulfanyl-hexanoic acid, 2-methyl-2-(propylthio)hexanoic acid, 2-methyl-2-propylsulfanylhexanoic acid, 2-methyl-2-propylsulfanyl-hexanoic acid, ...].
biodb.DEBUG[2023-04-15 08:03:37.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:37.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:37.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:37.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:37.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:37.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:37.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:37.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:37.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:37.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:37.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:37.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.779][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.796][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.799][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:37.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:37.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.802][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:37.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:37.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:37.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:37.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:37.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:37.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.816][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:37.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:37.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.819][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:37.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:37.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.833][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:37.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:37.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.836][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:37.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:37.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.839][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.850][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.853][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.856][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.859][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.862][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:37.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:37.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.864][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:37.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:37.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.867][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:37.868][private$selectFields]
biodb.TRACE[2023-04-15 08:03:37.869][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:37.869][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:37.870][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:37.871][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:37.871][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:37.872][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.873][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.873][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.874][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.875][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.875][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.876][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.877][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.877][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.878][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.879][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.879][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.880][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.881][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.881][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.882][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.883][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.883][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.884][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.885][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.886][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.886][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.887][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:37.888][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:37.888][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.889][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.890][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:37.890][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:37.891][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.892][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.892][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.893][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.894][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.895][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.895][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:37.896][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:37.897][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.897][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.898][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.899][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.899][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.900][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.902][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.903][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.904][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.904][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.905][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:37.906][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:37.906][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.907][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.908][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.908][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.909][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.910][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.911][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.911][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.912][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.913][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.913][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.914][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.915][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.915][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.916][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:37.917][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:37.917][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.918][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.919][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:37.919][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:37.920][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.921][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.922][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.922][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.923][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.924][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.924][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.925][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.926][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.926][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.927][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.928][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.929][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.929][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.930][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.931][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.931][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.932][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.933][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.933][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.934][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.935][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.935][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:37.936][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:37.937][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.938][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.938][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:37.939][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:37.940][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.940][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.941][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.942][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.942][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.943][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.944][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:37.944][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:37.945][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.946][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.947][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.947][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.948][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.949][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.949][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.950][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:37.951][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.951][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.952][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:37.953][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:37.954][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.954][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.955][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.956][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:37.956][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.957][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.958][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.958][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:37.959][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.960][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.960][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.961][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:37.962][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.963][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.963][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:37.964][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:37.965][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.965][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.966][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:37.967][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:37.968][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:37.969][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:37.969][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.970][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.971][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.971][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:37.972][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.973][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.974][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.974][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:37.975][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.976][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.976][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.977][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:37.978][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.979][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.979][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.980][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:37.981][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.981][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.982][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.983][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:37.984][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.984][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.985][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:37.986][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:37.986][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.987][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.988][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:37.989][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:37.989][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.990][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.991][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.991][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:37.992][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.993][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.994][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:37.994][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:37.995][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.996][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:37.997][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.997][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:37.998][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:37.999][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.000][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.000][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.001][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.002][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.003][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:38.003][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:38.004][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.005][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.006][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.006][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.007][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.008][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.008][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.009][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.010][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.011][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.011][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.012][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.013][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.014][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.014][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:03:38.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:38.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:38.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:38.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:38.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:38.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:38.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.075][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:38.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:38.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.078][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:38.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:38.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.080][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:38.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:38.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:38.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:38.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:38.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:38.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:38.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:38.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.100][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:38.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:38.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.103][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:38.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:38.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.106][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:38.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:38.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.125][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:38.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:38.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.128][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:38.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:38.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.131][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:38.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:38.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.142][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.145][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.147][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.150][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.153][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.156][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.164][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167523844, 2-methyl-2-propylsulfonio-hexanoate, 2-methyl-2-propylsulfoniohexanoate, 2-methyl-2-propylsulfoniohexanoate, 2-methyl-2-propylsulfonio-hexanoate, ...].
biodb.DEBUG[2023-04-15 08:03:38.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:38.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:38.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:38.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:38.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:38.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:38.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:38.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:38.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:38.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:38.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:38.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.184][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.206][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:38.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:38.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.209][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:38.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:38.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:38.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:38.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:38.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:38.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.223][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:38.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:38.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.226][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:38.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:38.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.240][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:38.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:38.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.242][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:38.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:38.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.248][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.254][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.256][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.259][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.262][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:38.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:38.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.270][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:38.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:38.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.273][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:38.274][private$selectFields]
biodb.TRACE[2023-04-15 08:03:38.274][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:38.275][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:38.276][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:38.276][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:38.277][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:38.278][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.279][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.279][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.280][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.281][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.281][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.282][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.283][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.284][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.285][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.285][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.286][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.287][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.287][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.288][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.289][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.290][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.290][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.291][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.292][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.292][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.293][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.294][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:38.295][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:38.295][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.296][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.297][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:38.298][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:38.298][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.299][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.300][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.300][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.301][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.302][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.303][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:38.303][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:38.304][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.305][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.305][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.306][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.307][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.308][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.308][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.309][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.310][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.310][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.311][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:38.312][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:38.313][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.313][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.314][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.315][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.315][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.316][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.317][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.318][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.318][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.319][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.320][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.320][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.321][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.322][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.323][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:38.323][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:38.324][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.325][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.325][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:38.326][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:38.327][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.328][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.328][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.329][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.330][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.331][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.331][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.332][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.333][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.333][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.334][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.335][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.336][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.336][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.337][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.338][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.338][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.339][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.340][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.341][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.341][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.342][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.343][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:38.343][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:38.344][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.345][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.346][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:38.346][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:38.347][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.348][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.348][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.349][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.350][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.350][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.351][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:38.352][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:38.353][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.353][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.354][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.355][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.355][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.356][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.357][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.358][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.358][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.359][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.360][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:38.360][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:38.361][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.362][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.362][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.363][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.364][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.365][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.365][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.366][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.367][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.367][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.368][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.369][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.370][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.370][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.371][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:38.372][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:38.372][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.373][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.374][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:38.375][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:38.376][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:38.376][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:38.377][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.378][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.378][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.379][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.380][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.381][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.381][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.382][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.383][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.383][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.384][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.385][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.386][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.386][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.387][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.388][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.389][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.389][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.390][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.391][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.391][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.392][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.393][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:38.393][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:38.394][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.395][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.395][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:38.396][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:38.397][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.398][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.398][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.399][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.400][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.400][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.401][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:38.402][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:38.403][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.403][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.404][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.405][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.406][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.406][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.407][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.408][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.408][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.409][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.410][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:38.410][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:38.411][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.412][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.412][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.413][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.414][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.414][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.415][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.416][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.417][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.417][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.418][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.419][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.420][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.420][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.421][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:03:38.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:38.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:38.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:38.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:38.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:38.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:38.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.474][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:38.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:38.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.483][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:38.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:38.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.485][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:38.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:38.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:38.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:38.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:38.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:38.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:38.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:38.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.503][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.505][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:38.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:38.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.508][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:38.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:38.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.511][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:38.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:38.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.531][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:38.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:38.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.534][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:38.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:38.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.537][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:38.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:38.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.545][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.548][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.551][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.554][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.557][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.560][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.563][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.571][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167523841, 2-butylsulfanyl-2,3-dimethyl-butanoic acid, 2-(butylthio)-2,3-dimethylbutanoic acid, 2-butylsulfanyl-2,3-dimethylbutanoic acid, 2-butylsulfanyl-2,3-dimethyl-butanoic acid, ...].
biodb.DEBUG[2023-04-15 08:03:38.571][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:38.572][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2023-04-15 08:03:38.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:38.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:38.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:38.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:38.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:38.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:38.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:38.604][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2023-04-15 08:03:38.606][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-04-15 08:03:38.607][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2023-04-15 08:03:38.608][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-04-15 08:03:38.609][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2023-04-15 08:03:38.610][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-04-15 08:03:38.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:38.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:38.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:38.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:38.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:38.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:38.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:38.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:38.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:38.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:38.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:38.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.641][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.650][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.652][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:38.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:38.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.655][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:38.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:38.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:38.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:38.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.661][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:38.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:38.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.669][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:38.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:38.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.672][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:38.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:38.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:38.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:38.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.695][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:38.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:38.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.700][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.703][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.711][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.714][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:38.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:38.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.717][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:38.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:38.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.720][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:38.720][private$selectFields]
biodb.TRACE[2023-04-15 08:03:38.721][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:38.722][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:38.722][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:38.723][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:38.724][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:38.724][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.725][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.726][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.726][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.727][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.728][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.728][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.729][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.730][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.730][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.731][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.732][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.732][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.733][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.734][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.734][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.735][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.736][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.736][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.737][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.738][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.739][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.739][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:38.740][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:38.741][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.741][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.742][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:38.743][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:38.743][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.744][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.745][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.745][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.746][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.747][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.747][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:38.748][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:38.749][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.749][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.750][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.751][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.751][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.752][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.753][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.753][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.754][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.755][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.755][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:38.756][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:38.757][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.757][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.758][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.759][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.760][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.760][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.761][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.762][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.762][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.763][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.764][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.764][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.765][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.766][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.766][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:38.767][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:38.768][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.768][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.769][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:38.770][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:38.770][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.771][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.772][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.772][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.773][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.774][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.774][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.775][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.776][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.776][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.777][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.778][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.778][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.779][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.780][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.780][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.781][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.782][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.782][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.783][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.784][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.785][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.785][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:38.786][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:38.787][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.787][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.788][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:38.789][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:38.790][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.790][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.791][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.792][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.792][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.793][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.794][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:38.794][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:38.795][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.796][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.796][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.797][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.798][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.798][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.799][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.800][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.800][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.801][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.802][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:38.803][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:38.803][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.804][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.804][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.805][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.806][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.807][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.807][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.808][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.809][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.809][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.810][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.811][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.811][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.812][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.813][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:38.813][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:38.814][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.815][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.815][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:38.816][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:38.817][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:38.818][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:38.818][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.819][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.820][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.820][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.821][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.822][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.822][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.823][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.824][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.824][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.825][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.826][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.826][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.827][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.828][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.828][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.829][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.830][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.830][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.831][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.832][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.833][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.833][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:38.834][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:38.835][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.835][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.836][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:38.837][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:38.837][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.838][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.839][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.839][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.840][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.841][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.841][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:38.842][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:38.843][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.844][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.844][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.845][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.846][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.846][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.847][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.848][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.849][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.849][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.850][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:38.851][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:38.851][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.852][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.853][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.853][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.854][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.855][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.855][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.856][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.857][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.858][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.858][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.859][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.860][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.860][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.861][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:03:38.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:38.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:38.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:38.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:38.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:38.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:38.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:38.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:38.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.893][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.896][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:38.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.907][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:38.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:38.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.918][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:38.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:38.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.921][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:38.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:38.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.924][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:38.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:38.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.927][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:38.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:38.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:38.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:38.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:38.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:38.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:38.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.943][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:38.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:38.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.946][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:38.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:38.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.949][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:38.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:38.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:38.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:38.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.968][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:38.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:38.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:38.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:38.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.974][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:38.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:38.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.979][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:38.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.988][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.991][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:38.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.994][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.997][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:38.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:38.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:38.999][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.007][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167527736, 1-[4-(ethoxymethoxy)phenyl]-2-sulfanyl-ethanone, 1-[4-(ethoxymethoxy)phenyl]-2-mercaptoethanone, 1-[4-(ethoxymethoxy)phenyl]-2-sulfanylethanone, 1-[4-(ethoxymethoxy)phenyl]-2-sulfanyl-ethanone, ...].
biodb.DEBUG[2023-04-15 08:03:39.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:39.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:39.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:39.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:39.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:39.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:39.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:39.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:39.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:39.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:39.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:39.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.038][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.049][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:39.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:39.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.052][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:39.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:39.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:39.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:39.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:39.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:39.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.066][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:39.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:39.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.068][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:39.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:39.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:39.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:39.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.085][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:39.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:39.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.099][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.101][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.104][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.107][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.110][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:39.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:39.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.112][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:39.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:39.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.115][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:39.116][private$selectFields]
biodb.TRACE[2023-04-15 08:03:39.116][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:39.117][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:39.118][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:39.118][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:39.119][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:39.120][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.120][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.121][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.122][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.122][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.123][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.124][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.124][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.125][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.126][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.126][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.127][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.128][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.128][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.129][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.130][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.130][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.131][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.132][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.133][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.133][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.134][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.134][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:39.135][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:39.136][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.136][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.137][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:39.138][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:39.138][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.139][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.140][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.140][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.141][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.142][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.142][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:39.143][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:39.144][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.144][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.145][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.146][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.146][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.147][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.148][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.148][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.149][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.149][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.150][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:39.151][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:39.151][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.152][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.153][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.154][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.154][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.155][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.156][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.156][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.157][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.157][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.158][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.159][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.159][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.160][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.161][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:39.161][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:39.162][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.163][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.163][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:39.164][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:39.165][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.166][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.166][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.167][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.168][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.168][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.169][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.170][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.170][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.171][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.172][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.172][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.173][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.174][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.174][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.175][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.176][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.176][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.177][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.178][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.178][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.179][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.180][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:39.180][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:39.181][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.182][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.182][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:39.183][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:39.184][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.184][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.185][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.186][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.187][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.187][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.188][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:39.189][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:39.189][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.190][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.191][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.192][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.192][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.193][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.194][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.194][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.195][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.196][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.196][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:39.197][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:39.198][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.198][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.199][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.200][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.201][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.201][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.202][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.203][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.203][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.204][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.204][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.205][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.206][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.207][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.207][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:39.208][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:39.209][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.209][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.210][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2023-04-15 08:03:39.211][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2023-04-15 08:03:39.211][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:39.212][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:39.213][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.213][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.214][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.215][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.215][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.216][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.217][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.217][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.218][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.219][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.220][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.220][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.221][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.222][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.222][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.223][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.224][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.224][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.225][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.226][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.226][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.227][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.228][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:39.228][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:39.229][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.230][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.230][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:39.231][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:39.232][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.232][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.233][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.234][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.234][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.235][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.236][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.237][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.237][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.238][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.238][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.239][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.240][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.240][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.241][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:39.242][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:39.243][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.243][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.244][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.245][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.245][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.246][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.247][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.247][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.248][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.249][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.249][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.250][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.251][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.251][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.252][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:03:39.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:39.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:39.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:39.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:39.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:39.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:39.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.262][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.311][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:39.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:39.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.313][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:39.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:39.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.316][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:39.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:39.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:39.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:39.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:39.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:39.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:39.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:39.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.352][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:39.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:39.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.355][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:39.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:39.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.358][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:39.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:39.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.366][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.369][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.372][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.374][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.380][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.383][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.390][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167513889, (1R)-1-deuterio-1-[3-(difluoromethyl)-2-fluoro-phenyl]ethanamine;hydrochloride, (1R)-1-deuterio-1-[3-(difluoromethyl)-2-fluorophenyl]ethanamine;hydrochloride, (1R)-1-deuterio-1-[3-(difluoromethyl)-2-fluorophenyl]ethanamine;hydrochloride, (1R)-1-[3-[bis(fluoranyl)methyl]-2-fluoranyl-phenyl]-1-deuterio-ethanamine;hydrochloride, ...].
biodb.DEBUG[2023-04-15 08:03:39.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:39.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:39.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:39.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:39.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:39.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:39.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:39.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:39.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:39.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:39.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:39.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.432][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:39.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:39.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.435][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:39.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:39.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:39.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:39.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:39.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:39.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.449][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:39.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:39.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.452][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:39.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:39.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.466][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:39.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:39.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:39.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:39.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.477][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.480][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.482][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.485][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.488][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:39.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:39.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.491][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:39.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:39.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.499][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:39.499][private$selectFields]
biodb.TRACE[2023-04-15 08:03:39.500][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-04-15 08:03:39.501][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-04-15 08:03:39.502][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:39.502][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:39.503][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:39.504][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.504][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.505][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.506][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.507][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.507][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.508][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.509][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.509][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.510][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.511][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.511][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.512][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.513][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.513][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.514][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.515][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.515][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.516][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.517][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.517][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.518][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.519][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:39.519][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:39.520][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.521][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.521][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:39.522][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:39.523][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.523][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.524][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.525][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.525][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.526][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.527][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:39.527][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:39.528][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.529][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.529][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.530][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.531][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.531][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.532][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.533][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.533][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.534][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.535][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:39.535][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:39.536][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.536][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.537][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.538][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.538][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.539][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.540][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.541][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.541][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.542][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.542][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.543][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.544][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.544][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.545][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:39.546][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:39.546][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.547][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.548][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:39.549][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:39.549][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.550][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.550][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.551][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.552][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.553][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.553][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.554][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.555][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.555][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.556][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.557][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.557][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.558][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.559][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.559][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.560][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.561][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.561][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.562][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.563][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.563][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.564][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:39.565][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:39.565][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.566][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.567][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:39.567][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:39.568][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.569][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.569][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.570][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.571][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.571][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.572][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:39.573][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:39.574][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.574][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.575][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.576][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.576][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.577][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.578][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.578][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.579][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.580][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.580][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:39.581][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:39.582][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.582][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.583][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.584][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.585][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.585][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.586][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.587][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.588][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.588][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.589][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.590][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.591][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.591][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.592][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2023-04-15 08:03:39.593][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2023-04-15 08:03:39.594][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.594][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.595][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:39.596][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2023-04-15 08:03:39.597][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:39.598][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:39.598][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.599][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.600][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.601][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.601][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.602][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.603][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.604][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.605][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.605][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.606][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.607][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.608][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.608][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.609][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.610][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.611][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.611][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.612][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.613][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.614][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.615][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.615][ef$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:39.616][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:39.617][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.618][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.618][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:39.619][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:39.620][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.621][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.621][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.622][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.623][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.624][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.624][ef$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:39.625][ef$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:39.626][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.627][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.627][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.628][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.629][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.630][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.630][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.631][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.632][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.633][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.633][ef$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:39.634][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:39.635][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.635][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.636][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.637][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.638][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.639][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.639][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.640][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.641][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.642][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.642][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.643][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.644][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.645][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.645][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2023-04-15 08:03:39.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:39.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:39.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:39.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:39.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:39.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:39.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.655][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2023-04-15 08:03:39.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.663][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.669][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2023-04-15 08:03:39.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2023-04-15 08:03:39.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2023-04-15 08:03:39.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2023-04-15 08:03:39.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.698][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:39.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:39.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.701][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:39.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:39.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.709][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-04-15 08:03:39.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-04-15 08:03:39.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:39.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:39.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:39.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:39.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.717][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-04-15 08:03:39.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-04-15 08:03:39.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-04-15 08:03:39.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.729][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:39.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:39.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.732][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:39.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:39.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.734][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2023-04-15 08:03:39.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2023-04-15 08:03:39.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-04-15 08:03:39.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-04-15 08:03:39.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.754][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:39.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:39.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.756][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:39.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:39.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.759][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-04-15 08:03:39.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-04-15 08:03:39.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.764][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.767][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:39.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.770][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.773][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.776][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2023-04-15 08:03:39.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.779][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.781][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.784][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2023-04-15 08:03:39.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.792][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [167510581, 9-hydroxy-9H-fluorene-3-carboxylic acid, 9-hydroxy-9H-fluorene-3-carboxylic acid, 9-hydroxy-9H-fluorene-3-carboxylic acid, 9-oxidanyl-9H-fluorene-3-carboxylic acid, ...].
biodb.DEBUG[2023-04-15 08:03:39.793][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-04-15 08:03:39.793][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-04-15 08:03:39.797][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-04-15 08:03:39.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-04-15 08:03:39.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:39.800][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-04-15 08:03:39.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-04-15 08:03:39.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:39.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-15 08:03:39.803][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-04-15 08:03:39.804][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.comp from the request scheduler
biodb.INFO [2023-04-15 08:03:39.805][self$deleteConn] Connector "ncbi.pubchem.comp" deleted.
biodb.DEBUG[2023-04-15 08:03:39.806][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-04-15 08:03:39.806][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:39.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:39.807][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:39.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:39.809][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:39.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-04-15 08:03:39.812][biodb::testContext]
biodb.INFO [2023-04-15 08:03:39.813][biodb::testContext] ********************************************************************************
biodb.INFO [2023-04-15 08:03:39.814][biodb::testContext] Test context - Pubchem Subst long tests
biodb.INFO [2023-04-15 08:03:39.814][biodb::testContext] ********************************************************************************
biodb.INFO [2023-04-15 08:03:39.815][biodb::testContext]
biodb.INFO [2023-04-15 08:03:39.817][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.6.1.
biodb.DEBUG[2023-04-15 08:03:39.818][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.2/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2023-04-15 08:03:39.821][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-15 08:03:39.822][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-04-15 08:03:39.822][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-04-15 08:03:39.823][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:39.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:39.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:39.825][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-04-15 08:03:39.826][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-04-15 08:03:39.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:39.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:39.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:39.829][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-04-15 08:03:39.829][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-04-15 08:03:39.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:39.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:39.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:39.832][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-04-15 08:03:39.833][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-04-15 08:03:39.834][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-04-15 08:03:39.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:39.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:39.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:39.836][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-04-15 08:03:39.837][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-04-15 08:03:39.838][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-04-15 08:03:39.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:39.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:39.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:39.840][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-04-15 08:03:39.841][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-04-15 08:03:39.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:39.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:39.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:39.844][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-04-15 08:03:39.844][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-04-15 08:03:39.845][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-04-15 08:03:39.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:39.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:39.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:39.848][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-04-15 08:03:39.848][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-04-15 08:03:39.849][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:39.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:39.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:39.851][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-04-15 08:03:39.852][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-04-15 08:03:39.853][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-04-15 08:03:39.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:39.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:39.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:39.855][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-04-15 08:03:39.856][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-04-15 08:03:39.857][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-04-15 08:03:39.857][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-04-15 08:03:39.858][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-04-15 08:03:39.859][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-04-15 08:03:39.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:39.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:39.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:39.861][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-04-15 08:03:39.862][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-04-15 08:03:39.863][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:39.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:39.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:39.865][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-04-15 08:03:39.865][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-04-15 08:03:39.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:39.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:39.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:39.868][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-04-15 08:03:39.869][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-04-15 08:03:39.869][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:39.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:39.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:39.871][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-04-15 08:03:39.872][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-04-15 08:03:39.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:39.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:39.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:39.875][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-04-15 08:03:39.875][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-04-15 08:03:39.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:39.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:39.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:39.878][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-04-15 08:03:39.879][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-04-15 08:03:39.892][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-04-15 08:03:39.893][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:39.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:39.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:39.895][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-04-15 08:03:39.896][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-04-15 08:03:39.897][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-04-15 08:03:39.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:39.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:39.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:39.900][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-04-15 08:03:39.901][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:39.902][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-04-15 08:03:39.902][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:39.903][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:03:39.904][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:39.904][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:03:39.905][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:39.906][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:03:39.907][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-04-15 08:03:39.907][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:03:39.908][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:39.909][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-04-15 08:03:39.909][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:03:39.910][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:39.911][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:39.911][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:03:39.911][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-15 08:03:39.911][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-15 08:03:39.911][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-04-15 08:03:39.911][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-04-15 08:03:39.912][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:03:39.913][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:39.913][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:39.914][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:03:39.915][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:39.915][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:39.916][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:03:39.917][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:39.917][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:03:39.918][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:03:39.919][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:39.919][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:39.920][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-04-15 08:03:39.927][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:39.928][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-04-15 08:03:39.929][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:39.930][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:03:39.930][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:39.931][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:03:39.932][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:39.932][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:03:39.933][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-04-15 08:03:39.934][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:03:39.934][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:39.935][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-04-15 08:03:39.936][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:03:39.936][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:39.937][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:39.938][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:03:39.938][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-15 08:03:39.938][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-15 08:03:39.938][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-04-15 08:03:39.938][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-04-15 08:03:39.939][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:03:39.939][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:39.940][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:39.940][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:03:39.941][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:39.942][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:39.942][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:03:39.943][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:39.944][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:03:39.944][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:03:39.945][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:39.946][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:39.946][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-04-15 08:03:39.948][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:39.948][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-04-15 08:03:39.949][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:39.950][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:03:39.950][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:39.951][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:03:39.952][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:39.953][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:03:39.953][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-04-15 08:03:39.954][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:03:39.955][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:39.955][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-04-15 08:03:39.956][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:03:39.957][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:39.957][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:39.958][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:39.958][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:03:39.959][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:39.960][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:39.960][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:03:39.961][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:39.962][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:39.962][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:03:39.963][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:39.964][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:03:39.964][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:03:39.965][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:39.966][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:39.966][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-04-15 08:03:39.968][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:39.968][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-04-15 08:03:39.969][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:39.970][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:03:39.970][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:39.971][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:03:39.972][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:39.972][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:03:39.973][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-04-15 08:03:39.974][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:03:39.975][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:39.975][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-04-15 08:03:39.976][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:03:39.977][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:39.977][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:39.978][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:39.979][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-04-15 08:03:39.979][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:39.980][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:39.980][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:03:39.981][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:39.982][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:39.982][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:03:39.983][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:39.984][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:03:39.984][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:03:39.985][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:39.986][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:39.987][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-15 08:03:39.987][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:39.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:39.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:39.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:39.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:39.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:39.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:39.991][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:39.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:39.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:39.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:39.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:39.995][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:39.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:39.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:39.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:39.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:39.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:39.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:39.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.001][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.004][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.007][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.010][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.016][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.019][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.026][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.032][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.035][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.041][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-04-15 08:03:40.042][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-04-15 08:03:40.043][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-04-15 08:03:40.044][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-04-15 08:03:40.045][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-04-15 08:03:40.046][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-04-15 08:03:40.047][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-04-15 08:03:40.048][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-04-15 08:03:40.049][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-04-15 08:03:40.050][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-04-15 08:03:40.051][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-04-15 08:03:40.052][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-04-15 08:03:40.053][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-04-15 08:03:40.054][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-04-15 08:03:40.055][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-04-15 08:03:40.056][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-04-15 08:03:40.057][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-04-15 08:03:40.058][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-04-15 08:03:40.059][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-04-15 08:03:40.060][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-04-15 08:03:40.061][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-04-15 08:03:40.062][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-04-15 08:03:40.063][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-04-15 08:03:40.064][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-04-15 08:03:40.065][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-04-15 08:03:40.066][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-04-15 08:03:40.067][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-04-15 08:03:40.068][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-04-15 08:03:40.069][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-04-15 08:03:40.070][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-04-15 08:03:40.071][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-04-15 08:03:40.072][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-04-15 08:03:40.073][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-04-15 08:03:40.073][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-04-15 08:03:40.074][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-04-15 08:03:40.075][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-04-15 08:03:40.076][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-04-15 08:03:40.077][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-04-15 08:03:40.078][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-04-15 08:03:40.079][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-04-15 08:03:40.080][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-04-15 08:03:40.081][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-04-15 08:03:40.082][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-04-15 08:03:40.083][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-04-15 08:03:40.084][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-04-15 08:03:40.085][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-04-15 08:03:40.086][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-04-15 08:03:40.087][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-04-15 08:03:40.088][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-04-15 08:03:40.089][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-04-15 08:03:40.090][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-04-15 08:03:40.091][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-04-15 08:03:40.092][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-04-15 08:03:40.093][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-04-15 08:03:40.093][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-04-15 08:03:40.094][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-04-15 08:03:40.095][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-04-15 08:03:40.096][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-04-15 08:03:40.097][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-04-15 08:03:40.098][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-04-15 08:03:40.099][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-04-15 08:03:40.100][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-04-15 08:03:40.101][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-04-15 08:03:40.102][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-04-15 08:03:40.103][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-04-15 08:03:40.104][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-04-15 08:03:40.105][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-04-15 08:03:40.106][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-04-15 08:03:40.107][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-04-15 08:03:40.108][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-04-15 08:03:40.109][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-04-15 08:03:40.110][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-04-15 08:03:40.111][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-04-15 08:03:40.112][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-04-15 08:03:40.113][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-04-15 08:03:40.114][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-04-15 08:03:40.115][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-04-15 08:03:40.116][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-04-15 08:03:40.117][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-04-15 08:03:40.118][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-04-15 08:03:40.125][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-04-15 08:03:40.126][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-04-15 08:03:40.127][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-04-15 08:03:40.128][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-04-15 08:03:40.129][initialize] This is biodb version 1.6.1.
biodb.DEBUG[2023-04-15 08:03:40.130][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-04-15 08:03:40.131][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.132][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.133][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:40.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:40.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.137][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:40.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:40.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.142][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:40.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:40.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.146][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:40.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:40.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.150][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:40.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:40.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.154][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:40.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:40.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.158][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:40.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:40.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.163][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:40.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:40.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:40.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:40.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.171][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:40.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:40.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.175][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:40.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:40.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.180][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:40.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:40.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:40.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:40.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.188][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:40.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:40.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.192][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:40.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:40.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.197][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:40.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:40.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-04-15 08:03:40.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:40.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:40.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-04-15 08:03:40.206][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2023-04-15 08:03:40.207][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2023-04-15 08:03:40.209][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:40.209][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2023-04-15 08:03:40.210][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:40.211][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:03:40.211][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:40.212][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:03:40.213][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:40.214][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:03:40.214][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2023-04-15 08:03:40.215][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:03:40.216][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:40.216][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2023-04-15 08:03:40.217][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:03:40.218][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2023-04-15 08:03:40.218][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2023-04-15 08:03:40.219][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:40.219][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:40.220][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-04-15 08:03:40.221][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:40.221][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:40.222][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:03:40.223][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:40.223][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:40.224][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:03:40.225][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2023-04-15 08:03:40.225][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2023-04-15 08:03:40.225][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:03:40.226][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:03:40.227][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:40.227][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:40.228][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2023-04-15 08:03:40.230][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:40.230][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2023-04-15 08:03:40.231][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:40.232][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:03:40.232][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:40.233][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:03:40.234][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:40.234][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:03:40.235][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-15 08:03:40.236][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:03:40.236][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:40.237][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2023-04-15 08:03:40.238][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:03:40.239][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2023-04-15 08:03:40.239][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2023-04-15 08:03:40.239][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2023-04-15 08:03:40.239][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2023-04-15 08:03:40.239][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2023-04-15 08:03:40.239][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2023-04-15 08:03:40.239][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:40.240][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:03:40.241][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-04-15 08:03:40.242][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:40.242][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:40.243][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:03:40.244][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:40.244][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:40.245][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:03:40.246][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:03:40.246][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-04-15 08:03:40.246][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:03:40.247][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:03:40.247][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:40.248][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:40.249][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2023-04-15 08:03:40.250][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:40.251][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2023-04-15 08:03:40.252][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:40.252][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:03:40.253][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:40.254][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:03:40.254][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:40.255][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:03:40.256][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-15 08:03:40.257][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:03:40.257][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:40.258][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2023-04-15 08:03:40.259][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:03:40.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2023-04-15 08:03:40.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:03:40.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:03:40.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:03:40.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:03:40.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:03:40.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:03:40.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:03:40.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:03:40.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:03:40.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2023-04-15 08:03:40.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:03:40.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:03:40.259][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2023-04-15 08:03:40.260][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:40.261][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-04-15 08:03:40.261][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-04-15 08:03:40.261][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-04-15 08:03:40.262][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2023-04-15 08:03:40.262][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:40.263][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:40.264][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:03:40.264][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:40.265][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:40.266][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:03:40.266][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:03:40.266][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-04-15 08:03:40.266][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2023-04-15 08:03:40.267][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:03:40.268][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:03:40.268][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:40.269][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-04-15 08:03:40.270][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2023-04-15 08:03:40.271][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:40.272][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2023-04-15 08:03:40.273][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:40.273][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-04-15 08:03:40.274][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:40.275][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-04-15 08:03:40.275][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:40.276][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-04-15 08:03:40.277][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-04-15 08:03:40.278][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-04-15 08:03:40.278][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:40.279][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2023-04-15 08:03:40.280][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-04-15 08:03:40.280][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2023-04-15 08:03:40.280][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2023-04-15 08:03:40.281][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-04-15 08:03:40.282][self$setPropertyValue]
biodb.DEBUG[2023-04-15 08:03:40.282][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2023-04-15 08:03:40.283][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:40.284][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:40.284][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-04-15 08:03:40.285][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-04-15 08:03:40.286][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-04-15 08:03:40.286][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-04-15 08:03:40.287][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:03:40.287][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2023-04-15 08:03:40.287][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2023-04-15 08:03:40.288][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-04-15 08:03:40.288][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-04-15 08:03:40.289][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-04-15 08:03:40.290][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-04-15 08:03:40.291][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2023-04-15 08:03:40.292][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-04-15 08:03:40.293][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-04-15 08:03:40.294][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2023-04-15 08:03:40.295][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-04-15 08:03:40.296][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2023-04-15 08:03:40.300][super$initialize] Initialize connector ncbi.pubchem.subst.
biodb.DEBUG[2023-04-15 08:03:40.301][super$initialize] Register connector ncbi.pubchem.subst with the request scheduler
biodb.DEBUG[2023-04-15 08:03:40.301][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.subst.
biodb.DEBUG[2023-04-15 08:03:40.302][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2023-04-15 08:03:40.303][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2023-04-15 08:03:40.304][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2023-04-15 08:03:40.305][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2023-04-15 08:03:40.306][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2023-04-15 08:03:40.306][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2023-04-15 08:03:40.307][rule$addConnector] Connector "ncbi.pubchem.subst" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2023-04-15 08:03:40.327][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.subst for database class ncbi.pubchem.subst .
biodb.INFO [2023-04-15 08:03:40.329][biodb::testThat]
biodb.INFO [2023-04-15 08:03:40.330][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2023-04-15 08:03:40.331][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:03:40.331][biodb::testThat]
biodb.TRACE[2023-04-15 08:03:40.333][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.subst-3-content.xml".
biodb.DEBUG[2023-04-15 08:03:40.334][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:03:40.337][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2023-04-15 08:03:40.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:40.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:40.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:40.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:40.347][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.347][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.348][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.349][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.353][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:40.353][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:40.354][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.355][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:40.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:40.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.359][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:03:40.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:03:40.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:03:40.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:03:40.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:03:40.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:03:40.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:40.407][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3.
biodb.TRACE[2023-04-15 08:03:40.408][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:03:40.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:03:40.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.411][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:03:40.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:03:40.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:03:40.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:03:40.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.417][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:03:40.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:03:40.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.419][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:03:40.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:03:40.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.422][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:03:40.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:03:40.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.425][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:03:40.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:03:40.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:03:40.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:03:40.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:03:40.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:03:40.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.461][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:03:40.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:03:40.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:03:40.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:03:40.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.479][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.479][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.480][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.481][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.489][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:40.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:40.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.492][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:40.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:40.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:40.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:40.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.497][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:40.498][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:40.498][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.499][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:40.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:40.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.507][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.508][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.509][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.509][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.518][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:40.519][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:40.520][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.520][ef$get] fields variable is a list.
biodb.INFO [2023-04-15 08:03:40.524][biodb::testThat]
biodb.INFO [2023-04-15 08:03:40.525][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2023-04-15 08:03:40.526][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:03:40.526][biodb::testThat]
biodb.DEBUG[2023-04-15 08:03:40.528][private$loadEntries] Creating entries from ids [1]: "3".
biodb.DEBUG[2023-04-15 08:03:40.529][conn$getEntryContent] Get PubChem Substance entry content(s) for 1 id(s)...
biodb.TRACE[2023-04-15 08:03:40.530][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3".
biodb.INFO [2023-04-15 08:03:40.531][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75" for "ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75".
biodb.TRACE[2023-04-15 08:03:40.532][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2023-04-15 08:03:40.533][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2023-04-15 08:03:40.534][conn$getEntryContent] 0 PubChem Substance entry content(s) loaded from cache.
biodb.DEBUG[2023-04-15 08:03:40.534][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Substance database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2023-04-15 08:03:40.535][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2023-04-15 08:03:40.536][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2023-04-15 08:03:40.536][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2023-04-15 08:03:40.538][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/substance/sid/3/XML".
biodb.DEBUG[2023-04-15 08:03:40.539][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2023-04-15 08:03:40.540][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2023-04-15 08:03:40.541][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/substance/sid/3/XML".
biodb.TRACE[2023-04-15 08:03:40.658][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/substance/sid/3/XML).
biodb.TRACE[2023-04-15 08:03:40.781][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75/3.xml"
biodb.DEBUG[2023-04-15 08:03:40.782][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2023-04-15 08:03:40.783][self$createEntryFromContent] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2023-04-15 08:03:40.784][self$createEntryFromContent] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2023-04-15 08:03:40.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-04-15 08:03:40.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:40.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:40.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:40.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:40.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:40.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-04-15 08:03:40.794][ef$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.795][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.796][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.796][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.800][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:40.801][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:40.801][ef$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.802][ef$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:40.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2023-04-15 08:03:40.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:03:40.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:03:40.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:03:40.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:03:40.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.814][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:03:40.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2023-04-15 08:03:40.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-04-15 08:03:40.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-04-15 08:03:40.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-04-15 08:03:40.834][self$createEntryFromContent] Accession numbers: 3.
biodb.TRACE[2023-04-15 08:03:40.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-04-15 08:03:40.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-04-15 08:03:40.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:03:40.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-04-15 08:03:40.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:03:40.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-04-15 08:03:40.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-15 08:03:40.846][biodb::testThat]
biodb.INFO [2023-04-15 08:03:40.847][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2023-04-15 08:03:40.848][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:03:40.848][biodb::testThat]
biodb.INFO [2023-04-15 08:03:40.851][biodb::testThat]
biodb.INFO [2023-04-15 08:03:40.852][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2023-04-15 08:03:40.852][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:03:40.853][biodb::testThat]
biodb.WARN [2023-04-15 08:03:40.857][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2023-04-15 08:03:40.861][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2023-04-15 08:03:40.866][biodb::testThat]
biodb.INFO [2023-04-15 08:03:40.867][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2023-04-15 08:03:40.868][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:03:40.868][biodb::testThat]
biodb.TRACE[2023-04-15 08:03:40.875][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:03:40.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:03:40.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.878][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:03:40.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:03:40.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.881][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:03:40.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:03:40.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.884][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:03:40.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:03:40.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.886][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:03:40.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:03:40.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.889][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:03:40.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:03:40.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.892][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:03:40.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:03:40.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.896][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:03:40.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:03:40.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.899][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2023-04-15 08:03:40.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2023-04-15 08:03:40.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.902][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:03:40.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2023-04-15 08:03:40.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.905][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:03:40.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:03:40.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.908][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-04-15 08:03:40.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-04-15 08:03:40.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.911][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-04-15 08:03:40.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-04-15 08:03:40.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-04-15 08:03:40.914][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-04-15 08:03:40.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-04-15 08:03:40.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-04-15 08:03:40.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-04-15 08:03:40.918][biodb::testThat]
biodb.INFO [2023-04-15 08:03:40.919][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2023-04-15 08:03:40.920][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:03:40.920][biodb::testThat]
biodb.INFO [2023-04-15 08:03:40.924][biodb::testThat]
biodb.INFO [2023-04-15 08:03:40.925][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2023-04-15 08:03:40.925][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:03:40.926][biodb::testThat]
biodb.INFO [2023-04-15 08:03:40.930][biodb::testThat]
biodb.INFO [2023-04-15 08:03:40.930][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2023-04-15 08:03:40.931][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:03:40.932][biodb::testThat]
biodb.DEBUG[2023-04-15 08:03:40.934][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/substance/3".
biodb.DEBUG[2023-04-15 08:03:41.035][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/substance/3.
biodb.INFO [2023-04-15 08:03:41.203][biodb::testThat]
biodb.INFO [2023-04-15 08:03:41.204][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2023-04-15 08:03:41.205][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-04-15 08:03:41.206][biodb::testThat]
biodb.DEBUG[2023-04-15 08:03:41.319][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=3&t=l.
biodb.INFO [2023-04-15 08:03:41.424][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-04-15 08:03:41.425][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.subst from the request scheduler
biodb.INFO [2023-04-15 08:03:41.426][self$deleteConn] Connector "ncbi.pubchem.subst" deleted.
biodb.DEBUG[2023-04-15 08:03:41.427][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-04-15 08:03:41.427][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-04-15 08:03:41.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-04-15 08:03:41.428][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-04-15 08:03:41.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-04-15 08:03:41.430][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-04-15 08:03:41.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1039 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1039 ]
> 
> proc.time()
   user  system elapsed 
 36.274   1.309  83.922

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbNcbi/DESCRIPTION’ ... OK
* this is package ‘biodbNcbi’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbNcbi’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.1Mb
  sub-directories of 1Mb or more:
    testref   7.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... WARNING
'library' or 'require' call not declared from: ‘biodbNci’
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.16-bioc-longtests/meat/biodbNcbi.Rcheck/00check.log’
for details.

Installation output

biodbNcbi.Rcheck/00install.out

* installing *source* package ‘biodbNcbi’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbNcbi)