Pierrick Roger
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/biodbHmdb |
| git_branch: master |
| git_last_commit: 7e6326a |
| git_last_commit_date: 2022-03-17 08:20:39 -0400 (Thu, 17 Mar 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:02 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the biodbHmdb package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 175/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbHmdb 1.1.2 (landing page) Pierrick Roger
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: biodbHmdb |
| Version: 1.1.2 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings biodbHmdb_1.1.2.tar.gz |
| StartedAt: 2022-03-17 18:33:21 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 18:34:39 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 77.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbHmdb.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings biodbHmdb_1.1.2.tar.gz ### ############################################################################## ############################################################################## * using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/biodbHmdb.Rcheck' * using R Under development (unstable) (2021-11-21 r81221) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'biodbHmdb/DESCRIPTION' ... OK * this is package 'biodbHmdb' version '1.1.2' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'biodbHmdb' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files for x64 is not available File 'D:/biocbuild/bbs-3.15-bioc/R/library/biodbHmdb/libs/x64/biodbHmdb.dll': Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Found 'exit', possibly from 'exit' (C), 'stop' (Fortran) Found 'printf', possibly from 'printf' (C) Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs. The detected symbols are linked into the code but might come from libraries and not actually be called. See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'D:/biocbuild/bbs-3.15-bioc/meat/biodbHmdb.Rcheck/00check.log' for details.
biodbHmdb.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################
* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'biodbHmdb' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/testthat/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/testthat/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c Tag.cpp -o Tag.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/testthat/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c extractXmlEntries.cpp -o extractXmlEntries.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/testthat/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c test-100-tag.cpp -o test-100-tag.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/testthat/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c test-runner.cpp -o test-runner.o
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/testthat/include/testthat.h:1,
from test-runner.cpp:7:
D:/biocbuild/bbs-3.15-bioc/R/library/testthat/include/testthat/testthat.h: In function 'std::ostream& Catch::cout()':
D:/biocbuild/bbs-3.15-bioc/R/library/testthat/include/testthat/testthat.h:145:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
}
^
D:/biocbuild/bbs-3.15-bioc/R/library/testthat/include/testthat/testthat.h: In function 'std::ostream& Catch::cerr()':
D:/biocbuild/bbs-3.15-bioc/R/library/testthat/include/testthat/testthat.h:152:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
}
^
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o biodbHmdb.dll tmp.def RcppExports.o Tag.o extractXmlEntries.o test-100-tag.o test-runner.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'biodbHmdb'
finding HTML links ... done
HmdbMetabolitesConn html
finding level-2 HTML links ... done
HmdbMetabolitesEntry html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'seqbias' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'TransView' is missing or broken
done
biodbHmdb.Rcheck/tests/testthat.Rout
R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2022-03-17 18:34:18.752][biodb::testContext]
biodb.INFO [2022-03-17 18:34:18.752][biodb::testContext] ********************************************************************************
biodb.INFO [2022-03-17 18:34:18.752][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2022-03-17 18:34:18.752][biodb::testContext] ********************************************************************************
biodb.INFO [2022-03-17 18:34:18.752][biodb::testContext]
biodb.INFO [2022-03-17 18:34:18.752][biodb::testThat]
biodb.INFO [2022-03-17 18:34:18.752][biodb::testThat] Running test function test_extractXmlEntries (" extractXmlEntries() works fine. ").
biodb.INFO [2022-03-17 18:34:18.752][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:18.767][biodb::testThat]
biodb.INFO [2022-03-17 18:34:18.861][biodb::testContext]
biodb.INFO [2022-03-17 18:34:18.861][biodb::testContext] ********************************************************************************
biodb.INFO [2022-03-17 18:34:18.861][biodb::testContext] Test context - Generic tests
biodb.INFO [2022-03-17 18:34:18.877][biodb::testContext] ********************************************************************************
biodb.INFO [2022-03-17 18:34:18.877][biodb::testContext]
biodb.INFO [2022-03-17 18:34:18.892][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.3.2.
biodb.DEBUG[2022-03-17 18:34:18.892][self$loadDefinitions] Load definitions from file "D:/biocbuild/bbs-3.15-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-03-17 18:34:18.892][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-03-17 18:34:18.892][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-03-17 18:34:18.892][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-03-17 18:34:18.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:18.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:18.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:18.908][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-03-17 18:34:18.908][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-03-17 18:34:18.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:18.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:18.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:18.924][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-03-17 18:34:18.924][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-03-17 18:34:18.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:18.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:18.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:18.924][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-03-17 18:34:18.924][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-03-17 18:34:18.924][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-03-17 18:34:18.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:18.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:18.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:18.924][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-03-17 18:34:18.924][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-03-17 18:34:18.924][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-03-17 18:34:18.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:18.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:18.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:18.939][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-03-17 18:34:18.939][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-03-17 18:34:18.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:18.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:18.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:18.939][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-03-17 18:34:18.939][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-03-17 18:34:18.939][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-03-17 18:34:18.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:18.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:18.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:18.939][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-03-17 18:34:18.939][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-03-17 18:34:18.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:18.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:18.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:18.939][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-03-17 18:34:18.939][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-03-17 18:34:18.939][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-03-17 18:34:18.955][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:18.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:18.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:18.955][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-03-17 18:34:18.955][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-03-17 18:34:18.955][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-03-17 18:34:18.955][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-03-17 18:34:18.955][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-03-17 18:34:18.955][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-03-17 18:34:18.955][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:18.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:18.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:18.955][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-03-17 18:34:18.955][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-03-17 18:34:18.955][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:18.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:18.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:18.955][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-03-17 18:34:18.955][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-03-17 18:34:18.955][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:18.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:18.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:18.971][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-03-17 18:34:18.971][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-03-17 18:34:18.971][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:18.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:18.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:18.971][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-03-17 18:34:18.971][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-03-17 18:34:18.971][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:18.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:18.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:18.971][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-03-17 18:34:18.971][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-03-17 18:34:18.971][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:18.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:18.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:18.971][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-03-17 18:34:18.971][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-03-17 18:34:18.986][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-03-17 18:34:18.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:18.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:18.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:18.986][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-03-17 18:34:18.986][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-03-17 18:34:18.986][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-03-17 18:34:18.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:18.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:18.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:18.986][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-03-17 18:34:19.017][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:19.033][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-03-17 18:34:19.033][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:19.033][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:34:19.033][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:19.033][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:34:19.033][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:19.033][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:34:19.033][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-03-17 18:34:19.033][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:34:19.033][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:19.049][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-03-17 18:34:19.049][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:34:19.049][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:19.049][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:19.049][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-03-17 18:34:19.049][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-03-17 18:34:19.049][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-03-17 18:34:19.049][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-03-17 18:34:19.049][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-03-17 18:34:19.049][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:34:19.049][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:19.049][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:19.049][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:34:19.049][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:19.049][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:19.049][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:34:19.049][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:19.049][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:19.049][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:19.049][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:19.049][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:19.049][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-03-17 18:34:19.064][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:19.064][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-03-17 18:34:19.064][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:19.064][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:34:19.064][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:19.064][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:34:19.064][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:19.064][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:34:19.064][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-03-17 18:34:19.064][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:34:19.064][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:19.064][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-03-17 18:34:19.064][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:34:19.064][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:19.064][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:19.064][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-03-17 18:34:19.064][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-03-17 18:34:19.064][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-03-17 18:34:19.064][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-03-17 18:34:19.064][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-03-17 18:34:19.064][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:34:19.064][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:19.080][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:19.080][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:34:19.080][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:19.080][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:19.080][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:34:19.080][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:19.080][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:19.080][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:19.080][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:19.080][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:19.080][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-03-17 18:34:19.080][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:19.080][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-03-17 18:34:19.096][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:19.096][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:34:19.096][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:19.096][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:34:19.096][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:19.096][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:34:19.096][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-03-17 18:34:19.096][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:34:19.096][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:19.096][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-03-17 18:34:19.096][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:34:19.096][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:19.096][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:19.111][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:19.111][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:34:19.111][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:19.111][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:19.111][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:34:19.111][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:19.111][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:19.111][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:34:19.111][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:19.111][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:19.111][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:19.111][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:19.111][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:19.127][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-03-17 18:34:19.127][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:19.127][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-03-17 18:34:19.127][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:19.127][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:34:19.127][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:19.127][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:34:19.127][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:19.127][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:34:19.127][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-03-17 18:34:19.127][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:34:19.127][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:19.142][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-03-17 18:34:19.142][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:34:19.142][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:19.142][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:19.142][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:19.142][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:34:19.142][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:19.142][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:19.142][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:34:19.142][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:19.142][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:19.142][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:34:19.142][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:19.142][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:19.158][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:19.158][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:19.158][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:19.158][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-03-17 18:34:19.158][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.158][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.189][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.189][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.189][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.205][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.205][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.252][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.252][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.267][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.267][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-03-17 18:34:19.267][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-03-17 18:34:19.267][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-03-17 18:34:19.267][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-03-17 18:34:19.267][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-03-17 18:34:19.267][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-03-17 18:34:19.267][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-03-17 18:34:19.283][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-03-17 18:34:19.283][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-03-17 18:34:19.283][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-03-17 18:34:19.283][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-03-17 18:34:19.283][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-03-17 18:34:19.283][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-03-17 18:34:19.283][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-03-17 18:34:19.283][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-03-17 18:34:19.283][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-03-17 18:34:19.283][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-03-17 18:34:19.283][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-03-17 18:34:19.283][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-03-17 18:34:19.283][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-03-17 18:34:19.299][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-03-17 18:34:19.299][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-03-17 18:34:19.299][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-03-17 18:34:19.299][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-03-17 18:34:19.299][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-03-17 18:34:19.299][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-03-17 18:34:19.299][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-03-17 18:34:19.299][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-03-17 18:34:19.299][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-03-17 18:34:19.299][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-03-17 18:34:19.299][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-03-17 18:34:19.299][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-03-17 18:34:19.299][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-03-17 18:34:19.314][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-03-17 18:34:19.314][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-03-17 18:34:19.314][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-03-17 18:34:19.314][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-03-17 18:34:19.314][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-03-17 18:34:19.314][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-03-17 18:34:19.314][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-03-17 18:34:19.314][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-03-17 18:34:19.314][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-03-17 18:34:19.314][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-03-17 18:34:19.314][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-03-17 18:34:19.314][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-03-17 18:34:19.314][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-03-17 18:34:19.330][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-03-17 18:34:19.330][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-03-17 18:34:19.330][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-03-17 18:34:19.330][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-03-17 18:34:19.330][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-03-17 18:34:19.330][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-03-17 18:34:19.330][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-03-17 18:34:19.330][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-03-17 18:34:19.330][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-03-17 18:34:19.330][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-03-17 18:34:19.330][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-03-17 18:34:19.330][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-03-17 18:34:19.330][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-03-17 18:34:19.346][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-03-17 18:34:19.346][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-03-17 18:34:19.346][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-03-17 18:34:19.346][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-03-17 18:34:19.346][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-03-17 18:34:19.346][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-03-17 18:34:19.346][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-03-17 18:34:19.346][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-03-17 18:34:19.346][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-03-17 18:34:19.346][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-03-17 18:34:19.346][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-03-17 18:34:19.346][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-03-17 18:34:19.346][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-03-17 18:34:19.361][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-03-17 18:34:19.361][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-03-17 18:34:19.361][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-03-17 18:34:19.361][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-03-17 18:34:19.361][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-03-17 18:34:19.361][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-03-17 18:34:19.361][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-03-17 18:34:19.361][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-03-17 18:34:19.361][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-03-17 18:34:19.361][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-03-17 18:34:19.361][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-03-17 18:34:19.377][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-03-17 18:34:19.377][initialize] This is biodb version 1.3.2.
biodb.DEBUG[2022-03-17 18:34:19.377][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-03-17 18:34:19.377][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.377][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:19.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:19.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:19.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:19.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:19.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:19.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.408][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:19.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:19.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.408][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:19.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:19.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.408][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:19.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:19.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:19.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:19.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:19.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:19.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:19.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:19.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:19.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:19.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:19.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:19.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:19.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:19.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:19.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:19.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:19.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:19.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:19.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:19.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:19.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:19.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:19.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:19.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:19.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:19.486][biodb$loadDefinitions] Load definitions from file "D:/biocbuild/bbs-3.15-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2022-03-17 18:34:19.486][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2022-03-17 18:34:19.486][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:19.486][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:19.502][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:19.502][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:34:19.517][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:19.517][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:19.517][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:34:19.517][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2022-03-17 18:34:19.517][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2022-03-17 18:34:19.517][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:19.517][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:19.517][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:19.517][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:19.517][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-03-17 18:34:19.517][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-03-17 18:34:19.517][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-03-17 18:34:19.517][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-03-17 18:34:19.549][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2022-03-17 18:34:19.549][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2022-03-17 18:34:19.549][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2022-03-17 18:34:19.549][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2022-03-17 18:34:19.549][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-03-17 18:34:19.549][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-03-17 18:34:19.564][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2022-03-17 18:34:19.564][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2022-03-17 18:34:19.564][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2022-03-17 18:34:19.564][self$setPropertyValue] Setting property "urls" to "D:/biocbuild/bbs-3.15-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2022-03-17 18:34:19.564][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:19.564][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:19.564][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2022-03-17 18:34:19.564][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2022-03-17 18:34:19.564][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2022-03-17 18:34:19.580][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2022-03-17 18:34:19.580][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-03-17 18:34:19.580][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-03-17 18:34:19.580][private$addConnectorRules] Create new rule for URL "D:/biocbuild/bbs-3.15-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2022-03-17 18:34:19.580][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-03-17 18:34:19.580][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2022-03-17 18:34:19.642][biodb::testThat]
biodb.INFO [2022-03-17 18:34:19.642][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2022-03-17 18:34:19.642][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:19.642][biodb::testThat]
biodb.TRACE[2022-03-17 18:34:19.642][loadFileContents] Loaded 1 files from cache: [1]: "D:/biocbuild/bbs-3.15-bioc/R/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2022-03-17 18:34:19.658][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:19.658][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2022-03-17 18:34:19.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:19.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:19.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:19.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:19.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:19.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:19.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:19.674][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:19.689][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:19.689][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.689][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:19.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:19.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.705][ef$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:19.705][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:19.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.705][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.721][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:19.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:19.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.736][ef$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:19.736][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:19.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.736][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.736][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:19.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:19.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.752][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:19.752][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:19.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.752][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:19.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:19.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.783][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:19.783][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:19.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.783][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:19.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:19.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.799][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:19.799][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:19.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.799][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.799][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:19.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:19.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.814][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:19.814][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:19.814][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.814][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.814][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:19.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:19.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.830][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:19.830][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:19.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.830][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:19.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:19.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.846][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:19.846][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:19.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.846][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:19.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:19.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.861][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:19.861][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:19.861][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.861][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.861][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:19.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:19.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.877][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:19.877][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:19.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.877][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:19.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:19.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.892][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:19.892][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:19.892][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.892][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:19.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:19.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.908][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:19.908][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:19.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.908][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:19.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:19.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.924][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:19.924][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:19.939][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.939][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.939][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:19.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:19.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.939][ef$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:19.955][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:19.955][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.955][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.955][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:19.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:19.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.971][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:19.971][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:19.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.971][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.971][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:19.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:19.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.986][ef$get] Asked field names are: super.class.
biodb.TRACE[2022-03-17 18:34:19.986][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:19.986][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.986][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:19.986][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2022-03-17 18:34:19.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:19.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:19.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.033][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:20.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:20.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.033][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:20.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:20.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.033][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:20.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:20.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.033][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:20.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:20.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.049][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:20.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:20.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.049][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:20.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:20.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:20.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:20.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:20.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:20.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:20.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:20.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:20.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:20.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:20.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:20.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:20.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:20.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:20.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:20.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:20.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:20.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:20.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:20.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:20.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:20.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:20.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:20.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:20.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:20.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:20.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:20.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:20.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:20.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:20.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:20.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.111][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:20.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:20.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.111][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:20.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:20.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.111][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:20.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:20.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.111][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:20.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:20.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:20.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:20.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:20.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:20.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:20.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:20.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:20.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:20.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:20.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:20.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.142][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:20.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:20.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:20.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.221][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-03-17 18:34:20.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.236][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:20.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:20.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:20.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:20.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:20.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:20.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:20.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:20.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:20.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:20.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.267][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:20.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:20.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.267][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:20.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:20.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.283][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:20.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:20.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:20.314][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2022-03-17 18:34:20.314][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-03-17 18:34:20.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-03-17 18:34:20.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.330][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-03-17 18:34:20.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-03-17 18:34:20.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.330][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-03-17 18:34:20.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-03-17 18:34:20.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.330][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-03-17 18:34:20.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-03-17 18:34:20.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.361][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:20.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:20.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.392][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:20.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:20.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.392][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:20.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:20.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.392][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:20.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:20.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.424][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.424][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.424][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.424][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:20.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:20.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:20.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:20.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:20.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:20.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.439][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:20.455][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:20.455][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.455][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:20.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:20.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.455][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:20.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:20.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.455][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:20.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:20.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:20.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:20.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.471][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:20.471][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:20.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.471][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:20.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:20.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:20.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:20.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:20.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:20.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:20.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:20.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.486][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:20.486][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:20.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.502][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:20.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:20.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.502][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:20.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:20.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.502][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:20.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:20.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.517][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:20.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:20.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.517][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:20.517][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:20.517][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.517][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.517][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:20.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:20.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:20.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:20.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:20.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:20.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.549][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:20.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:20.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.549][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:20.549][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:20.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.549][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.549][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:20.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:20.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.564][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:20.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:20.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.564][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:20.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:20.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.564][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:20.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:20.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.564][ef$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:20.580][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:20.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.580][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.580][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:20.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:20.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.580][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:20.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:20.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.596][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:20.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:20.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.596][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:20.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:20.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.596][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:20.596][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:20.596][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.596][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.596][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:20.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:20.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.611][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:20.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:20.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.611][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:20.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:20.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.611][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:20.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:20.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.611][ef$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:20.627][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:20.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.627][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.627][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:20.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:20.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:20.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:20.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:20.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:20.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:20.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:20.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.642][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:20.642][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:20.642][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.642][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:20.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:20.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:20.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:20.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:20.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:20.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:20.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:20.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.674][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:20.674][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:20.674][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.674][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:20.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:20.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:20.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:20.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:20.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:20.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:20.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:20.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.689][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:20.689][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:20.689][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.689][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:20.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:20.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:20.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:20.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:20.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:20.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:20.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:20.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.721][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:20.721][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:20.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.721][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:20.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:20.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:20.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:20.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.736][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:20.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:20.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.736][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:20.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:20.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.736][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:20.736][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:20.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.736][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.736][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:20.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:20.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:20.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:20.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:20.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:20.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:20.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:20.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.767][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:20.767][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:20.767][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.767][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.767][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:20.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:20.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.767][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.783][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.783][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.783][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.799][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:20.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:20.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.799][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:20.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:20.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.799][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:20.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:20.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.814][ef$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:20.814][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:20.814][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.814][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.814][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:20.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:20.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.830][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:20.830][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:20.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.830][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.830][ef$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:20.830][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:20.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.830][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.846][ef$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:20.846][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:20.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.846][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.846][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:20.846][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:20.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.846][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.846][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:20.846][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:20.861][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.861][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.861][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:20.861][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:20.861][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.861][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.861][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:20.861][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:20.861][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.861][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.877][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:20.877][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:20.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.877][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.877][ef$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:20.877][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:20.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.877][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.892][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:20.892][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:20.892][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.892][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.892][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:20.892][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:20.892][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.908][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.908][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.908][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:20.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.908][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.908][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:20.908][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:20.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.908][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.924][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:20.924][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:20.924][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.924][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.924][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:20.924][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:20.924][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.924][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.939][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:20.939][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:20.939][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.939][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:20.939][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:20.939][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:20.939][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:20.939][ef$get] fields variable is a list.
biodb.INFO [2022-03-17 18:34:20.939][biodb::testThat]
biodb.INFO [2022-03-17 18:34:20.955][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2022-03-17 18:34:20.955][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:20.955][biodb::testThat]
biodb.DEBUG[2022-03-17 18:34:20.971][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2022-03-17 18:34:20.971][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2022-03-17 18:34:20.971][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:20.971][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2022-03-17 18:34:20.971][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2022-03-17 18:34:20.986][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:20.986][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2022-03-17 18:34:20.986][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:21.017][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:21.017][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2022-03-17 18:34:21.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:21.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:21.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:21.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:21.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:21.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:21.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:21.033][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:21.033][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:21.033][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.033][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:21.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:21.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.049][ef$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:21.049][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:21.049][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.049][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.049][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:21.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:21.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.064][ef$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:21.064][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:21.064][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.064][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.064][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:21.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:21.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.080][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:21.080][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:21.080][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.080][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:21.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:21.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.111][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:21.111][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:21.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.111][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:21.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:21.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.127][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:21.127][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:21.127][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.127][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.127][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:21.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:21.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.142][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:21.142][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:21.142][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.158][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.158][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:21.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:21.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.158][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:21.158][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:21.158][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.174][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:21.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:21.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.174][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:21.174][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:21.174][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.189][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:21.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:21.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.189][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:21.189][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:21.189][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.205][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:21.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:21.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.205][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:21.205][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:21.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.205][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:21.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:21.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.221][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:21.221][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:21.221][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.221][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:21.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:21.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.236][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:21.236][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:21.236][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.236][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:21.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:21.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.267][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:21.267][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:21.267][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.267][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.267][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:21.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:21.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.283][ef$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:21.283][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:21.283][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.283][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.283][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:21.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:21.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.299][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:21.299][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:21.299][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.299][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.299][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:21.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:21.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.314][ef$get] Asked field names are: super.class.
biodb.TRACE[2022-03-17 18:34:21.314][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:21.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.314][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.314][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2022-03-17 18:34:21.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:21.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:21.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:21.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:21.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:21.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:21.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:21.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.330][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:21.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:21.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.346][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:21.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:21.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.346][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:21.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:21.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.346][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:21.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:21.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.346][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:21.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:21.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.346][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:21.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:21.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:21.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:21.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:21.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:21.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:21.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:21.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:21.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:21.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:21.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:21.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:21.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:21.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:21.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:21.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:21.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:21.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:21.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:21.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:21.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:21.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:21.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:21.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:21.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:21.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:21.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:21.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:21.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:21.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:21.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:21.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.408][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:21.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:21.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.424][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:21.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:21.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.424][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:21.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:21.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.424][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:21.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:21.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.424][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:21.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:21.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.424][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:21.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:21.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:21.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:21.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:21.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:21.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:21.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:21.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:21.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:21.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:21.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:21.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:21.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:21.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:21.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.486][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:21.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:21.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.486][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:21.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:21.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.486][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:21.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:21.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:21.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:21.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:21.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:21.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:21.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.517][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-03-17 18:34:21.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:21.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:21.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:21.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:21.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:21.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.549][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:21.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:21.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.549][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:21.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:21.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.549][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:21.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:21.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.564][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:21.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:21.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.564][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:21.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:21.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:21.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:21.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.580][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:21.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:21.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:21.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:21.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:21.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:21.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:21.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:21.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:21.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:21.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:21.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:21.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:21.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:21.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:21.611][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2022-03-17 18:34:21.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-03-17 18:34:21.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-03-17 18:34:21.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-03-17 18:34:21.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-03-17 18:34:21.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-03-17 18:34:21.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-03-17 18:34:21.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-03-17 18:34:21.627][biodb::testThat]
biodb.INFO [2022-03-17 18:34:21.627][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2022-03-17 18:34:21.627][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:21.627][biodb::testThat]
biodb.TRACE[2022-03-17 18:34:21.627][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:21.627][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:21.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.627][ef$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:21.627][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2022-03-17 18:34:21.658][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:21.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:21.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.658][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:21.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:21.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.658][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:21.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:21.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:21.658][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2022-03-17 18:34:21.689][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2022-03-17 18:34:21.689][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2022-03-17 18:34:21.689][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2022-03-17 18:34:21.705][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:21.705][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:21.705][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2022-03-17 18:34:21.705][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:21.705][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2022-03-17 18:34:21.705][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2022-03-17 18:34:21.721][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2022-03-17 18:34:21.721][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2022-03-17 18:34:21.721][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2022-03-17 18:34:21.721][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2022-03-17 18:34:21.721][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2022-03-17 18:34:21.721][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:21.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:21.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.721][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:21.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:21.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.721][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:21.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:21.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.736][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:21.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:21.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:21.736][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2022-03-17 18:34:21.736][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2022-03-17 18:34:21.736][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2022-03-17 18:34:21.752][ef$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:21.752][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:21.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.752][ef$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:21.752][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2022-03-17 18:34:21.767][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:21.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:21.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.767][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:21.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:21.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.767][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:21.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:21.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:21.783][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2022-03-17 18:34:21.846][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2022-03-17 18:34:21.846][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2022-03-17 18:34:21.846][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2022-03-17 18:34:21.861][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:21.861][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:21.861][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2022-03-17 18:34:21.861][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:21.861][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2022-03-17 18:34:21.877][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2022-03-17 18:34:21.877][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2022-03-17 18:34:21.877][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2022-03-17 18:34:21.877][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2022-03-17 18:34:21.877][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2022-03-17 18:34:21.877][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2022-03-17 18:34:21.892][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:21.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:21.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.892][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:21.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:21.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.892][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:21.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:21.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.892][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:21.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:21.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:21.892][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2022-03-17 18:34:21.892][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2022-03-17 18:34:21.908][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2022-03-17 18:34:21.908][biodb::testThat]
biodb.INFO [2022-03-17 18:34:21.908][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2022-03-17 18:34:21.908][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:21.908][biodb::testThat]
biodb.TRACE[2022-03-17 18:34:21.939][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:21.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:21.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.939][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:21.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:21.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.955][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:21.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:21.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:21.971][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2022-03-17 18:34:21.971][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2022-03-17 18:34:21.971][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2022-03-17 18:34:21.971][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:21.971][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:21.971][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2022-03-17 18:34:21.971][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:21.971][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2022-03-17 18:34:21.986][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2022-03-17 18:34:21.986][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2022-03-17 18:34:21.986][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2022-03-17 18:34:21.986][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2022-03-17 18:34:21.986][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2022-03-17 18:34:21.986][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2022-03-17 18:34:21.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:21.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:21.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:21.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:21.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:21.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:21.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:22.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:22.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:22.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:22.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:22.002][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2022-03-17 18:34:22.002][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2022-03-17 18:34:22.017][biodb::testThat]
biodb.INFO [2022-03-17 18:34:22.017][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2022-03-17 18:34:22.017][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:22.017][biodb::testThat]
biodb.TRACE[2022-03-17 18:34:22.049][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-03-17 18:34:22.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-03-17 18:34:22.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.049][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-03-17 18:34:22.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-03-17 18:34:22.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.049][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-03-17 18:34:22.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-03-17 18:34:22.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.064][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-03-17 18:34:22.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-03-17 18:34:22.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.111][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-03-17 18:34:22.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-03-17 18:34:22.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.111][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-03-17 18:34:22.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-03-17 18:34:22.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.111][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-03-17 18:34:22.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-03-17 18:34:22.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:22.111][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-03-17 18:34:22.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-03-17 18:34:22.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:22.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-03-17 18:34:22.127][biodb::testThat]
biodb.INFO [2022-03-17 18:34:22.127][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2022-03-17 18:34:22.127][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:22.127][biodb::testThat]
biodb.INFO [2022-03-17 18:34:22.127][biodb::testThat]
biodb.INFO [2022-03-17 18:34:22.127][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2022-03-17 18:34:22.127][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:22.127][biodb::testThat]
biodb.INFO [2022-03-17 18:34:22.127][biodb::testThat]
biodb.INFO [2022-03-17 18:34:22.127][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2022-03-17 18:34:22.127][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:22.142][biodb::testThat]
biodb.DEBUG[2022-03-17 18:34:22.142][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2022-03-17 18:34:24.299][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2022-03-17 18:34:25.799][biodb::testThat]
biodb.INFO [2022-03-17 18:34:25.799][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2022-03-17 18:34:25.799][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:25.799][biodb::testThat]
biodb.DEBUG[2022-03-17 18:34:26.064][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2022-03-17 18:34:26.658][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:26.658][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:26.658][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.658][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.658][ef$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:26.658][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:26.658][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.658][ef$get] fields variable is a list.
biodb.INFO [2022-03-17 18:34:26.658][biodb::testThat]
biodb.INFO [2022-03-17 18:34:26.658][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2022-03-17 18:34:26.658][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:26.674][biodb::testThat]
biodb.DEBUG[2022-03-17 18:34:26.674][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2022-03-17 18:34:26.705][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2022-03-17 18:34:26.705][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:26.705][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2022-03-17 18:34:26.721][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2022-03-17 18:34:26.721][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-03-17 18:34:26.721][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-03-17 18:34:26.721][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:26.721][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:26.752][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:26.752][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2022-03-17 18:34:26.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:26.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:26.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:26.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:26.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:26.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:26.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:26.767][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:26.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:26.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.767][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:26.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:26.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:26.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:26.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:26.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:26.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:26.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:26.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:26.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:26.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:26.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:26.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:26.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:26.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:26.799][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2022-03-17 18:34:26.799][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2022-03-17 18:34:26.799][biodb::testThat]
biodb.INFO [2022-03-17 18:34:26.799][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2022-03-17 18:34:26.799][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:26.814][biodb::testThat]
biodb.DEBUG[2022-03-17 18:34:26.814][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2022-03-17 18:34:26.814][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2022-03-17 18:34:26.814][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2022-03-17 18:34:26.814][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:26.814][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2022-03-17 18:34:26.814][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2022-03-17 18:34:26.814][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-03-17 18:34:26.814][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-03-17 18:34:26.830][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:26.830][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:26.846][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:26.846][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2022-03-17 18:34:26.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:26.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:26.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:26.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:26.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:26.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:26.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:26.861][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:26.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:26.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.861][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:26.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:26.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:26.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:26.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:26.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:26.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:26.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:26.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:26.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:26.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:26.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:26.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:26.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:26.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:26.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:26.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:26.908][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2022-03-17 18:34:26.908][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2022-03-17 18:34:26.908][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2022-03-17 18:34:26.924][biodb::testThat]
biodb.INFO [2022-03-17 18:34:26.924][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2022-03-17 18:34:26.924][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:26.924][biodb::testThat]
biodb.INFO [2022-03-17 18:34:26.939][biodb::testThat]
biodb.INFO [2022-03-17 18:34:26.939][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2022-03-17 18:34:26.939][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:26.939][biodb::testThat]
biodb.DEBUG[2022-03-17 18:34:26.939][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:26.939][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:26.955][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2022-03-17 18:34:26.955][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:26.955][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2022-03-17 18:34:26.955][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2022-03-17 18:34:26.955][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2022-03-17 18:34:26.955][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2022-03-17 18:34:26.955][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2022-03-17 18:34:26.971][biodb::testThat]
biodb.INFO [2022-03-17 18:34:26.971][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2022-03-17 18:34:26.971][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:26.971][biodb::testThat]
biodb.DEBUG[2022-03-17 18:34:26.971][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:26.971][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:26.971][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2022-03-17 18:34:26.971][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:26.971][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2022-03-17 18:34:26.986][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2022-03-17 18:34:26.986][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2022-03-17 18:34:26.986][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2022-03-17 18:34:26.986][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2022-03-17 18:34:27.017][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:27.017][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:27.017][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.017][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.017][ef$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:27.017][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:27.017][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.017][ef$get] fields variable is a list.
biodb.INFO [2022-03-17 18:34:27.017][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-03-17 18:34:27.017][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2022-03-17 18:34:27.033][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2022-03-17 18:34:27.033][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-03-17 18:34:27.033][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:27.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:27.033][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.033][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-03-17 18:34:27.033][biodb::testContext]
biodb.INFO [2022-03-17 18:34:27.049][biodb::testContext] ********************************************************************************
biodb.INFO [2022-03-17 18:34:27.049][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2022-03-17 18:34:27.049][biodb::testContext] ********************************************************************************
biodb.INFO [2022-03-17 18:34:27.049][biodb::testContext]
biodb.INFO [2022-03-17 18:34:27.049][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.3.2.
biodb.DEBUG[2022-03-17 18:34:27.064][self$loadDefinitions] Load definitions from file "D:/biocbuild/bbs-3.15-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-03-17 18:34:27.064][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-03-17 18:34:27.064][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-03-17 18:34:27.064][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-03-17 18:34:27.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.064][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-03-17 18:34:27.064][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-03-17 18:34:27.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.064][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-03-17 18:34:27.080][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-03-17 18:34:27.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.080][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-03-17 18:34:27.080][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-03-17 18:34:27.080][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-03-17 18:34:27.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.080][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-03-17 18:34:27.080][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-03-17 18:34:27.080][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-03-17 18:34:27.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.080][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-03-17 18:34:27.080][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-03-17 18:34:27.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.096][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-03-17 18:34:27.096][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-03-17 18:34:27.096][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-03-17 18:34:27.096][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.096][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-03-17 18:34:27.096][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-03-17 18:34:27.096][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.096][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-03-17 18:34:27.096][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-03-17 18:34:27.096][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-03-17 18:34:27.096][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.111][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-03-17 18:34:27.111][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-03-17 18:34:27.111][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-03-17 18:34:27.111][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-03-17 18:34:27.111][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-03-17 18:34:27.111][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-03-17 18:34:27.111][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.111][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-03-17 18:34:27.111][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-03-17 18:34:27.111][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.111][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-03-17 18:34:27.111][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-03-17 18:34:27.111][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.127][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-03-17 18:34:27.127][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-03-17 18:34:27.127][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.127][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-03-17 18:34:27.127][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-03-17 18:34:27.127][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.127][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-03-17 18:34:27.127][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-03-17 18:34:27.127][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.127][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-03-17 18:34:27.127][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-03-17 18:34:27.142][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-03-17 18:34:27.142][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.142][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-03-17 18:34:27.142][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-03-17 18:34:27.142][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-03-17 18:34:27.142][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.142][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-03-17 18:34:27.142][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:27.158][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-03-17 18:34:27.158][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:27.158][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:34:27.158][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:27.158][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:34:27.158][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:27.158][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:34:27.158][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-03-17 18:34:27.158][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:34:27.158][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:27.158][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-03-17 18:34:27.158][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:34:27.158][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:27.158][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:27.158][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-03-17 18:34:27.158][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-03-17 18:34:27.158][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-03-17 18:34:27.158][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-03-17 18:34:27.158][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-03-17 18:34:27.158][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:34:27.158][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:27.158][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:27.174][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:34:27.174][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:27.174][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:27.174][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:34:27.174][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:27.174][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:27.174][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:27.174][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:27.174][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:27.174][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-03-17 18:34:27.174][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:27.174][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-03-17 18:34:27.174][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:27.174][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:34:27.174][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:27.174][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:34:27.174][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:27.189][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:34:27.189][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-03-17 18:34:27.189][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:34:27.189][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:27.189][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-03-17 18:34:27.189][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:34:27.189][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:27.189][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:27.189][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-03-17 18:34:27.189][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-03-17 18:34:27.189][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-03-17 18:34:27.189][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-03-17 18:34:27.189][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-03-17 18:34:27.189][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:34:27.189][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:27.189][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:27.189][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:34:27.189][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:27.189][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:27.189][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:34:27.189][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:27.189][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:27.189][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:27.205][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:27.205][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:27.205][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-03-17 18:34:27.205][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:27.205][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-03-17 18:34:27.205][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:27.205][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:34:27.205][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:27.205][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:34:27.205][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:27.205][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:34:27.205][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-03-17 18:34:27.205][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:34:27.205][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:27.205][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-03-17 18:34:27.205][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:34:27.205][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:27.221][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:27.221][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:27.221][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:34:27.221][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:27.221][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:27.221][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:34:27.221][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:27.221][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:27.221][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:34:27.221][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:27.221][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:27.221][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:27.221][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:27.221][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:27.221][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-03-17 18:34:27.221][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:27.221][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-03-17 18:34:27.236][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:27.236][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:34:27.236][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:27.236][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:34:27.236][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:27.236][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:34:27.236][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-03-17 18:34:27.236][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:34:27.236][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:27.236][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-03-17 18:34:27.236][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:34:27.236][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:27.236][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:27.236][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:27.236][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:34:27.236][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:27.236][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:27.236][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:34:27.252][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:27.252][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:27.252][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:34:27.252][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:27.252][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:27.252][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:27.252][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:27.252][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:27.252][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-03-17 18:34:27.252][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.252][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.267][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.267][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.267][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.267][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.330][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-03-17 18:34:27.330][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-03-17 18:34:27.330][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-03-17 18:34:27.330][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-03-17 18:34:27.330][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-03-17 18:34:27.330][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-03-17 18:34:27.330][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-03-17 18:34:27.330][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-03-17 18:34:27.330][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-03-17 18:34:27.330][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-03-17 18:34:27.330][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-03-17 18:34:27.346][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-03-17 18:34:27.346][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-03-17 18:34:27.346][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-03-17 18:34:27.346][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-03-17 18:34:27.346][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-03-17 18:34:27.346][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-03-17 18:34:27.346][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-03-17 18:34:27.346][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-03-17 18:34:27.346][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-03-17 18:34:27.346][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-03-17 18:34:27.346][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-03-17 18:34:27.346][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-03-17 18:34:27.346][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-03-17 18:34:27.361][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-03-17 18:34:27.361][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-03-17 18:34:27.361][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-03-17 18:34:27.361][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-03-17 18:34:27.361][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-03-17 18:34:27.361][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-03-17 18:34:27.361][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-03-17 18:34:27.361][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-03-17 18:34:27.361][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-03-17 18:34:27.361][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-03-17 18:34:27.361][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-03-17 18:34:27.361][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-03-17 18:34:27.377][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-03-17 18:34:27.377][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-03-17 18:34:27.377][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-03-17 18:34:27.377][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-03-17 18:34:27.377][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-03-17 18:34:27.377][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-03-17 18:34:27.377][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-03-17 18:34:27.377][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-03-17 18:34:27.377][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-03-17 18:34:27.377][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-03-17 18:34:27.392][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-03-17 18:34:27.392][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-03-17 18:34:27.392][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-03-17 18:34:27.392][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-03-17 18:34:27.392][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-03-17 18:34:27.392][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-03-17 18:34:27.392][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-03-17 18:34:27.392][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-03-17 18:34:27.392][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-03-17 18:34:27.392][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-03-17 18:34:27.392][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-03-17 18:34:27.392][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-03-17 18:34:27.392][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-03-17 18:34:27.408][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-03-17 18:34:27.408][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-03-17 18:34:27.408][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-03-17 18:34:27.408][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-03-17 18:34:27.408][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-03-17 18:34:27.408][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-03-17 18:34:27.408][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-03-17 18:34:27.408][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-03-17 18:34:27.408][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-03-17 18:34:27.408][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-03-17 18:34:27.408][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-03-17 18:34:27.408][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-03-17 18:34:27.408][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-03-17 18:34:27.424][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-03-17 18:34:27.424][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-03-17 18:34:27.424][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-03-17 18:34:27.424][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-03-17 18:34:27.424][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-03-17 18:34:27.424][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-03-17 18:34:27.424][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-03-17 18:34:27.424][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-03-17 18:34:27.424][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-03-17 18:34:27.424][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-03-17 18:34:27.424][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-03-17 18:34:27.424][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-03-17 18:34:27.424][initialize] This is biodb version 1.3.2.
biodb.DEBUG[2022-03-17 18:34:27.439][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-03-17 18:34:27.439][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.439][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:27.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:27.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:27.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:27.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:27.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:27.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:27.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:27.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:27.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:27.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:27.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:27.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:27.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:27.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:27.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:27.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.486][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:27.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:27.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.486][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:27.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:27.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:27.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:27.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:27.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:27.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:27.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:27.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.517][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:27.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:27.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.517][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:27.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:27.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.517][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:27.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:27.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:27.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:27.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:27.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:27.533][biodb$loadDefinitions] Load definitions from file "D:/biocbuild/bbs-3.15-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2022-03-17 18:34:27.533][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2022-03-17 18:34:27.533][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:27.533][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-03-17 18:34:27.533][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:27.533][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:34:27.533][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:27.533][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:27.549][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:27.549][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2022-03-17 18:34:27.549][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2022-03-17 18:34:27.564][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:27.564][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:27.564][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:27.564][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:27.564][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-03-17 18:34:27.564][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-03-17 18:34:27.564][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-03-17 18:34:27.564][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-03-17 18:34:27.564][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2022-03-17 18:34:27.564][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2022-03-17 18:34:27.564][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2022-03-17 18:34:27.564][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2022-03-17 18:34:27.564][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-03-17 18:34:27.564][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-03-17 18:34:27.580][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2022-03-17 18:34:27.580][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2022-03-17 18:34:27.580][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2022-03-17 18:34:27.580][self$setPropertyValue] Setting property "urls" to "D:/biocbuild/bbs-3.15-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2022-03-17 18:34:27.580][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:27.580][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:27.580][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2022-03-17 18:34:27.580][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2022-03-17 18:34:27.580][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2022-03-17 18:34:27.580][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2022-03-17 18:34:27.580][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-03-17 18:34:27.580][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-03-17 18:34:27.580][private$addConnectorRules] Create new rule for URL "D:/biocbuild/bbs-3.15-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2022-03-17 18:34:27.580][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-03-17 18:34:27.580][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2022-03-17 18:34:27.580][biodb::testThat]
biodb.INFO [2022-03-17 18:34:27.580][biodb::testThat] Running test function test.hmdbmetabolite.nbentries (" HMDB metabolite returns enough entries. ").
biodb.INFO [2022-03-17 18:34:27.596][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:27.596][biodb::testThat]
biodb.DEBUG[2022-03-17 18:34:27.596][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:27.596][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:27.596][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2022-03-17 18:34:27.596][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:27.596][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2022-03-17 18:34:27.611][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2022-03-17 18:34:27.611][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2022-03-17 18:34:27.611][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2022-03-17 18:34:27.611][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2022-03-17 18:34:27.611][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2022-03-17 18:34:27.627][biodb::testThat]
biodb.INFO [2022-03-17 18:34:27.627][biodb::testThat] Running test function test.old.accession (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2022-03-17 18:34:27.627][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:27.627][biodb::testThat]
biodb.DEBUG[2022-03-17 18:34:27.627][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2022-03-17 18:34:27.627][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2022-03-17 18:34:27.627][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:27.627][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2022-03-17 18:34:27.627][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2022-03-17 18:34:27.627][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:27.627][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2022-03-17 18:34:27.627][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:27.658][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:27.658][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2022-03-17 18:34:27.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:27.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:27.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:27.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:27.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:27.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:27.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:27.674][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:27.674][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:27.674][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.674][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:27.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:27.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.689][ef$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:27.689][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:27.689][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.689][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.705][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:27.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:27.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.721][ef$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:27.721][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:27.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.721][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.721][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:27.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:27.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.736][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:27.736][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:27.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.736][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:27.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:27.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.752][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:27.752][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:27.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.752][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:27.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:27.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.767][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:27.767][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:27.767][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.767][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.767][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:27.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:27.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.783][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:27.783][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:27.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.783][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.783][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:27.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:27.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.799][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:27.799][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:27.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.799][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:27.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:27.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.814][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:27.814][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:27.814][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.814][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:27.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:27.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.846][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:27.846][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:27.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.846][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:27.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:27.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.861][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:27.861][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:27.861][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.861][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:27.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:27.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.877][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:27.877][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:27.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.877][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:27.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:27.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.892][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:27.892][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:27.892][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.892][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:27.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:27.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.908][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:27.908][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:27.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.908][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.908][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:27.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:27.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.924][ef$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:27.924][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:27.924][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.924][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.924][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:27.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:27.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.924][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:27.939][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:27.939][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.939][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.939][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:27.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:27.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.939][ef$get] Asked field names are: super.class.
biodb.TRACE[2022-03-17 18:34:27.955][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:27.955][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.955][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.955][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2022-03-17 18:34:27.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:27.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:27.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:27.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:27.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:27.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:27.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:27.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:27.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:27.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.002][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:28.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:28.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.002][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:28.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:28.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.002][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:28.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:28.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.017][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:28.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:28.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.017][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:28.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:28.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.017][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:28.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:28.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:28.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:28.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:28.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:28.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:28.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:28.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:28.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:28.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:28.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:28.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:28.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:28.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:28.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:28.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:28.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:28.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:28.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:28.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:28.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:28.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:28.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:28.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:28.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:28.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:28.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:28.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:28.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:28.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:28.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:28.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.080][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:28.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:28.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.080][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:28.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:28.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.080][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:28.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:28.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.096][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:28.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:28.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.096][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:28.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:28.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.096][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:28.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:28.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:28.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:28.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:28.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:28.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.111][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:28.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:28.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.111][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:28.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:28.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.111][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:28.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:28.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.111][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:28.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:28.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.127][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:28.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:28.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.127][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:28.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:28.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.127][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:28.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:28.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:28.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:28.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:28.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:28.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:28.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:28.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.142][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:28.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:28.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.142][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:28.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:28.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.142][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:28.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:28.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.158][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:28.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:28.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.158][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:28.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:28.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.158][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:28.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:28.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.158][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:28.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:28.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.158][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:28.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:28.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.174][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:28.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:28.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.174][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-03-17 18:34:28.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:28.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:28.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:28.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:28.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:28.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:28.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:28.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.189][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-03-17 18:34:28.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:28.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.205][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:28.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:28.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.205][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:28.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:28.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.205][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:28.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:28.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:28.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:28.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:28.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:28.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.236][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:28.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:28.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.252][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:28.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:28.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:28.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:28.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.252][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:28.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:28.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:28.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:28.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:28.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:28.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:28.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:28.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:28.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:28.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:28.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:28.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:28.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:28.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:28.299][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2022-03-17 18:34:28.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:28.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:28.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:28.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:28.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:28.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:28.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:28.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:28.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-03-17 18:34:28.330][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-03-17 18:34:28.330][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2022-03-17 18:34:28.346][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2022-03-17 18:34:28.346][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-03-17 18:34:28.346][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:28.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:28.346][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.346][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-03-17 18:34:28.346][biodb::testContext]
biodb.INFO [2022-03-17 18:34:28.346][biodb::testContext] ********************************************************************************
biodb.INFO [2022-03-17 18:34:28.361][biodb::testContext] Test context - Test search of entries
biodb.INFO [2022-03-17 18:34:28.361][biodb::testContext] ********************************************************************************
biodb.INFO [2022-03-17 18:34:28.361][biodb::testContext]
biodb.INFO [2022-03-17 18:34:28.361][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.3.2.
biodb.DEBUG[2022-03-17 18:34:28.377][self$loadDefinitions] Load definitions from file "D:/biocbuild/bbs-3.15-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-03-17 18:34:28.377][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-03-17 18:34:28.377][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-03-17 18:34:28.377][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-03-17 18:34:28.377][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.377][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-03-17 18:34:28.377][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-03-17 18:34:28.377][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.377][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-03-17 18:34:28.377][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-03-17 18:34:28.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.392][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-03-17 18:34:28.392][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-03-17 18:34:28.392][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-03-17 18:34:28.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.392][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-03-17 18:34:28.392][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-03-17 18:34:28.392][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-03-17 18:34:28.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.392][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-03-17 18:34:28.392][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-03-17 18:34:28.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.408][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-03-17 18:34:28.408][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-03-17 18:34:28.408][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-03-17 18:34:28.408][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.408][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-03-17 18:34:28.408][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-03-17 18:34:28.408][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.408][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-03-17 18:34:28.408][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-03-17 18:34:28.408][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-03-17 18:34:28.408][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.408][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-03-17 18:34:28.424][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-03-17 18:34:28.424][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-03-17 18:34:28.424][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-03-17 18:34:28.424][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-03-17 18:34:28.424][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-03-17 18:34:28.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.424][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-03-17 18:34:28.424][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-03-17 18:34:28.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.424][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-03-17 18:34:28.424][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-03-17 18:34:28.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.424][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-03-17 18:34:28.439][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-03-17 18:34:28.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.439][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-03-17 18:34:28.439][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-03-17 18:34:28.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.439][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-03-17 18:34:28.439][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-03-17 18:34:28.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.439][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-03-17 18:34:28.439][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-03-17 18:34:28.439][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-03-17 18:34:28.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.455][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-03-17 18:34:28.455][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-03-17 18:34:28.455][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-03-17 18:34:28.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.455][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-03-17 18:34:28.455][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:28.455][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-03-17 18:34:28.455][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:28.471][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:34:28.471][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:28.471][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:34:28.471][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:28.471][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:34:28.471][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-03-17 18:34:28.471][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:34:28.471][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:28.471][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-03-17 18:34:28.471][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:34:28.471][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:28.471][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:28.471][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-03-17 18:34:28.471][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-03-17 18:34:28.471][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-03-17 18:34:28.471][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-03-17 18:34:28.471][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-03-17 18:34:28.471][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:34:28.471][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:28.471][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:28.471][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:34:28.486][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:28.486][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:28.486][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:34:28.486][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:28.486][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:28.486][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:28.486][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:28.486][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:28.486][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-03-17 18:34:28.486][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:28.486][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-03-17 18:34:28.486][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:28.486][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:34:28.486][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:28.486][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:34:28.486][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:28.486][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:34:28.486][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-03-17 18:34:28.502][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:34:28.502][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:28.502][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-03-17 18:34:28.502][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:34:28.502][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:28.502][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:28.502][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-03-17 18:34:28.502][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-03-17 18:34:28.502][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-03-17 18:34:28.502][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-03-17 18:34:28.502][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-03-17 18:34:28.502][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:34:28.502][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:28.502][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:28.502][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:34:28.502][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:28.502][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:28.502][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:34:28.502][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:28.502][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:28.502][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:28.502][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:28.517][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:28.517][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-03-17 18:34:28.517][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:28.517][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-03-17 18:34:28.517][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:28.517][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:34:28.517][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:28.517][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:34:28.517][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:28.517][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:34:28.517][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-03-17 18:34:28.517][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:34:28.517][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:28.517][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-03-17 18:34:28.517][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:34:28.517][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:28.517][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:28.533][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:28.533][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:34:28.533][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:28.533][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:28.533][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:34:28.533][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:28.533][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:28.533][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:34:28.533][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:28.533][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:28.533][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:28.533][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:28.533][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:28.533][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-03-17 18:34:28.533][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:28.533][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-03-17 18:34:28.533][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:28.549][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:34:28.549][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:28.549][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-03-17 18:34:28.549][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:28.549][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:34:28.549][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-03-17 18:34:28.549][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:34:28.549][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:28.549][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-03-17 18:34:28.549][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:34:28.549][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:28.549][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:28.549][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:28.549][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-03-17 18:34:28.549][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:28.549][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:28.549][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:34:28.549][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:28.564][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:28.564][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:34:28.564][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:28.564][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:28.564][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:28.564][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:28.564][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:28.564][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-03-17 18:34:28.564][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.642][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-03-17 18:34:28.642][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-03-17 18:34:28.642][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-03-17 18:34:28.642][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-03-17 18:34:28.642][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-03-17 18:34:28.642][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-03-17 18:34:28.642][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-03-17 18:34:28.642][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-03-17 18:34:28.642][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-03-17 18:34:28.642][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-03-17 18:34:28.642][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-03-17 18:34:28.642][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-03-17 18:34:28.658][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-03-17 18:34:28.658][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-03-17 18:34:28.658][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-03-17 18:34:28.658][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-03-17 18:34:28.658][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-03-17 18:34:28.658][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-03-17 18:34:28.658][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-03-17 18:34:28.658][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-03-17 18:34:28.658][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-03-17 18:34:28.658][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-03-17 18:34:28.658][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-03-17 18:34:28.658][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-03-17 18:34:28.658][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-03-17 18:34:28.674][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-03-17 18:34:28.674][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-03-17 18:34:28.674][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-03-17 18:34:28.674][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-03-17 18:34:28.674][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-03-17 18:34:28.674][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-03-17 18:34:28.674][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-03-17 18:34:28.674][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-03-17 18:34:28.674][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-03-17 18:34:28.689][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-03-17 18:34:28.689][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-03-17 18:34:28.689][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-03-17 18:34:28.689][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-03-17 18:34:28.689][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-03-17 18:34:28.689][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-03-17 18:34:28.689][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-03-17 18:34:28.689][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-03-17 18:34:28.689][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-03-17 18:34:28.689][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-03-17 18:34:28.689][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-03-17 18:34:28.689][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-03-17 18:34:28.689][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-03-17 18:34:28.705][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-03-17 18:34:28.705][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-03-17 18:34:28.705][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-03-17 18:34:28.705][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-03-17 18:34:28.705][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-03-17 18:34:28.705][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-03-17 18:34:28.705][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-03-17 18:34:28.705][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-03-17 18:34:28.705][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-03-17 18:34:28.705][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-03-17 18:34:28.705][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-03-17 18:34:28.705][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-03-17 18:34:28.705][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-03-17 18:34:28.721][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-03-17 18:34:28.721][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-03-17 18:34:28.721][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-03-17 18:34:28.721][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-03-17 18:34:28.721][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-03-17 18:34:28.721][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-03-17 18:34:28.721][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-03-17 18:34:28.721][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-03-17 18:34:28.721][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-03-17 18:34:28.721][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-03-17 18:34:28.721][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-03-17 18:34:28.721][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-03-17 18:34:28.721][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-03-17 18:34:28.736][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-03-17 18:34:28.736][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-03-17 18:34:28.736][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-03-17 18:34:28.736][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-03-17 18:34:28.736][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-03-17 18:34:28.736][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-03-17 18:34:28.736][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-03-17 18:34:28.736][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-03-17 18:34:28.736][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-03-17 18:34:28.736][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-03-17 18:34:28.736][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-03-17 18:34:28.736][initialize] This is biodb version 1.3.2.
biodb.DEBUG[2022-03-17 18:34:28.736][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-03-17 18:34:28.752][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.752][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:28.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:28.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:28.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:28.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:28.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:28.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:28.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:28.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:28.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:28.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:28.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:28.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.799][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:28.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:28.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.799][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:28.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:28.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:28.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:28.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:28.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:28.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:28.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:28.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:28.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:28.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:28.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:28.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:28.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:28.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:28.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:28.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:28.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:28.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-03-17 18:34:28.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:28.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:28.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:28.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:28.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:28.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:28.877][biodb$loadDefinitions] Load definitions from file "D:/biocbuild/bbs-3.15-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2022-03-17 18:34:28.877][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2022-03-17 18:34:28.892][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-03-17 18:34:28.908][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:28.908][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:28.908][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-03-17 18:34:28.908][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-03-17 18:34:28.908][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-03-17 18:34:28.908][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-03-17 18:34:28.908][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2022-03-17 18:34:28.908][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2022-03-17 18:34:28.908][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:28.908][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:28.908][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-03-17 18:34:28.908][self$setPropertyValue]
biodb.DEBUG[2022-03-17 18:34:28.908][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-03-17 18:34:28.908][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-03-17 18:34:28.908][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-03-17 18:34:28.908][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-03-17 18:34:28.924][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2022-03-17 18:34:28.924][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2022-03-17 18:34:28.924][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2022-03-17 18:34:28.924][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2022-03-17 18:34:28.924][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-03-17 18:34:28.924][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-03-17 18:34:28.924][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2022-03-17 18:34:28.924][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2022-03-17 18:34:28.924][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2022-03-17 18:34:28.924][self$setPropertyValue] Setting property "urls" to "D:/biocbuild/bbs-3.15-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2022-03-17 18:34:28.924][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-03-17 18:34:28.924][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-03-17 18:34:28.924][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2022-03-17 18:34:28.924][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2022-03-17 18:34:28.924][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2022-03-17 18:34:28.939][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2022-03-17 18:34:28.939][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-03-17 18:34:28.939][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-03-17 18:34:28.939][private$addConnectorRules] Create new rule for URL "D:/biocbuild/bbs-3.15-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2022-03-17 18:34:28.939][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-03-17 18:34:28.939][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2022-03-17 18:34:28.939][biodb::testThat]
biodb.INFO [2022-03-17 18:34:28.939][biodb::testThat] Running test function test.searchMultipleWordsInDescription (" We can search for multiple words inside description field. ").
biodb.INFO [2022-03-17 18:34:28.939][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-03-17 18:34:28.939][biodb::testThat]
biodb.DEBUG[2022-03-17 18:34:28.971][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2022-03-17 18:34:28.971][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2022-03-17 18:34:28.971][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2022-03-17 18:34:28.971][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:28.971][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:28.986][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2022-03-17 18:34:28.986][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:28.986][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2022-03-17 18:34:28.986][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2022-03-17 18:34:28.986][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2022-03-17 18:34:28.986][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2022-03-17 18:34:28.986][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2022-03-17 18:34:29.002][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2022-03-17 18:34:29.002][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2022-03-17 18:34:29.002][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2022-03-17 18:34:29.002][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2022-03-17 18:34:29.002][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:29.002][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2022-03-17 18:34:29.002][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2022-03-17 18:34:29.002][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:29.002][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2022-03-17 18:34:29.002][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:29.017][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:29.033][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2022-03-17 18:34:29.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:29.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:29.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:29.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:29.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:29.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:29.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:29.033][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:29.049][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:29.049][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.049][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:29.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:29.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.064][ef$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:29.064][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:29.064][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.064][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.080][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:29.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:29.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.096][ef$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:29.096][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:29.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.096][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.096][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:29.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:29.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.111][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:29.111][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:29.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.111][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:29.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:29.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.127][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:29.127][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:29.127][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.127][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:29.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:29.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.142][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:29.142][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:29.142][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.142][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.142][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:29.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:29.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.158][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:29.158][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:29.158][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.158][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:29.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:29.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.174][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:29.174][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:29.174][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.174][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:29.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:29.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.189][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:29.189][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:29.189][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.189][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:29.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:29.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.205][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:29.205][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:29.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.205][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.221][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:29.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:29.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.221][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:29.221][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:29.221][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.221][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:29.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:29.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.236][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:29.236][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:29.236][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.236][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:29.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:29.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.252][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:29.252][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:29.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.252][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:29.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:29.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.267][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:29.267][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:29.267][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.283][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.283][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:29.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:29.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.299][ef$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:29.299][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:29.299][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.299][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.299][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:29.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:29.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.314][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:29.314][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:29.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.314][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.314][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:29.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:29.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.330][ef$get] Asked field names are: super.class.
biodb.TRACE[2022-03-17 18:34:29.330][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:29.330][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.330][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.330][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2022-03-17 18:34:29.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:29.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:29.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:29.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:29.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:29.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:29.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:29.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.361][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:29.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:29.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.361][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:29.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:29.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.361][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:29.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:29.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.361][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:29.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:29.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.361][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:29.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:29.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.377][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:29.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:29.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:29.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:29.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:29.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:29.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:29.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:29.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:29.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:29.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:29.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:29.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:29.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:29.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:29.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:29.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:29.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:29.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:29.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:29.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:29.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:29.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:29.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:29.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:29.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:29.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:29.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:29.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:29.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:29.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:29.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:29.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.439][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:29.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:29.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.439][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:29.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:29.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.439][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:29.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:29.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.455][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:29.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:29.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.455][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:29.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:29.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.455][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:29.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:29.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:29.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:29.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:29.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:29.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:29.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:29.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:29.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:29.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:29.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:29.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:29.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:29.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.486][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:29.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:29.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.486][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:29.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:29.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.486][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:29.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:29.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:29.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:29.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:29.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:29.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:29.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:29.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:29.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:29.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:29.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:29.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.517][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:29.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:29.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:29.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:29.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:29.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:29.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:29.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:29.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:29.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:29.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:29.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:29.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:29.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:29.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.549][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-03-17 18:34:29.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:29.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:29.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:29.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:29.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:29.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:29.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:29.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.564][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-03-17 18:34:29.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:29.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.564][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:29.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:29.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.580][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:29.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:29.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.580][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:29.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:29.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.580][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:29.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:29.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.580][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:29.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:29.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.596][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:29.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:29.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.596][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:29.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:29.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:29.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:29.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.611][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:29.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:29.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:29.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:29.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:29.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:29.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:29.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:29.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:29.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:29.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:29.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:29.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:29.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:29.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:29.642][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2022-03-17 18:34:29.642][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:29.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:29.658][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2022-03-17 18:34:29.674][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2022-03-17 18:34:29.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:29.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:29.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:29.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:29.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:29.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:29.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:29.674][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2022-03-17 18:34:29.674][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2022-03-17 18:34:29.674][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:29.689][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2022-03-17 18:34:29.689][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2022-03-17 18:34:29.689][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-03-17 18:34:29.689][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2022-03-17 18:34:29.689][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2022-03-17 18:34:29.705][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2022-03-17 18:34:29.705][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2022-03-17 18:34:29.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:29.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:29.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:29.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:29.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:29.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:29.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:29.721][ef$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:29.721][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:29.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.721][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:29.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:29.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.736][ef$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:29.736][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:29.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.736][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.736][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:29.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:29.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.752][ef$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:29.752][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:29.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.752][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.767][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:29.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:29.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.767][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:29.783][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:29.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.783][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:29.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:29.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.799][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:29.799][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:29.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.799][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:29.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:29.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.814][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:29.814][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:29.814][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.814][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.814][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:29.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:29.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.830][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:29.830][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:29.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.830][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.830][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:29.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:29.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.846][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:29.846][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:29.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.846][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:29.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:29.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.861][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:29.861][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:29.861][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.861][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:29.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:29.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.877][ef$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:29.877][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:29.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.877][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.877][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:29.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:29.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.892][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:29.892][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:29.892][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.892][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:29.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:29.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.908][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:29.908][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:29.924][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.924][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:29.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:29.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.924][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:29.939][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:29.939][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.939][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:29.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:29.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.955][ef$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:29.955][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:29.955][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.955][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.955][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:29.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:29.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.971][ef$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:29.971][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:29.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.971][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.971][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:29.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:29.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.986][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:29.986][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:29.986][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.986][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:29.986][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:29.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:29.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:29.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.002][ef$get] Asked field names are: super.class.
biodb.TRACE[2022-03-17 18:34:30.002][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:30.002][ef$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.002][ef$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.002][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2022-03-17 18:34:30.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:30.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:30.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:30.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:30.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:30.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:30.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:30.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.017][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:30.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:30.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.033][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:30.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:30.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.033][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-03-17 18:34:30.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-03-17 18:34:30.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.033][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:30.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:30.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.049][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:30.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:30.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.049][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-03-17 18:34:30.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-03-17 18:34:30.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:30.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:30.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:30.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:30.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-03-17 18:34:30.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-03-17 18:34:30.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:30.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:30.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:30.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:30.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:30.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-03-17 18:34:30.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:30.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:30.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:30.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:30.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:30.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-03-17 18:34:30.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:30.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:30.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:30.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:30.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:30.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-03-17 18:34:30.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:30.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:30.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:30.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:30.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:30.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-03-17 18:34:30.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.111][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.111][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.111][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.111][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:30.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:30.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.111][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:30.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:30.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-03-17 18:34:30.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-03-17 18:34:30.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:30.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:30.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:30.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:30.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-03-17 18:34:30.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-03-17 18:34:30.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:30.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:30.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:30.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:30.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:30.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:30.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.142][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:30.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:30.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.158][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:30.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:30.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.158][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:30.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-03-17 18:34:30.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:30.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:30.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:30.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:30.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:30.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-03-17 18:34:30.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.174][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:30.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:30.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.174][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:30.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:30.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.174][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:30.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:30.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:30.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:30.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:30.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:30.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:30.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-03-17 18:34:30.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.189][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:30.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:30.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.205][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:30.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:30.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.205][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-03-17 18:34:30.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-03-17 18:34:30.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.205][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-03-17 18:34:30.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:30.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:30.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:30.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:30.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:30.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-03-17 18:34:30.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:30.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.221][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-03-17 18:34:30.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-03-17 18:34:30.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.236][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:30.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:30.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.236][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:30.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:30.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.236][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:30.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:30.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.236][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:30.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:30.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-03-17 18:34:30.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-03-17 18:34:30.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.252][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:30.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:30.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.267][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:30.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:30.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:30.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:30.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.267][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:30.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-03-17 18:34:30.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:30.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:30.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:30.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:30.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:30.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:30.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:30.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:30.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:30.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:30.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-03-17 18:34:30.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-03-17 18:34:30.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:30.314][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2022-03-17 18:34:30.314][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.314][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.330][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.330][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:30.330][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2022-03-17 18:34:30.330][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2022-03-17 18:34:30.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:30.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:30.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:30.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:30.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:30.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:30.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:30.361][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2022-03-17 18:34:30.361][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2022-03-17 18:34:30.377][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2022-03-17 18:34:30.377][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:30.377][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:30.377][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2022-03-17 18:34:30.377][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:30.377][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2022-03-17 18:34:30.392][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2022-03-17 18:34:30.392][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2022-03-17 18:34:30.392][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2022-03-17 18:34:30.392][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2022-03-17 18:34:30.392][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2022-03-17 18:34:30.392][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2022-03-17 18:34:30.392][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.408][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.408][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.408][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.408][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.424][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.424][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:30.424][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2022-03-17 18:34:30.424][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2022-03-17 18:34:30.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:30.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:30.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:30.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:30.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:30.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:30.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:30.439][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.439][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.439][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.439][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.455][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.455][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.455][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:30.455][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2022-03-17 18:34:30.455][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2022-03-17 18:34:30.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:30.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:30.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:30.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:30.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:30.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:30.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-03-17 18:34:30.502][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2022-03-17 18:34:30.502][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2022-03-17 18:34:30.502][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2022-03-17 18:34:30.502][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:30.502][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:30.502][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2022-03-17 18:34:30.517][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-03-17 18:34:30.517][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2022-03-17 18:34:30.517][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2022-03-17 18:34:30.517][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2022-03-17 18:34:30.517][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2022-03-17 18:34:30.533][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2022-03-17 18:34:30.533][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2022-03-17 18:34:30.533][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2022-03-17 18:34:30.533][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.533][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.533][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.533][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.549][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.549][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.549][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:30.549][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2022-03-17 18:34:30.549][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2022-03-17 18:34:30.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:30.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:30.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:30.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:30.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:30.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:30.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-03-17 18:34:30.564][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.564][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.580][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.580][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.580][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.580][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-03-17 18:34:30.596][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-03-17 18:34:30.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-03-17 18:34:30.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-03-17 18:34:30.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-03-17 18:34:30.596][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2022-03-17 18:34:30.596][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2022-03-17 18:34:30.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-03-17 18:34:30.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:30.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:30.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:30.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:30.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:30.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-03-17 18:34:30.611][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-03-17 18:34:30.611][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2022-03-17 18:34:30.611][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2022-03-17 18:34:30.611][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-03-17 18:34:30.611][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-03-17 18:34:30.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-03-17 18:34:30.611][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-03-17 18:34:30.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-03-17 18:34:30.611][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-03-17 18:34:30.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 186 ]
>
> proc.time()
user system elapsed
10.17 0.78 13.67
biodbHmdb.Rcheck/biodbHmdb-Ex.timings
| name | user | system | elapsed | |
| HmdbMetabolitesConn | 2.33 | 1.13 | 3.46 | |
| HmdbMetabolitesEntry | 0.47 | 0.00 | 0.47 | |