Pierrick Roger
| Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022) |
| git_url: https://git.bioconductor.org/packages/biodbHmdb |
| git_branch: RELEASE_3_15 |
| git_last_commit: 633a5f0 |
| git_last_commit_date: 2022-09-23 13:17:22 -0400 (Fri, 23 Sep 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-10-19 13:21:10 -0400 (Wed, 19 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the biodbHmdb package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 179/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbHmdb 1.2.0 (landing page) Pierrick Roger
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: biodbHmdb |
| Version: 1.2.0 |
| Command: F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings biodbHmdb_1.2.0.tar.gz |
| StartedAt: 2022-10-18 22:23:15 -0400 (Tue, 18 Oct 2022) |
| EndedAt: 2022-10-18 22:25:06 -0400 (Tue, 18 Oct 2022) |
| EllapsedTime: 111.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbHmdb.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings biodbHmdb_1.2.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.15-bioc/meat/biodbHmdb.Rcheck' * using R version 4.2.1 (2022-06-23 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'biodbHmdb/DESCRIPTION' ... OK * this is package 'biodbHmdb' version '1.2.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'biodbHmdb' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files for x64 is not available File 'F:/biocbuild/bbs-3.15-bioc/R/library/biodbHmdb/libs/x64/biodbHmdb.dll': Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Found 'exit', possibly from 'exit' (C), 'stop' (Fortran) Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs. The detected symbols are linked into the code but might come from libraries and not actually be called. See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'F:/biocbuild/bbs-3.15-bioc/meat/biodbHmdb.Rcheck/00check.log' for details.
biodbHmdb.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL biodbHmdb ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'biodbHmdb' ... ** using staged installation ** libs g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/testthat/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/testthat/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Tag.cpp -o Tag.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/testthat/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c extractXmlEntries.cpp -o extractXmlEntries.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/testthat/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test-100-tag.cpp -o test-100-tag.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/testthat/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test-runner.cpp -o test-runner.o g++ -std=gnu++11 -shared -s -static-libgcc -o biodbHmdb.dll tmp.def RcppExports.o Tag.o extractXmlEntries.o test-100-tag.o test-runner.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbHmdb)
biodbHmdb.Rcheck/tests/testthat.Rout
R version 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2022-10-18 22:24:44.240][biodb::testContext]
biodb.INFO [2022-10-18 22:24:44.243][biodb::testContext] ********************************************************************************
biodb.INFO [2022-10-18 22:24:44.245][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2022-10-18 22:24:44.246][biodb::testContext] ********************************************************************************
biodb.INFO [2022-10-18 22:24:44.248][biodb::testContext]
biodb.INFO [2022-10-18 22:24:44.250][biodb::testThat]
biodb.INFO [2022-10-18 22:24:44.251][biodb::testThat] Running test function test_extractXmlEntries (" extractXmlEntries() works fine. ").
biodb.INFO [2022-10-18 22:24:44.252][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-18 22:24:44.255][biodb::testThat]
biodb.INFO [2022-10-18 22:24:44.423][biodb::testContext]
biodb.INFO [2022-10-18 22:24:44.424][biodb::testContext] ********************************************************************************
biodb.INFO [2022-10-18 22:24:44.426][biodb::testContext] Test context - Generic tests
biodb.INFO [2022-10-18 22:24:44.427][biodb::testContext] ********************************************************************************
biodb.INFO [2022-10-18 22:24:44.428][biodb::testContext]
biodb.INFO [2022-10-18 22:24:44.446][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.4.2.
biodb.DEBUG[2022-10-18 22:24:44.449][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.15-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-10-18 22:24:44.457][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-10-18 22:24:44.459][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-10-18 22:24:44.460][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-10-18 22:24:44.461][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.465][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-10-18 22:24:44.481][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-10-18 22:24:44.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.485][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-10-18 22:24:44.487][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-10-18 22:24:44.488][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.491][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-10-18 22:24:44.493][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-10-18 22:24:44.494][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-10-18 22:24:44.495][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.499][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-10-18 22:24:44.500][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-10-18 22:24:44.501][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-10-18 22:24:44.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.506][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-10-18 22:24:44.507][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-10-18 22:24:44.508][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.511][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-10-18 22:24:44.512][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-10-18 22:24:44.514][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-10-18 22:24:44.515][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.518][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-10-18 22:24:44.519][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-10-18 22:24:44.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.525][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-10-18 22:24:44.526][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-10-18 22:24:44.527][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-10-18 22:24:44.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.532][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-10-18 22:24:44.533][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-10-18 22:24:44.534][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-10-18 22:24:44.536][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-10-18 22:24:44.537][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-10-18 22:24:44.538][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-10-18 22:24:44.539][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.542][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-10-18 22:24:44.544][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-10-18 22:24:44.545][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.548][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-10-18 22:24:44.549][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-10-18 22:24:44.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.554][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-10-18 22:24:44.555][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-10-18 22:24:44.556][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.560][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-10-18 22:24:44.562][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-10-18 22:24:44.563][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.568][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-10-18 22:24:44.570][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-10-18 22:24:44.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.578][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-10-18 22:24:44.579][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-10-18 22:24:44.584][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-10-18 22:24:44.585][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.589][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-10-18 22:24:44.590][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-10-18 22:24:44.591][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-10-18 22:24:44.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.598][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-10-18 22:24:44.627][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:44.642][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-10-18 22:24:44.643][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:44.645][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-18 22:24:44.646][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:44.647][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-18 22:24:44.649][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:44.650][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-18 22:24:44.651][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-10-18 22:24:44.652][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-18 22:24:44.654][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:44.655][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-10-18 22:24:44.656][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-18 22:24:44.665][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:44.666][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:44.667][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-18 22:24:44.667][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-10-18 22:24:44.667][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-10-18 22:24:44.667][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-10-18 22:24:44.667][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-10-18 22:24:44.669][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-18 22:24:44.670][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:44.671][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:44.672][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-18 22:24:44.673][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:44.674][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:44.676][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-18 22:24:44.677][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:44.678][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-18 22:24:44.679][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-18 22:24:44.680][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:44.682][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:44.683][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-10-18 22:24:44.685][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:44.687][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-10-18 22:24:44.688][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:44.689][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-18 22:24:44.690][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:44.691][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-18 22:24:44.693][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:44.694][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-18 22:24:44.695][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-10-18 22:24:44.697][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-18 22:24:44.698][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:44.699][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-10-18 22:24:44.700][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-18 22:24:44.702][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:44.703][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:44.704][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-18 22:24:44.704][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-10-18 22:24:44.704][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-10-18 22:24:44.704][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-10-18 22:24:44.704][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-10-18 22:24:44.705][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-18 22:24:44.706][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:44.708][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:44.709][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-18 22:24:44.710][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:44.711][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:44.712][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-18 22:24:44.714][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:44.715][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-18 22:24:44.716][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-18 22:24:44.717][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:44.718][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:44.720][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-10-18 22:24:44.722][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:44.723][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-10-18 22:24:44.725][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:44.726][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-18 22:24:44.727][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:44.728][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-18 22:24:44.730][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:44.731][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-18 22:24:44.732][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-10-18 22:24:44.733][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-18 22:24:44.734][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:44.736][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-10-18 22:24:44.737][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-18 22:24:44.738][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:44.739][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:44.741][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:44.742][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-18 22:24:44.743][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:44.744][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:44.745][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-18 22:24:44.746][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:44.748][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:44.749][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-18 22:24:44.750][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:44.751][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-18 22:24:44.752][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-18 22:24:44.753][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:44.755][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:44.756][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-10-18 22:24:44.758][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:44.760][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-10-18 22:24:44.761][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:44.762][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-18 22:24:44.763][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:44.765][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-18 22:24:44.766][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:44.767][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-18 22:24:44.768][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-10-18 22:24:44.770][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-18 22:24:44.771][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:44.772][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-10-18 22:24:44.773][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-18 22:24:44.775][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:44.776][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:44.777][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:44.778][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-18 22:24:44.780][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:44.781][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:44.782][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-18 22:24:44.783][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:44.784][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:44.785][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-18 22:24:44.787][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:44.788][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-18 22:24:44.789][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-18 22:24:44.790][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:44.791][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:44.795][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-10-18 22:24:44.796][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.799][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:44.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:44.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.804][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:44.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:44.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.810][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:44.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:44.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:44.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:44.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:44.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:44.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:44.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:44.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.833][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:44.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:44.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.839][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:44.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:44.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.844][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:44.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:44.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.850][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:44.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:44.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.856][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:44.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:44.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:44.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:44.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.867][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:44.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:44.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:44.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:44.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.879][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:44.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:44.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.885][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:44.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:44.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.893][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:44.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:44.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:44.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:44.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:44.903][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-10-18 22:24:44.910][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-10-18 22:24:44.913][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-10-18 22:24:44.915][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-10-18 22:24:44.918][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-10-18 22:24:44.921][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-10-18 22:24:44.924][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-10-18 22:24:44.926][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-10-18 22:24:44.929][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-10-18 22:24:44.932][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-10-18 22:24:44.935][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-10-18 22:24:44.968][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-10-18 22:24:44.970][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-10-18 22:24:44.972][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-10-18 22:24:44.973][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-10-18 22:24:44.975][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-10-18 22:24:44.977][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-10-18 22:24:44.978][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-10-18 22:24:44.980][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-10-18 22:24:44.981][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-10-18 22:24:44.983][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-10-18 22:24:44.985][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-10-18 22:24:44.986][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-10-18 22:24:44.988][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-10-18 22:24:44.989][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-10-18 22:24:44.991][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-10-18 22:24:44.993][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-10-18 22:24:44.994][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-10-18 22:24:44.996][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-10-18 22:24:44.998][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-10-18 22:24:45.000][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-10-18 22:24:45.001][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-10-18 22:24:45.003][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-10-18 22:24:45.004][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-10-18 22:24:45.006][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-10-18 22:24:45.008][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-10-18 22:24:45.009][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-10-18 22:24:45.011][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-10-18 22:24:45.013][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-10-18 22:24:45.014][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-10-18 22:24:45.016][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-10-18 22:24:45.017][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-10-18 22:24:45.019][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-10-18 22:24:45.020][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-10-18 22:24:45.022][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-10-18 22:24:45.024][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-10-18 22:24:45.025][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-10-18 22:24:45.027][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-10-18 22:24:45.029][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-10-18 22:24:45.030][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-10-18 22:24:45.032][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-10-18 22:24:45.033][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-10-18 22:24:45.035][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-10-18 22:24:45.036][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-10-18 22:24:45.038][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-10-18 22:24:45.040][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-10-18 22:24:45.041][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-10-18 22:24:45.043][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-10-18 22:24:45.044][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-10-18 22:24:45.046][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-10-18 22:24:45.047][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-10-18 22:24:45.049][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-10-18 22:24:45.051][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-10-18 22:24:45.052][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-10-18 22:24:45.054][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-10-18 22:24:45.056][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-10-18 22:24:45.057][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-10-18 22:24:45.059][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-10-18 22:24:45.060][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-10-18 22:24:45.062][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-10-18 22:24:45.063][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-10-18 22:24:45.065][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-10-18 22:24:45.067][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-10-18 22:24:45.068][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-10-18 22:24:45.070][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-10-18 22:24:45.071][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-10-18 22:24:45.073][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-10-18 22:24:45.075][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-10-18 22:24:45.076][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-10-18 22:24:45.078][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-10-18 22:24:45.080][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-10-18 22:24:45.081][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-10-18 22:24:45.083][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-10-18 22:24:45.121][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-10-18 22:24:45.128][initialize] This is biodb version 1.4.2.
biodb.DEBUG[2022-10-18 22:24:45.134][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-10-18 22:24:45.136][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:45.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:45.139][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:45.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:45.149][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:45.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:45.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:45.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:45.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:45.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:45.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:45.160][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:45.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:45.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:45.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:45.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:45.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:45.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:45.171][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:45.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:45.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:45.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:45.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:45.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:45.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:45.182][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:45.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:45.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:45.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:45.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:45.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:45.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:45.189][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:45.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:45.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:45.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:45.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:45.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:45.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:45.197][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:45.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:45.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:45.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:45.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:45.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:45.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:45.205][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:45.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:45.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:45.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:45.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:45.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:45.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:45.213][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:45.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:45.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:45.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:45.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:45.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:45.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:45.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:45.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:45.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:45.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:45.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:45.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:45.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:45.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:45.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:45.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:45.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:45.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:45.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:45.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:45.242][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:45.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:45.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:45.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:45.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:45.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:45.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:45.253][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:45.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:45.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:45.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:45.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:45.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:45.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:45.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:45.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:45.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:45.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:45.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:45.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:45.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:45.277][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:45.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:45.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:45.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:45.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:45.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:45.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:45.285][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:45.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:45.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:45.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:45.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:45.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:45.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:45.297][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:45.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:45.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:45.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:45.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:45.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:45.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:45.307][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:45.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:45.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:45.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:45.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:45.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:45.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:45.320][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.15-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2022-10-18 22:24:45.329][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2022-10-18 22:24:45.332][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:45.333][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-10-18 22:24:45.334][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:45.335][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-18 22:24:45.337][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:45.338][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2022-10-18 22:24:45.339][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:45.340][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-18 22:24:45.342][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-10-18 22:24:45.343][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-18 22:24:45.344][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:45.346][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2022-10-18 22:24:45.348][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-18 22:24:45.349][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2022-10-18 22:24:45.349][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2022-10-18 22:24:45.349][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2022-10-18 22:24:45.349][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2022-10-18 22:24:45.349][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2022-10-18 22:24:45.349][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2022-10-18 22:24:45.349][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2022-10-18 22:24:45.349][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2022-10-18 22:24:45.349][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2022-10-18 22:24:45.349][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2022-10-18 22:24:45.349][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2022-10-18 22:24:45.349][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2022-10-18 22:24:45.349][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2022-10-18 22:24:45.349][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2022-10-18 22:24:45.349][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2022-10-18 22:24:45.349][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2022-10-18 22:24:45.349][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2022-10-18 22:24:45.351][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:45.353][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-18 22:24:45.353][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2022-10-18 22:24:45.354][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-10-18 22:24:45.356][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:45.357][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:45.359][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-18 22:24:45.360][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:45.361][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:45.362][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-18 22:24:45.363][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2022-10-18 22:24:45.363][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2022-10-18 22:24:45.365][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-18 22:24:45.366][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-18 22:24:45.367][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:45.369][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:45.375][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-10-18 22:24:45.378][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-10-18 22:24:45.381][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-10-18 22:24:45.383][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-10-18 22:24:45.409][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2022-10-18 22:24:45.411][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2022-10-18 22:24:45.417][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2022-10-18 22:24:45.422][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2022-10-18 22:24:45.429][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-18 22:24:45.431][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-18 22:24:45.433][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2022-10-18 22:24:45.435][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2022-10-18 22:24:45.436][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2022-10-18 22:24:45.436][self$setPropertyValue] Setting property "urls" to "F:/biocbuild/bbs-3.15-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2022-10-18 22:24:45.438][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-18 22:24:45.440][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-18 22:24:45.442][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2022-10-18 22:24:45.443][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2022-10-18 22:24:45.445][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2022-10-18 22:24:45.462][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2022-10-18 22:24:45.464][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-18 22:24:45.466][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-18 22:24:45.469][private$addConnectorRules] Create new rule for URL "F:/biocbuild/bbs-3.15-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2022-10-18 22:24:45.471][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-18 22:24:45.473][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2022-10-18 22:24:45.502][biodb::testThat]
biodb.INFO [2022-10-18 22:24:45.504][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2022-10-18 22:24:45.506][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-18 22:24:45.508][biodb::testThat]
biodb.TRACE[2022-10-18 22:24:45.524][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.15-bioc/R/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2022-10-18 22:24:45.530][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2022-10-18 22:24:45.534][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2022-10-18 22:24:45.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-18 22:24:45.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:45.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:45.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:45.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:45.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:45.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-18 22:24:45.567][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:45.569][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:45.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.581][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:45.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:45.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.603][ef$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:45.604][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:45.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.606][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.630][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:45.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:45.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.639][ef$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:45.641][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:45.642][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.643][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.645][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:45.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:45.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.653][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:45.655][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:45.656][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.657][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:45.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:45.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.667][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:45.669][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:45.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.671][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:45.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:45.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.681][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:45.683][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:45.684][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.685][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.687][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:45.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:45.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.695][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:45.697][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:45.698][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.699][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:45.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:45.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.710][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:45.711][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:45.712][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.713][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:45.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:45.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.724][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:45.725][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:45.727][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.728][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:45.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:45.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.740][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:45.742][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:45.743][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.744][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.745][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:45.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:45.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.754][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:45.755][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:45.757][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.758][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.759][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:45.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:45.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.769][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:45.771][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:45.772][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.773][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:45.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:45.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.788][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:45.790][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:45.791][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.792][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:45.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:45.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.803][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:45.805][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:45.806][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.807][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.809][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:45.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:45.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.818][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:45.820][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:45.821][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.822][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.824][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:45.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:45.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.833][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:45.835][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:45.836][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.837][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.839][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:45.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:45.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.850][ef$get] Asked field names are: super.class.
biodb.TRACE[2022-10-18 22:24:45.852][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:45.853][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.855][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.856][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2022-10-18 22:24:45.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:45.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:45.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:45.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:45.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:45.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:45.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:45.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.911][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:45.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:45.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.917][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:45.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:45.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.922][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:45.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:45.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.927][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:45.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:45.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.931][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:45.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:45.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.937][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:45.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:45.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:45.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:45.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:45.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:45.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:45.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:45.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:45.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:45.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:45.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:45.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:45.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:45.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:45.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:45.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:45.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:45.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:45.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:45.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:45.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:45.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:45.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:45.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:45.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:46.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:46.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:46.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:46.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:46.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:46.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:46.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:46.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:46.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.022][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:46.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:46.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.027][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:46.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:46.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.031][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:46.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:46.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.036][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:46.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:46.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.041][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:46.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:46.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.046][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:46.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:46.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.051][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:46.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:46.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:46.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:46.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:46.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:46.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:46.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:46.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:46.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:46.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:46.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:46.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.090][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:46.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:46.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.095][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:46.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:46.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.100][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:46.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:46.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:46.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:46.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:46.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:46.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:46.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:46.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:46.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:46.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.126][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:46.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:46.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.132][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:46.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:46.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:46.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:46.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.142][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:46.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:46.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.147][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:46.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:46.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.151][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:46.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:46.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.156][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:46.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:46.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.161][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:46.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:46.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.166][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-10-18 22:24:46.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:46.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:46.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:46.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:46.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:46.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:46.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:46.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.185][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-10-18 22:24:46.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:46.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.214][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:46.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:46.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.220][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:46.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:46.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.224][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:46.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:46.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.229][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:46.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:46.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.234][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:46.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:46.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.249][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:46.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:46.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.254][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:46.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:46.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:46.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:46.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.264][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:46.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:46.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:46.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:46.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:46.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:46.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:46.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:46.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:46.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:46.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:46.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:46.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:46.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:46.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-18 22:24:46.303][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2022-10-18 22:24:46.310][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-18 22:24:46.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-18 22:24:46.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.315][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-18 22:24:46.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-18 22:24:46.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.320][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-18 22:24:46.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-18 22:24:46.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.325][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-18 22:24:46.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-18 22:24:46.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:46.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:46.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.362][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:46.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:46.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:46.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:46.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:46.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:46.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:46.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:46.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:46.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:46.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:46.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:46.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:46.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:46.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.407][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:46.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:46.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.412][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:46.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:46.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.417][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:46.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:46.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:46.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:46.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:46.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:46.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:46.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:46.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.453][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:46.454][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:46.456][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.457][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:46.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:46.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:46.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:46.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:46.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:46.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:46.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:46.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.489][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:46.490][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:46.491][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.493][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:46.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:46.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:46.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:46.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:46.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:46.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.522][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:46.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:46.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.527][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:46.528][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:46.529][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.530][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:46.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:46.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:46.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:46.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:46.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:46.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:46.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:46.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.561][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:46.562][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:46.563][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.564][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:46.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:46.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.579][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:46.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:46.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.584][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:46.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:46.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.589][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:46.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:46.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.594][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:46.596][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:46.597][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.598][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.599][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:46.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:46.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:46.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:46.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:46.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:46.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.622][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:46.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:46.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.627][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:46.629][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:46.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.631][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.632][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:46.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:46.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.645][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:46.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:46.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.651][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:46.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:46.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.660][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:46.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:46.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.665][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:46.667][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:46.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.669][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.670][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:46.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:46.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.683][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:46.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:46.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.689][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:46.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:46.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.694][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:46.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:46.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.699][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:46.700][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:46.701][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.702][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.703][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:46.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:46.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.717][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:46.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:46.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.722][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:46.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:46.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.727][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:46.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:46.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.732][ef$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:46.733][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:46.734][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.735][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.737][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:46.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:46.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:46.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:46.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:46.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:46.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:46.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:46.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.766][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:46.767][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:46.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.769][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:46.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:46.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.784][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:46.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:46.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:46.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:46.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:46.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:46.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.799][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:46.800][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:46.801][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.803][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:46.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:46.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:46.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:46.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:46.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:46.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:46.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:46.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.832][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:46.834][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:46.835][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.836][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:46.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:46.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:46.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:46.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.856][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:46.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:46.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:46.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:46.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.865][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:46.867][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:46.868][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.874][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:46.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:46.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.890][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:46.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:46.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.897][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:46.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:46.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.902][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:46.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:46.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.908][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:46.910][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:46.912][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.914][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.916][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:46.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:46.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:46.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:46.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:46.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:46.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:46.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:46.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.949][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:46.950][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:46.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.952][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:46.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:46.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:46.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:46.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:46.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:46.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:46.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:46.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.984][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:46.986][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:46.987][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.988][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:46.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:46.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:46.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:46.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.004][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:47.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:47.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.009][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:47.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:47.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.017][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:47.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:47.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.025][ef$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:47.027][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:47.029][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.031][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.033][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:47.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:47.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.058][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:47.060][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:47.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.064][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.075][ef$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:47.078][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:47.080][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.082][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.094][ef$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:47.096][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:47.098][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.100][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.116][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:47.119][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:47.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.122][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.129][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:47.131][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:47.132][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.133][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.140][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:47.142][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:47.143][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.144][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.157][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:47.159][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:47.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.163][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.175][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:47.177][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:47.179][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.181][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.193][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:47.196][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:47.198][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.200][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.212][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:47.214][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:47.216][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.218][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.230][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:47.232][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:47.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.236][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.244][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:47.246][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:47.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.248][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.256][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:47.257][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:47.259][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.260][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.268][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:47.269][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:47.271][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.272][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.279][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:47.281][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:47.282][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.283][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.290][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:47.292][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:47.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.294][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.301][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:47.303][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:47.305][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.307][ef$get] fields variable is a list.
biodb.INFO [2022-10-18 22:24:47.316][biodb::testThat]
biodb.INFO [2022-10-18 22:24:47.317][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2022-10-18 22:24:47.319][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-18 22:24:47.320][biodb::testThat]
biodb.DEBUG[2022-10-18 22:24:47.333][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2022-10-18 22:24:47.340][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2022-10-18 22:24:47.346][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:47.348][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2022-10-18 22:24:47.351][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2022-10-18 22:24:47.353][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-18 22:24:47.369][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2022-10-18 22:24:47.371][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2022-10-18 22:24:47.448][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2022-10-18 22:24:47.451][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2022-10-18 22:24:47.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-18 22:24:47.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:47.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:47.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:47.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:47.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:47.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-18 22:24:47.483][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:47.485][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:47.487][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.489][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:47.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:47.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.506][ef$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:47.508][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:47.510][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.512][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.515][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:47.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:47.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.528][ef$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:47.530][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:47.531][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.532][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.534][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:47.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:47.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.543][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:47.544][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:47.546][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.548][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:47.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:47.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.563][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:47.565][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:47.567][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.569][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:47.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:47.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.583][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:47.585][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:47.587][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.589][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.591][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:47.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:47.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.605][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:47.607][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:47.609][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.611][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.613][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:47.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:47.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.627][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:47.629][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:47.631][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.632][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:47.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:47.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.648][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:47.650][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:47.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.653][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:47.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:47.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.668][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:47.671][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:47.672][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.674][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.676][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:47.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:47.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.689][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:47.691][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:47.693][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.695][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:47.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:47.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.710][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:47.713][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:47.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.716][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:47.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:47.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.731][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:47.734][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:47.735][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.737][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:47.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:47.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.761][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:47.763][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:47.765][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.767][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.769][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:47.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:47.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.782][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:47.784][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:47.786][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.787][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.790][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:47.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:47.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.803][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:47.805][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:47.807][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.808][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.811][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:47.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:47.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.824][ef$get] Asked field names are: super.class.
biodb.TRACE[2022-10-18 22:24:47.826][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:47.827][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.829][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.830][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2022-10-18 22:24:47.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:47.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:47.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:47.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:47.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:47.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:47.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:47.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.858][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:47.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:47.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.863][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:47.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:47.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.867][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:47.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:47.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.874][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:47.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:47.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.881][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:47.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:47.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.889][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:47.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:47.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:47.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:47.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:47.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:47.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:47.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:47.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:47.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:47.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:47.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:47.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:47.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:47.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:47.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:47.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:47.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:47.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:47.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:47.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:47.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:47.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:47.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:47.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:47.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:47.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:47.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:47.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:47.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:47.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:47.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:47.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.968][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:47.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:47.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.973][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:47.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:47.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.977][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:47.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:47.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:47.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:47.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.987][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:47.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:47.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:47.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:47.997][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:47.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:48.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:48.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:48.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:48.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:48.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:48.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:48.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:48.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:48.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:48.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:48.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:48.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:48.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.038][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:48.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:48.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.045][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:48.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:48.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.053][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:48.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:48.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:48.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:48.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:48.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:48.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:48.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:48.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.084][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:48.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:48.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.092][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:48.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:48.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.096][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:48.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:48.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.101][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:48.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:48.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:48.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:48.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:48.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:48.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:48.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:48.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.120][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:48.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:48.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.125][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:48.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:48.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.130][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-10-18 22:24:48.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:48.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.135][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:48.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:48.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:48.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:48.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:48.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:48.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.149][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-10-18 22:24:48.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:48.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.159][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:48.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:48.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.164][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:48.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:48.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.169][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:48.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:48.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.173][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:48.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:48.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.178][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:48.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:48.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.187][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:48.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:48.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.192][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:48.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:48.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:48.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:48.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.201][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:48.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:48.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:48.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:48.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:48.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:48.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:48.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:48.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:48.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:48.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:48.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:48.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:48.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:48.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-18 22:24:48.246][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2022-10-18 22:24:48.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-10-18 22:24:48.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-10-18 22:24:48.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-10-18 22:24:48.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-10-18 22:24:48.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-10-18 22:24:48.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-10-18 22:24:48.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-18 22:24:48.276][biodb::testThat]
biodb.INFO [2022-10-18 22:24:48.278][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2022-10-18 22:24:48.280][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-18 22:24:48.282][biodb::testThat]
biodb.TRACE[2022-10-18 22:24:48.287][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:48.289][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:48.291][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.293][ef$get] fields variable is a list.
biodb.DEBUG[2022-10-18 22:24:48.295][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2022-10-18 22:24:48.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:48.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:48.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.340][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:48.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:48.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.345][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:48.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:48.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-18 22:24:48.352][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2022-10-18 22:24:48.364][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2022-10-18 22:24:48.366][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2022-10-18 22:24:48.367][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2022-10-18 22:24:48.369][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:48.372][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:48.374][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2022-10-18 22:24:48.377][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:48.379][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2022-10-18 22:24:48.385][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2022-10-18 22:24:48.387][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2022-10-18 22:24:48.388][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2022-10-18 22:24:48.390][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2022-10-18 22:24:48.391][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2022-10-18 22:24:48.392][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2022-10-18 22:24:48.394][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:48.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:48.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:48.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:48.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:48.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:48.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.410][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:48.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:48.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-18 22:24:48.415][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2022-10-18 22:24:48.416][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2022-10-18 22:24:48.418][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2022-10-18 22:24:48.436][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:48.438][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:48.439][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.440][ef$get] fields variable is a list.
biodb.DEBUG[2022-10-18 22:24:48.442][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2022-10-18 22:24:48.466][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:48.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:48.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.471][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:48.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:48.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.476][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:48.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:48.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-18 22:24:48.483][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2022-10-18 22:24:48.540][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2022-10-18 22:24:48.542][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2022-10-18 22:24:48.543][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2022-10-18 22:24:48.555][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:48.558][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:48.559][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2022-10-18 22:24:48.561][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:48.562][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2022-10-18 22:24:48.584][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2022-10-18 22:24:48.586][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2022-10-18 22:24:48.588][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2022-10-18 22:24:48.591][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2022-10-18 22:24:48.593][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2022-10-18 22:24:48.595][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2022-10-18 22:24:48.598][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:48.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:48.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.606][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:48.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:48.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.614][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:48.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:48.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.630][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:48.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:48.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-18 22:24:48.638][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2022-10-18 22:24:48.640][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2022-10-18 22:24:48.642][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2022-10-18 22:24:48.674][biodb::testThat]
biodb.INFO [2022-10-18 22:24:48.676][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2022-10-18 22:24:48.678][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-18 22:24:48.680][biodb::testThat]
biodb.TRACE[2022-10-18 22:24:48.716][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:48.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:48.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:48.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:48.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.733][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:48.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:48.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-18 22:24:48.775][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2022-10-18 22:24:48.777][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2022-10-18 22:24:48.780][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2022-10-18 22:24:48.783][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:48.786][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:48.789][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2022-10-18 22:24:48.792][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:48.793][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2022-10-18 22:24:48.802][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2022-10-18 22:24:48.804][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2022-10-18 22:24:48.806][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2022-10-18 22:24:48.808][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2022-10-18 22:24:48.811][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2022-10-18 22:24:48.812][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2022-10-18 22:24:48.816][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:48.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:48.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.824][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:48.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:48.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.831][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:48.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:48.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:48.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:48.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-18 22:24:48.847][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2022-10-18 22:24:48.848][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2022-10-18 22:24:48.879][biodb::testThat]
biodb.INFO [2022-10-18 22:24:48.881][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2022-10-18 22:24:48.883][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-18 22:24:48.885][biodb::testThat]
biodb.TRACE[2022-10-18 22:24:48.930][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-18 22:24:48.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-18 22:24:48.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.938][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-18 22:24:48.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-18 22:24:48.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.954][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-18 22:24:48.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-18 22:24:48.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:48.962][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-18 22:24:48.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-18 22:24:48.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:48.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:49.022][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-18 22:24:49.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-18 22:24:49.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:49.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:49.027][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-18 22:24:49.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-18 22:24:49.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:49.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:49.032][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-18 22:24:49.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-18 22:24:49.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:49.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:49.037][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-18 22:24:49.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-18 22:24:49.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:49.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-18 22:24:49.046][biodb::testThat]
biodb.INFO [2022-10-18 22:24:49.047][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2022-10-18 22:24:49.048][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-18 22:24:49.049][biodb::testThat]
biodb.INFO [2022-10-18 22:24:49.056][biodb::testThat]
biodb.INFO [2022-10-18 22:24:49.058][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2022-10-18 22:24:49.059][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-18 22:24:49.061][biodb::testThat]
biodb.INFO [2022-10-18 22:24:49.070][biodb::testThat]
biodb.INFO [2022-10-18 22:24:49.071][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2022-10-18 22:24:49.072][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-18 22:24:49.074][biodb::testThat]
biodb.DEBUG[2022-10-18 22:24:49.078][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2022-10-18 22:24:49.531][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2022-10-18 22:24:50.253][biodb::testThat]
biodb.INFO [2022-10-18 22:24:50.256][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2022-10-18 22:24:50.258][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-18 22:24:50.260][biodb::testThat]
biodb.DEBUG[2022-10-18 22:24:50.473][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2022-10-18 22:24:50.621][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:50.623][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:50.625][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:50.627][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:50.629][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:50.630][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:50.632][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:50.634][ef$get] fields variable is a list.
biodb.INFO [2022-10-18 22:24:50.637][biodb::testThat]
biodb.INFO [2022-10-18 22:24:50.639][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2022-10-18 22:24:50.640][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-18 22:24:50.642][biodb::testThat]
biodb.DEBUG[2022-10-18 22:24:50.646][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2022-10-18 22:24:50.717][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2022-10-18 22:24:50.721][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:50.724][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2022-10-18 22:24:50.747][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2022-10-18 22:24:50.750][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-18 22:24:50.752][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-18 22:24:50.755][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2022-10-18 22:24:50.760][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:50.780][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2022-10-18 22:24:50.782][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2022-10-18 22:24:50.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-18 22:24:50.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:50.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:50.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:50.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:50.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:50.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-18 22:24:50.801][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:50.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:50.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:50.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:50.806][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:50.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:50.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:50.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:50.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:50.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:50.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:50.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:50.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:50.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:50.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:50.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:50.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:50.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:50.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:50.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:50.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:50.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:50.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:50.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:50.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:50.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:50.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:50.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:50.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:50.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:50.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:50.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-18 22:24:50.841][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2022-10-18 22:24:50.843][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2022-10-18 22:24:50.864][biodb::testThat]
biodb.INFO [2022-10-18 22:24:50.866][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2022-10-18 22:24:50.867][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-18 22:24:50.868][biodb::testThat]
biodb.DEBUG[2022-10-18 22:24:50.877][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2022-10-18 22:24:50.879][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2022-10-18 22:24:50.881][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2022-10-18 22:24:50.883][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:50.885][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2022-10-18 22:24:50.888][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2022-10-18 22:24:50.890][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-18 22:24:50.891][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-18 22:24:50.893][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2022-10-18 22:24:50.895][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:50.912][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2022-10-18 22:24:50.914][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2022-10-18 22:24:50.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-18 22:24:50.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:50.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:50.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:50.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:50.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:50.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-18 22:24:50.931][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:50.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:50.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:50.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:50.936][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:50.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:50.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:50.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:50.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:50.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:50.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:50.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:50.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:50.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:50.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:50.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:50.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:50.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:50.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:50.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:50.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:50.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:50.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:50.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:50.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:50.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:50.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:50.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:50.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:50.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:50.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:50.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-18 22:24:50.971][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2022-10-18 22:24:50.972][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2022-10-18 22:24:50.974][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2022-10-18 22:24:50.992][biodb::testThat]
biodb.INFO [2022-10-18 22:24:50.993][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2022-10-18 22:24:50.994][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-18 22:24:50.996][biodb::testThat]
biodb.INFO [2022-10-18 22:24:51.018][biodb::testThat]
biodb.INFO [2022-10-18 22:24:51.019][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2022-10-18 22:24:51.021][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-18 22:24:51.022][biodb::testThat]
biodb.DEBUG[2022-10-18 22:24:51.025][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:51.027][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:51.029][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2022-10-18 22:24:51.031][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:51.038][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2022-10-18 22:24:51.043][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2022-10-18 22:24:51.045][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2022-10-18 22:24:51.046][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2022-10-18 22:24:51.048][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2022-10-18 22:24:51.056][biodb::testThat]
biodb.INFO [2022-10-18 22:24:51.058][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2022-10-18 22:24:51.060][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-18 22:24:51.061][biodb::testThat]
biodb.DEBUG[2022-10-18 22:24:51.066][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:51.069][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:51.072][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2022-10-18 22:24:51.075][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:51.077][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2022-10-18 22:24:51.085][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2022-10-18 22:24:51.087][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2022-10-18 22:24:51.090][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2022-10-18 22:24:51.092][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2022-10-18 22:24:51.116][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:51.119][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:51.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:51.123][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:51.125][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:51.127][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:51.128][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:51.130][ef$get] fields variable is a list.
biodb.INFO [2022-10-18 22:24:51.132][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-10-18 22:24:51.134][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2022-10-18 22:24:51.147][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2022-10-18 22:24:51.150][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-10-18 22:24:51.152][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:51.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:51.155][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.159][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-10-18 22:24:51.201][biodb::testContext]
biodb.INFO [2022-10-18 22:24:51.203][biodb::testContext] ********************************************************************************
biodb.INFO [2022-10-18 22:24:51.204][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2022-10-18 22:24:51.206][biodb::testContext] ********************************************************************************
biodb.INFO [2022-10-18 22:24:51.207][biodb::testContext]
biodb.INFO [2022-10-18 22:24:51.216][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.4.2.
biodb.DEBUG[2022-10-18 22:24:51.218][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.15-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-10-18 22:24:51.223][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-10-18 22:24:51.225][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-10-18 22:24:51.226][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-10-18 22:24:51.227][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.230][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-10-18 22:24:51.232][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-10-18 22:24:51.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.236][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-10-18 22:24:51.238][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-10-18 22:24:51.239][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.242][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-10-18 22:24:51.243][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-10-18 22:24:51.245][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-10-18 22:24:51.246][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.249][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-10-18 22:24:51.250][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-10-18 22:24:51.251][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-10-18 22:24:51.252][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.256][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-10-18 22:24:51.257][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-10-18 22:24:51.258][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.262][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-10-18 22:24:51.263][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-10-18 22:24:51.264][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-10-18 22:24:51.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.269][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-10-18 22:24:51.270][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-10-18 22:24:51.271][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.274][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-10-18 22:24:51.276][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-10-18 22:24:51.277][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-10-18 22:24:51.278][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.281][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-10-18 22:24:51.283][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-10-18 22:24:51.284][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-10-18 22:24:51.285][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-10-18 22:24:51.319][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-10-18 22:24:51.321][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-10-18 22:24:51.322][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.326][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-10-18 22:24:51.327][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-10-18 22:24:51.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.332][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-10-18 22:24:51.334][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-10-18 22:24:51.335][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.338][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-10-18 22:24:51.340][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-10-18 22:24:51.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.344][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-10-18 22:24:51.345][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-10-18 22:24:51.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.350][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-10-18 22:24:51.351][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-10-18 22:24:51.352][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.356][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-10-18 22:24:51.357][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-10-18 22:24:51.361][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-10-18 22:24:51.362][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.365][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-10-18 22:24:51.367][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-10-18 22:24:51.368][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-10-18 22:24:51.369][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.373][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-10-18 22:24:51.375][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:51.376][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-10-18 22:24:51.377][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:51.378][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-18 22:24:51.380][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:51.381][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-18 22:24:51.383][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:51.384][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-18 22:24:51.385][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-10-18 22:24:51.386][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-18 22:24:51.388][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:51.389][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-10-18 22:24:51.390][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-18 22:24:51.391][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:51.392][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:51.394][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-18 22:24:51.394][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-10-18 22:24:51.394][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-10-18 22:24:51.394][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-10-18 22:24:51.394][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-10-18 22:24:51.395][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-18 22:24:51.396][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:51.397][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:51.399][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-18 22:24:51.400][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:51.401][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:51.402][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-18 22:24:51.403][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:51.404][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-18 22:24:51.405][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-18 22:24:51.407][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:51.408][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:51.409][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-10-18 22:24:51.411][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:51.413][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-10-18 22:24:51.414][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:51.415][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-18 22:24:51.416][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:51.417][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-18 22:24:51.419][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:51.420][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-18 22:24:51.421][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-10-18 22:24:51.422][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-18 22:24:51.423][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:51.425][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-10-18 22:24:51.426][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-18 22:24:51.428][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:51.429][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:51.430][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-18 22:24:51.430][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-10-18 22:24:51.430][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-10-18 22:24:51.430][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-10-18 22:24:51.430][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-10-18 22:24:51.431][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-18 22:24:51.433][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:51.434][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:51.435][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-18 22:24:51.436][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:51.437][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:51.438][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-18 22:24:51.440][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:51.441][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-18 22:24:51.442][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-18 22:24:51.443][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:51.444][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:51.446][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-10-18 22:24:51.448][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:51.449][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-10-18 22:24:51.450][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:51.451][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-18 22:24:51.453][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:51.454][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-18 22:24:51.455][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:51.456][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-18 22:24:51.458][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-10-18 22:24:51.459][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-18 22:24:51.460][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:51.461][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-10-18 22:24:51.463][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-18 22:24:51.464][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:51.465][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:51.466][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:51.468][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-18 22:24:51.469][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:51.470][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:51.471][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-18 22:24:51.472][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:51.473][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:51.475][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-18 22:24:51.476][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:51.477][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-18 22:24:51.478][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-18 22:24:51.479][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:51.480][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:51.482][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-10-18 22:24:51.484][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:51.485][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-10-18 22:24:51.486][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:51.493][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-18 22:24:51.495][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:51.496][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-18 22:24:51.498][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:51.499][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-18 22:24:51.500][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-10-18 22:24:51.501][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-18 22:24:51.503][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:51.504][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-10-18 22:24:51.505][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-18 22:24:51.506][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:51.508][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:51.509][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:51.510][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-18 22:24:51.511][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:51.512][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:51.514][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-18 22:24:51.515][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:51.516][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:51.517][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-18 22:24:51.518][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:51.520][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-18 22:24:51.521][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-18 22:24:51.522][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:51.523][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:51.525][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-10-18 22:24:51.526][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.534][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.557][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.563][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.568][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.585][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.597][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.602][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.609][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.615][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.626][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-10-18 22:24:51.627][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-10-18 22:24:51.629][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-10-18 22:24:51.631][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-10-18 22:24:51.632][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-10-18 22:24:51.634][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-10-18 22:24:51.636][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-10-18 22:24:51.638][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-10-18 22:24:51.639][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-10-18 22:24:51.641][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-10-18 22:24:51.643][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-10-18 22:24:51.644][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-10-18 22:24:51.646][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-10-18 22:24:51.647][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-10-18 22:24:51.649][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-10-18 22:24:51.651][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-10-18 22:24:51.652][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-10-18 22:24:51.654][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-10-18 22:24:51.655][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-10-18 22:24:51.657][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-10-18 22:24:51.664][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-10-18 22:24:51.666][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-10-18 22:24:51.668][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-10-18 22:24:51.670][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-10-18 22:24:51.672][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-10-18 22:24:51.673][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-10-18 22:24:51.675][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-10-18 22:24:51.676][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-10-18 22:24:51.678][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-10-18 22:24:51.680][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-10-18 22:24:51.681][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-10-18 22:24:51.683][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-10-18 22:24:51.684][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-10-18 22:24:51.686][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-10-18 22:24:51.688][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-10-18 22:24:51.689][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-10-18 22:24:51.691][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-10-18 22:24:51.692][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-10-18 22:24:51.694][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-10-18 22:24:51.696][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-10-18 22:24:51.697][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-10-18 22:24:51.699][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-10-18 22:24:51.701][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-10-18 22:24:51.702][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-10-18 22:24:51.704][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-10-18 22:24:51.705][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-10-18 22:24:51.707][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-10-18 22:24:51.708][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-10-18 22:24:51.710][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-10-18 22:24:51.712][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-10-18 22:24:51.713][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-10-18 22:24:51.715][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-10-18 22:24:51.716][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-10-18 22:24:51.718][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-10-18 22:24:51.720][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-10-18 22:24:51.721][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-10-18 22:24:51.723][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-10-18 22:24:51.724][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-10-18 22:24:51.726][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-10-18 22:24:51.728][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-10-18 22:24:51.729][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-10-18 22:24:51.731][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-10-18 22:24:51.732][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-10-18 22:24:51.734][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-10-18 22:24:51.736][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-10-18 22:24:51.737][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-10-18 22:24:51.739][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-10-18 22:24:51.740][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-10-18 22:24:51.742][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-10-18 22:24:51.744][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-10-18 22:24:51.745][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-10-18 22:24:51.747][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-10-18 22:24:51.749][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-10-18 22:24:51.750][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-10-18 22:24:51.752][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-10-18 22:24:51.753][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-10-18 22:24:51.755][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-10-18 22:24:51.756][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-10-18 22:24:51.758][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-10-18 22:24:51.760][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-10-18 22:24:51.762][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-10-18 22:24:51.763][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-10-18 22:24:51.765][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-10-18 22:24:51.766][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-10-18 22:24:51.769][initialize] This is biodb version 1.4.2.
biodb.DEBUG[2022-10-18 22:24:51.770][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-10-18 22:24:51.771][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.773][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.776][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:51.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:51.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:51.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:51.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.791][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:51.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:51.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.799][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:51.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:51.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.807][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:51.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:51.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:51.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:51.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:51.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:51.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:51.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:51.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:51.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:51.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:51.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:51.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:51.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:51.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.868][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:51.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:51.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:51.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:51.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.884][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:51.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:51.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:51.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:51.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.899][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:51.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:51.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.911][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:51.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:51.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:51.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:51.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:51.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:51.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:51.924][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.15-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2022-10-18 22:24:51.927][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2022-10-18 22:24:51.930][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:51.932][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-10-18 22:24:51.934][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:51.936][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-18 22:24:51.938][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:51.940][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2022-10-18 22:24:51.941][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:51.943][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-18 22:24:51.945][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-10-18 22:24:51.947][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-18 22:24:51.949][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:51.950][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2022-10-18 22:24:51.952][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-18 22:24:51.954][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2022-10-18 22:24:51.954][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2022-10-18 22:24:51.954][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2022-10-18 22:24:51.954][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2022-10-18 22:24:51.954][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2022-10-18 22:24:51.954][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2022-10-18 22:24:51.954][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2022-10-18 22:24:51.954][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2022-10-18 22:24:51.954][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2022-10-18 22:24:51.954][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2022-10-18 22:24:51.954][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2022-10-18 22:24:51.954][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2022-10-18 22:24:51.954][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2022-10-18 22:24:51.954][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2022-10-18 22:24:51.954][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2022-10-18 22:24:51.954][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2022-10-18 22:24:51.954][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2022-10-18 22:24:51.956][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:51.958][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-18 22:24:51.958][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2022-10-18 22:24:51.960][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-10-18 22:24:51.962][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:51.964][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:51.965][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-18 22:24:51.967][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:51.969][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:51.971][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-18 22:24:51.972][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2022-10-18 22:24:51.972][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2022-10-18 22:24:51.974][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-18 22:24:51.976][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-18 22:24:51.978][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:51.980][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:51.982][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-10-18 22:24:51.985][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-10-18 22:24:51.987][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-10-18 22:24:51.990][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-10-18 22:24:51.996][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2022-10-18 22:24:51.998][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2022-10-18 22:24:52.000][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2022-10-18 22:24:52.003][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2022-10-18 22:24:52.005][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-18 22:24:52.007][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-18 22:24:52.010][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2022-10-18 22:24:52.012][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2022-10-18 22:24:52.014][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2022-10-18 22:24:52.014][self$setPropertyValue] Setting property "urls" to "F:/biocbuild/bbs-3.15-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2022-10-18 22:24:52.016][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-18 22:24:52.017][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-18 22:24:52.019][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2022-10-18 22:24:52.021][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2022-10-18 22:24:52.023][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2022-10-18 22:24:52.026][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2022-10-18 22:24:52.029][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-18 22:24:52.031][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-18 22:24:52.034][private$addConnectorRules] Create new rule for URL "F:/biocbuild/bbs-3.15-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2022-10-18 22:24:52.044][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-18 22:24:52.047][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2022-10-18 22:24:52.050][biodb::testThat]
biodb.INFO [2022-10-18 22:24:52.053][biodb::testThat] Running test function test.hmdbmetabolite.nbentries (" HMDB metabolite returns enough entries. ").
biodb.INFO [2022-10-18 22:24:52.054][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-18 22:24:52.056][biodb::testThat]
biodb.DEBUG[2022-10-18 22:24:52.065][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:52.068][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:52.071][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2022-10-18 22:24:52.074][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:52.076][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2022-10-18 22:24:52.082][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2022-10-18 22:24:52.083][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2022-10-18 22:24:52.084][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2022-10-18 22:24:52.086][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2022-10-18 22:24:52.089][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2022-10-18 22:24:52.092][biodb::testThat]
biodb.INFO [2022-10-18 22:24:52.094][biodb::testThat] Running test function test.old.accession (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2022-10-18 22:24:52.095][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-18 22:24:52.096][biodb::testThat]
biodb.DEBUG[2022-10-18 22:24:52.099][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2022-10-18 22:24:52.100][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2022-10-18 22:24:52.103][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:52.105][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2022-10-18 22:24:52.109][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2022-10-18 22:24:52.111][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-18 22:24:52.127][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2022-10-18 22:24:52.129][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2022-10-18 22:24:52.145][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2022-10-18 22:24:52.146][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2022-10-18 22:24:52.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-18 22:24:52.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:52.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:52.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:52.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:52.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:52.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-18 22:24:52.166][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:52.168][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:52.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.170][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:52.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:52.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.180][ef$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:52.182][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:52.184][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.185][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.186][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:52.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:52.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.195][ef$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:52.197][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:52.198][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.200][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.201][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:52.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:52.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.214][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:52.216][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:52.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.218][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:52.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:52.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.233][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:52.235][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:52.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.239][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:52.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:52.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.251][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:52.252][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:52.253][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.254][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.256][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:52.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:52.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.265][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:52.272][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:52.274][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.275][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:52.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:52.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.286][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:52.287][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:52.288][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.289][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:52.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:52.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.300][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:52.302][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:52.303][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.304][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:52.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:52.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.315][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:52.316][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:52.317][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.318][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.320][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:52.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:52.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.329][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:52.331][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:52.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.334][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:52.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:52.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.345][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:52.346][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:52.347][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.348][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:52.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:52.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.359][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:52.361][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:52.362][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.363][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:52.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:52.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.374][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:52.375][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:52.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.378][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.379][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:52.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:52.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.388][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:52.389][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:52.391][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.392][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.393][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:52.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:52.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.402][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:52.404][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:52.406][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.407][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.410][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:52.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:52.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.420][ef$get] Asked field names are: super.class.
biodb.TRACE[2022-10-18 22:24:52.421][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:52.422][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.423][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.425][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2022-10-18 22:24:52.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:52.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:52.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:52.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:52.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:52.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:52.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:52.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.450][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:52.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:52.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.461][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:52.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:52.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.467][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:52.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:52.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.473][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:52.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:52.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.477][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:52.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:52.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.483][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:52.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:52.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:52.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:52.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:52.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:52.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:52.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:52.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:52.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:52.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:52.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:52.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:52.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:52.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:52.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:52.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:52.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:52.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:52.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:52.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:52.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:52.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:52.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:52.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:52.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:52.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:52.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:52.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:52.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:52.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:52.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:52.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.563][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:52.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:52.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.568][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:52.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:52.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.573][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:52.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:52.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.579][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:52.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:52.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.584][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:52.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:52.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.590][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:52.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:52.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:52.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:52.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:52.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:52.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:52.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:52.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:52.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:52.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:52.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:52.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:52.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:52.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.648][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:52.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:52.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.663][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:52.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:52.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.670][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:52.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:52.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:52.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:52.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:52.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:52.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:52.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:52.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.691][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:52.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:52.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.699][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:52.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:52.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.704][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:52.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:52.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.709][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:52.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:52.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:52.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:52.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:52.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:52.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.725][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:52.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:52.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.730][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:52.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:52.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.735][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:52.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:52.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.740][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-10-18 22:24:52.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:52.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:52.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:52.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:52.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:52.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:52.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:52.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.763][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-10-18 22:24:52.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:52.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.773][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:52.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:52.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.778][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:52.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:52.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.783][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:52.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:52.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.790][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:52.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:52.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.797][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:52.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:52.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.811][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:52.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:52.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.819][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:52.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:52.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:52.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:52.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.833][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:52.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:52.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:52.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:52.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:52.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:52.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:52.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:52.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:52.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:52.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:52.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:52.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:52.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:52.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-18 22:24:52.882][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2022-10-18 22:24:52.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:52.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:52.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:52.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:52.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:52.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:52.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:52.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:52.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-18 22:24:52.904][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-10-18 22:24:52.905][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2022-10-18 22:24:52.907][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2022-10-18 22:24:52.908][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-10-18 22:24:52.909][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:52.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:52.911][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:52.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:52.913][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:52.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-10-18 22:24:52.921][biodb::testContext]
biodb.INFO [2022-10-18 22:24:52.923][biodb::testContext] ********************************************************************************
biodb.INFO [2022-10-18 22:24:52.924][biodb::testContext] Test context - Test search of entries
biodb.INFO [2022-10-18 22:24:52.925][biodb::testContext] ********************************************************************************
biodb.INFO [2022-10-18 22:24:52.926][biodb::testContext]
biodb.INFO [2022-10-18 22:24:52.935][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.4.2.
biodb.DEBUG[2022-10-18 22:24:52.938][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.15-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-10-18 22:24:52.943][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-10-18 22:24:52.944][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-10-18 22:24:52.946][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-10-18 22:24:52.947][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:52.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:52.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:52.951][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-10-18 22:24:52.952][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-10-18 22:24:52.953][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:52.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:52.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:52.956][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-10-18 22:24:52.958][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-10-18 22:24:52.959][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:52.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:52.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:52.962][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-10-18 22:24:52.963][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-10-18 22:24:52.965][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-10-18 22:24:52.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:52.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:52.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:52.969][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-10-18 22:24:52.970][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-10-18 22:24:52.972][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-10-18 22:24:52.973][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:52.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:52.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:52.976][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-10-18 22:24:52.977][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-10-18 22:24:52.978][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:52.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:52.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:52.983][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-10-18 22:24:52.985][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-10-18 22:24:52.987][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-10-18 22:24:52.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:52.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:52.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:52.994][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-10-18 22:24:52.996][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-10-18 22:24:52.997][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:52.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.004][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-10-18 22:24:53.006][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-10-18 22:24:53.008][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-10-18 22:24:53.010][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.015][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-10-18 22:24:53.017][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-10-18 22:24:53.019][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-10-18 22:24:53.021][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-10-18 22:24:53.023][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-10-18 22:24:53.025][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-10-18 22:24:53.026][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.032][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-10-18 22:24:53.034][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-10-18 22:24:53.035][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.040][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-10-18 22:24:53.042][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-10-18 22:24:53.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.049][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-10-18 22:24:53.051][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-10-18 22:24:53.053][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.058][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-10-18 22:24:53.060][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-10-18 22:24:53.062][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.067][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-10-18 22:24:53.068][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-10-18 22:24:53.070][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.074][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-10-18 22:24:53.084][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-10-18 22:24:53.090][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-10-18 22:24:53.092][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.097][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-10-18 22:24:53.098][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-10-18 22:24:53.099][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-10-18 22:24:53.101][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.105][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-10-18 22:24:53.107][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:53.109][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-10-18 22:24:53.110][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:53.112][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-18 22:24:53.114][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:53.115][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-18 22:24:53.117][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:53.118][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-18 22:24:53.120][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-10-18 22:24:53.121][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-18 22:24:53.123][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:53.125][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-10-18 22:24:53.126][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-18 22:24:53.128][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:53.129][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:53.131][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-18 22:24:53.131][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-10-18 22:24:53.131][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-10-18 22:24:53.131][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-10-18 22:24:53.131][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-10-18 22:24:53.132][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-18 22:24:53.134][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:53.135][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:53.137][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-18 22:24:53.139][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:53.140][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:53.141][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-18 22:24:53.143][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:53.144][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-18 22:24:53.146][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-18 22:24:53.147][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:53.149][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:53.151][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-10-18 22:24:53.154][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:53.156][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-10-18 22:24:53.158][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:53.159][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-18 22:24:53.161][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:53.162][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-18 22:24:53.164][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:53.165][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-18 22:24:53.167][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-10-18 22:24:53.169][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-18 22:24:53.170][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:53.172][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-10-18 22:24:53.173][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-18 22:24:53.175][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:53.177][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:53.178][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-18 22:24:53.178][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-10-18 22:24:53.178][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-10-18 22:24:53.178][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-10-18 22:24:53.178][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-10-18 22:24:53.180][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-18 22:24:53.181][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:53.183][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:53.185][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-18 22:24:53.186][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:53.188][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:53.189][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-18 22:24:53.191][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:53.192][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-18 22:24:53.194][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-18 22:24:53.195][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:53.197][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:53.199][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-10-18 22:24:53.201][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:53.203][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-10-18 22:24:53.204][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:53.206][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-18 22:24:53.207][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:53.209][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-18 22:24:53.211][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:53.212][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-18 22:24:53.214][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-10-18 22:24:53.216][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-18 22:24:53.217][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:53.219][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-10-18 22:24:53.221][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-18 22:24:53.222][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:53.224][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:53.226][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:53.227][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-18 22:24:53.229][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:53.231][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:53.232][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-18 22:24:53.234][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:53.235][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:53.237][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-18 22:24:53.238][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:53.240][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-18 22:24:53.241][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-18 22:24:53.243][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:53.244][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:53.246][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-10-18 22:24:53.249][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:53.250][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-10-18 22:24:53.252][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:53.254][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-18 22:24:53.256][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:53.258][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-18 22:24:53.259][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:53.261][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-18 22:24:53.262][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-10-18 22:24:53.264][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-18 22:24:53.265][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:53.267][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-10-18 22:24:53.269][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-18 22:24:53.270][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:53.272][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:53.273][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:53.275][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-18 22:24:53.276][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:53.277][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:53.279][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-18 22:24:53.281][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:53.282][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:53.284][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-18 22:24:53.285][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:53.287][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-18 22:24:53.288][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-18 22:24:53.290][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:53.291][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:53.293][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-10-18 22:24:53.302][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.313][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.320][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.327][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.333][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.362][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.368][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.374][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.380][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.398][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.410][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-10-18 22:24:53.411][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-10-18 22:24:53.413][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-10-18 22:24:53.415][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-10-18 22:24:53.416][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-10-18 22:24:53.418][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-10-18 22:24:53.420][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-10-18 22:24:53.422][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-10-18 22:24:53.424][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-10-18 22:24:53.425][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-10-18 22:24:53.427][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-10-18 22:24:53.428][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-10-18 22:24:53.431][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-10-18 22:24:53.432][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-10-18 22:24:53.434][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-10-18 22:24:53.436][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-10-18 22:24:53.438][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-10-18 22:24:53.439][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-10-18 22:24:53.441][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-10-18 22:24:53.442][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-10-18 22:24:53.444][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-10-18 22:24:53.446][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-10-18 22:24:53.447][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-10-18 22:24:53.449][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-10-18 22:24:53.451][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-10-18 22:24:53.452][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-10-18 22:24:53.454][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-10-18 22:24:53.455][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-10-18 22:24:53.457][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-10-18 22:24:53.459][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-10-18 22:24:53.460][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-10-18 22:24:53.462][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-10-18 22:24:53.463][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-10-18 22:24:53.465][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-10-18 22:24:53.467][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-10-18 22:24:53.468][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-10-18 22:24:53.476][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-10-18 22:24:53.478][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-10-18 22:24:53.480][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-10-18 22:24:53.482][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-10-18 22:24:53.483][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-10-18 22:24:53.485][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-10-18 22:24:53.487][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-10-18 22:24:53.489][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-10-18 22:24:53.490][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-10-18 22:24:53.492][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-10-18 22:24:53.494][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-10-18 22:24:53.495][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-10-18 22:24:53.497][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-10-18 22:24:53.498][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-10-18 22:24:53.500][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-10-18 22:24:53.502][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-10-18 22:24:53.503][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-10-18 22:24:53.505][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-10-18 22:24:53.507][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-10-18 22:24:53.508][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-10-18 22:24:53.510][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-10-18 22:24:53.512][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-10-18 22:24:53.513][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-10-18 22:24:53.515][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-10-18 22:24:53.517][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-10-18 22:24:53.518][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-10-18 22:24:53.520][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-10-18 22:24:53.522][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-10-18 22:24:53.523][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-10-18 22:24:53.525][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-10-18 22:24:53.527][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-10-18 22:24:53.528][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-10-18 22:24:53.530][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-10-18 22:24:53.531][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-10-18 22:24:53.533][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-10-18 22:24:53.535][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-10-18 22:24:53.536][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-10-18 22:24:53.538][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-10-18 22:24:53.539][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-10-18 22:24:53.541][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-10-18 22:24:53.543][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-10-18 22:24:53.544][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-10-18 22:24:53.546][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-10-18 22:24:53.547][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-10-18 22:24:53.549][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-10-18 22:24:53.551][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-10-18 22:24:53.552][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-10-18 22:24:53.554][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-10-18 22:24:53.556][initialize] This is biodb version 1.4.2.
biodb.DEBUG[2022-10-18 22:24:53.558][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-10-18 22:24:53.559][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.561][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.563][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:53.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:53.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:53.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:53.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.579][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:53.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:53.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:53.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:53.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.595][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:53.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:53.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:53.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:53.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:53.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:53.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:53.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:53.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:53.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:53.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:53.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:53.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.651][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:53.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:53.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.661][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:53.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:53.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:53.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:53.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:53.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:53.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.687][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:53.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:53.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.695][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:53.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:53.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.702][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-18 22:24:53.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:53.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:53.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:53.712][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.15-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2022-10-18 22:24:53.714][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2022-10-18 22:24:53.716][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:53.717][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-10-18 22:24:53.718][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:53.719][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-18 22:24:53.721][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:53.722][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2022-10-18 22:24:53.723][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:53.724][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-18 22:24:53.725][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-10-18 22:24:53.727][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-18 22:24:53.728][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:53.729][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2022-10-18 22:24:53.730][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-18 22:24:53.731][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2022-10-18 22:24:53.731][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2022-10-18 22:24:53.731][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2022-10-18 22:24:53.731][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2022-10-18 22:24:53.731][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2022-10-18 22:24:53.731][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2022-10-18 22:24:53.731][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2022-10-18 22:24:53.731][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2022-10-18 22:24:53.731][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2022-10-18 22:24:53.731][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2022-10-18 22:24:53.731][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2022-10-18 22:24:53.731][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2022-10-18 22:24:53.731][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2022-10-18 22:24:53.731][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2022-10-18 22:24:53.731][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2022-10-18 22:24:53.731][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2022-10-18 22:24:53.731][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2022-10-18 22:24:53.733][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-10-18 22:24:53.735][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-18 22:24:53.735][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2022-10-18 22:24:53.736][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-10-18 22:24:53.738][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:53.739][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:53.741][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-18 22:24:53.743][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-18 22:24:53.745][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-18 22:24:53.747][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-18 22:24:53.749][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2022-10-18 22:24:53.749][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2022-10-18 22:24:53.751][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-18 22:24:53.753][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-18 22:24:53.755][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-10-18 22:24:53.756][self$setPropertyValue]
biodb.DEBUG[2022-10-18 22:24:53.758][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-10-18 22:24:53.759][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-10-18 22:24:53.761][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-10-18 22:24:53.763][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-10-18 22:24:53.767][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2022-10-18 22:24:53.768][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2022-10-18 22:24:53.769][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2022-10-18 22:24:53.771][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2022-10-18 22:24:53.773][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-18 22:24:53.774][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-18 22:24:53.776][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2022-10-18 22:24:53.777][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2022-10-18 22:24:53.778][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2022-10-18 22:24:53.778][self$setPropertyValue] Setting property "urls" to "F:/biocbuild/bbs-3.15-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2022-10-18 22:24:53.780][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-18 22:24:53.781][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-18 22:24:53.782][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2022-10-18 22:24:53.784][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2022-10-18 22:24:53.785][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2022-10-18 22:24:53.787][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2022-10-18 22:24:53.789][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-18 22:24:53.791][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-18 22:24:53.794][private$addConnectorRules] Create new rule for URL "F:/biocbuild/bbs-3.15-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2022-10-18 22:24:53.795][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-18 22:24:53.796][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2022-10-18 22:24:53.798][biodb::testThat]
biodb.INFO [2022-10-18 22:24:53.800][biodb::testThat] Running test function test.searchMultipleWordsInDescription (" We can search for multiple words inside description field. ").
biodb.INFO [2022-10-18 22:24:53.801][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-18 22:24:53.802][biodb::testThat]
biodb.DEBUG[2022-10-18 22:24:53.819][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2022-10-18 22:24:53.830][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2022-10-18 22:24:53.833][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2022-10-18 22:24:53.840][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:53.842][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:53.844][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2022-10-18 22:24:53.846][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:53.847][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2022-10-18 22:24:53.853][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2022-10-18 22:24:53.854][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2022-10-18 22:24:53.855][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2022-10-18 22:24:53.857][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2022-10-18 22:24:53.858][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2022-10-18 22:24:53.859][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2022-10-18 22:24:53.862][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2022-10-18 22:24:53.863][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2022-10-18 22:24:53.866][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:53.868][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2022-10-18 22:24:53.871][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2022-10-18 22:24:53.873][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-18 22:24:53.876][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2022-10-18 22:24:53.877][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2022-10-18 22:24:53.893][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2022-10-18 22:24:53.895][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2022-10-18 22:24:53.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-18 22:24:53.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:53.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:53.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:53.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:53.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:53.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-18 22:24:53.915][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:53.916][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:53.918][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:53.919][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:53.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:53.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:53.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:53.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:53.929][ef$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:53.931][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:53.932][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:53.933][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:53.935][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:53.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:53.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:53.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:53.944][ef$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:53.945][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:53.946][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:53.947][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:53.949][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:53.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:53.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:53.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:53.962][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:53.964][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:53.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:53.968][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:53.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:53.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:53.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:53.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:53.979][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:53.980][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:53.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:53.983][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:53.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:53.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:53.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:53.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:53.994][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:53.995][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:53.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:53.998][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:53.999][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:54.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:54.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.008][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:54.010][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:54.011][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.012][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:54.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:54.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.029][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:54.031][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:54.032][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.033][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:54.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:54.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.044][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:54.045][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:54.047][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.048][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:54.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:54.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.059][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:54.060][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:54.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.063][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.064][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:54.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:54.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.073][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:54.076][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:54.077][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.078][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:54.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:54.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.090][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:54.092][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:54.094][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.096][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.103][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:54.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:54.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.117][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:54.119][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:54.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.123][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:54.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:54.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.139][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:54.141][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:54.143][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.145][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.147][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:54.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:54.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.160][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:54.162][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:54.164][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.166][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.169][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:54.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:54.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.183][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:54.185][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:54.187][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.188][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:54.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:54.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.204][ef$get] Asked field names are: super.class.
biodb.TRACE[2022-10-18 22:24:54.206][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:54.208][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.210][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.213][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2022-10-18 22:24:54.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:54.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:54.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:54.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:54.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:54.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:54.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:54.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.249][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:54.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:54.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.253][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:54.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:54.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.265][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:54.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:54.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.270][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:54.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:54.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.275][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:54.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:54.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.280][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:54.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:54.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:54.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:54.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:54.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:54.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:54.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:54.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:54.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:54.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:54.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:54.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:54.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:54.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:54.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:54.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:54.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:54.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:54.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:54.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.332][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:54.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:54.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:54.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:54.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:54.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:54.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:54.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:54.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:54.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:54.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:54.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:54.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.365][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:54.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:54.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.370][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:54.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:54.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.375][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:54.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:54.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.380][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:54.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:54.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.385][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:54.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:54.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.390][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:54.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:54.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:54.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:54.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:54.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:54.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:54.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:54.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:54.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:54.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:54.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:54.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:54.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:54.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.427][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:54.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:54.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.439][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:54.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:54.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.444][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:54.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:54.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:54.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:54.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:54.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:54.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:54.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:54.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.464][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:54.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:54.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.468][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:54.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:54.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:54.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:54.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.479][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:54.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:54.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:54.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:54.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.489][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:54.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:54.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.494][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:54.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:54.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.499][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:54.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:54.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.504][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:54.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:54.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.509][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-10-18 22:24:54.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:54.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:54.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:54.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:54.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:54.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:54.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:54.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.529][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-10-18 22:24:54.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:54.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.538][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:54.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:54.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.543][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:54.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:54.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.549][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:54.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:54.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.554][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:54.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:54.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:54.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:54.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.569][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:54.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:54.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.576][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:54.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:54.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:54.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:54.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.586][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:54.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:54.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:54.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:54.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:54.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:54.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:54.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:54.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:54.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:54.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:54.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:54.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:54.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:54.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-18 22:24:54.634][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2022-10-18 22:24:54.635][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:54.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:54.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.640][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:54.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:54.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.645][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:54.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:54.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.650][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:54.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:54.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-18 22:24:54.655][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2022-10-18 22:24:54.656][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2022-10-18 22:24:54.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-18 22:24:54.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:54.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:54.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:54.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:54.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:54.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:54.673][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2022-10-18 22:24:54.674][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2022-10-18 22:24:54.676][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:54.678][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2022-10-18 22:24:54.681][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2022-10-18 22:24:54.682][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-18 22:24:54.685][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2022-10-18 22:24:54.686][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2022-10-18 22:24:54.702][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2022-10-18 22:24:54.704][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2022-10-18 22:24:54.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-18 22:24:54.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:54.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:54.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:54.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:54.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:54.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-18 22:24:54.723][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:54.762][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:54.764][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.767][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:54.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:54.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.783][ef$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:54.785][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:54.787][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.789][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.791][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:54.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:54.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.804][ef$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:54.805][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:54.807][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.809][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.811][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:54.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:54.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.823][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:54.825][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:54.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.828][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:54.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:54.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.851][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:54.853][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:54.855][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.856][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:54.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:54.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.868][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:54.870][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:54.871][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.872][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.874][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:54.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:54.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.885][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:54.886][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:54.887][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.888][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:54.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:54.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.899][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:54.900][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:54.902][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.904][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:54.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:54.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.916][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:54.918][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:54.919][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.920][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:54.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:54.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.933][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:54.935][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:54.936][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.938][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.940][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:54.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:54.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.950][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:54.952][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:54.953][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.955][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:54.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:54.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.969][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:54.971][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:54.973][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.975][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:54.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:54.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.990][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:54.993][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:54.994][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:54.996][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:54.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:55.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:55.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.012][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:55.014][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:55.016][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.018][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.020][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:55.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:55.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.033][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:55.035][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:55.037][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.039][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.041][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:55.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:55.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.054][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:55.056][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:55.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.060][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.062][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:55.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:55.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.084][ef$get] Asked field names are: super.class.
biodb.TRACE[2022-10-18 22:24:55.087][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:55.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.091][ef$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.094][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2022-10-18 22:24:55.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:55.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:55.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:55.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:55.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:55.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:55.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:55.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.131][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:55.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:55.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.139][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:55.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:55.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.147][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-18 22:24:55.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-18 22:24:55.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.154][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:55.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:55.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.162][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:55.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:55.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.170][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-10-18 22:24:55.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-10-18 22:24:55.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:55.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:55.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:55.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:55.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-18 22:24:55.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-18 22:24:55.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:55.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:55.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:55.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:55.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:55.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-10-18 22:24:55.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:55.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:55.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:55.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:55.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:55.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-18 22:24:55.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:55.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:55.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:55.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:55.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.261][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:55.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-18 22:24:55.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:55.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:55.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:55.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:55.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:55.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-10-18 22:24:55.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.292][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:55.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:55.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.301][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:55.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:55.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.310][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:55.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:55.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.317][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:55.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:55.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.325][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:55.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:55.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.335][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-18 22:24:55.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-18 22:24:55.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:55.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:55.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:55.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:55.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.368][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-18 22:24:55.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-18 22:24:55.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:55.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:55.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:55.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:55.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:55.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:55.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.399][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:55.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:55.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.406][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:55.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:55.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.414][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:55.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-18 22:24:55.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:55.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:55.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:55.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:55.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:55.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-18 22:24:55.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.446][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:55.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:55.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.454][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:55.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:55.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.461][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:55.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:55.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.469][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:55.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:55.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.477][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:55.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:55.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:55.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-18 22:24:55.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.492][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:55.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:55.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.500][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:55.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:55.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-10-18 22:24:55.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-10-18 22:24:55.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.515][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-10-18 22:24:55.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:55.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.523][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:55.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:55.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:55.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:55.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-18 22:24:55.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:55.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.545][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-10-18 22:24:55.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-18 22:24:55.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:55.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:55.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.569][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:55.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:55.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.576][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:55.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:55.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:55.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:55.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.585][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-18 22:24:55.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-18 22:24:55.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.777][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:55.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:55.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.785][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:55.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:55.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:55.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:55.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.800][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:55.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-18 22:24:55.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:55.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:55.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:55.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:55.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:55.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:55.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:55.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:55.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:55.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:55.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-18 22:24:55.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-18 22:24:55.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-18 22:24:55.867][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2022-10-18 22:24:55.870][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:55.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:55.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.879][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:55.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:55.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.886][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:55.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:55.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.893][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:55.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:55.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-18 22:24:55.901][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2022-10-18 22:24:55.902][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2022-10-18 22:24:55.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-18 22:24:55.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:55.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:55.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:55.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:55.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:55.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:55.946][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2022-10-18 22:24:55.948][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2022-10-18 22:24:55.950][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2022-10-18 22:24:55.953][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:55.956][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:55.958][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2022-10-18 22:24:55.961][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:55.963][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2022-10-18 22:24:55.971][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2022-10-18 22:24:55.973][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2022-10-18 22:24:55.975][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2022-10-18 22:24:55.977][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2022-10-18 22:24:55.979][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2022-10-18 22:24:55.981][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2022-10-18 22:24:55.984][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:55.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:55.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:55.992][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:55.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:55.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:55.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:56.000][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:56.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:56.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:56.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:56.007][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:56.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:56.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:56.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:56.014][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:56.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:56.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:56.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:56.022][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:56.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:56.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:56.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:56.029][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:56.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:56.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:56.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-18 22:24:56.036][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2022-10-18 22:24:56.038][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2022-10-18 22:24:56.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-18 22:24:56.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:56.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:56.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:56.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:56.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:56.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-18 22:24:56.062][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:56.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:56.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:56.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:56.070][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:56.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:56.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:56.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:56.079][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:56.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:56.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:56.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:56.085][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:56.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:56.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:56.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:56.091][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:56.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:56.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:56.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:56.097][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:56.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:56.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:56.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:56.103][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:56.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:56.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:56.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-18 22:24:56.109][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2022-10-18 22:24:56.110][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2022-10-18 22:24:56.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-18 22:24:56.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:56.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:56.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:56.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:56.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:56.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-18 22:24:56.143][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2022-10-18 22:24:56.144][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2022-10-18 22:24:56.146][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2022-10-18 22:24:56.148][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:56.150][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:56.152][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2022-10-18 22:24:56.154][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-10-18 22:24:56.156][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2022-10-18 22:24:56.162][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2022-10-18 22:24:56.163][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2022-10-18 22:24:56.165][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2022-10-18 22:24:56.166][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2022-10-18 22:24:56.168][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2022-10-18 22:24:56.170][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2022-10-18 22:24:56.174][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:56.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:56.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:56.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:56.182][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:56.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:56.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:56.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:56.191][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:56.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:56.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:56.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:56.199][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:56.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:56.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:56.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:56.207][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:56.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:56.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:56.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:56.215][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:56.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:56.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:56.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:56.223][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:56.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:56.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:56.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-18 22:24:56.231][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2022-10-18 22:24:56.233][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2022-10-18 22:24:56.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-18 22:24:56.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:56.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:56.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:56.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:56.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:56.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-18 22:24:56.258][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:56.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:56.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:56.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:56.267][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:56.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:56.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:56.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:56.275][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:56.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:56.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:56.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:56.283][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:56.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:56.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:56.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:56.291][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:56.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:56.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:56.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:56.299][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:56.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:56.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:56.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-18 22:24:56.307][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-18 22:24:56.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-18 22:24:56.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-18 22:24:56.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-18 22:24:56.315][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2022-10-18 22:24:56.317][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2022-10-18 22:24:56.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-18 22:24:56.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:56.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:56.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:56.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:56.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:56.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-10-18 22:24:56.352][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-10-18 22:24:56.354][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2022-10-18 22:24:56.356][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2022-10-18 22:24:56.358][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-10-18 22:24:56.360][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-18 22:24:56.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-18 22:24:56.363][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-18 22:24:56.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-18 22:24:56.366][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-10-18 22:24:56.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 186 ]
>
> proc.time()
user system elapsed
12.18 0.76 14.32
biodbHmdb.Rcheck/biodbHmdb-Ex.timings
| name | user | system | elapsed | |
| HmdbMetabolitesConn | 2.72 | 1.25 | 3.98 | |
| HmdbMetabolitesEntry | 0.72 | 0.02 | 0.74 | |