| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:07:30 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the transite package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/transite.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1986/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| transite 1.12.1 (landing page) Konstantin Krismer
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: transite |
| Version: 1.12.1 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/transite_1.12.1.tar.gz && rm -rf transite.buildbin-libdir && mkdir transite.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=transite.buildbin-libdir transite_1.12.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL transite_1.12.1.zip && rm transite_1.12.1.tar.gz transite_1.12.1.zip |
| StartedAt: 2022-04-12 06:00:23 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:02:03 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 99.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/transite_1.12.1.tar.gz && rm -rf transite.buildbin-libdir && mkdir transite.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=transite.buildbin-libdir transite_1.12.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL transite_1.12.1.zip && rm transite_1.12.1.tar.gz transite_1.12.1.zip
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install for i386
* installing *source* package 'transite' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c scoring.cpp -o scoring.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o transite.dll tmp.def RcppExports.o scoring.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/transite.buildbin-libdir/00LOCK-transite/00new/transite/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'transite'
finding HTML links ... done
RBPMotif-class html
SpectrumScore-class html
calculate_kmer_enrichment html
calculate_local_consistency html
calculate_motif_enrichment html
calculate_transcript_mc html
check_kmers html
classify_spectrum html
compute_kmer_enrichment html
count_homopolymer_corrected_kmers html
create_kmer_motif html
create_matrix_motif html
draw_volcano_plot html
estimate_significance html
estimate_significance_core html
ge html
generate_iupac_by_kmers html
generate_iupac_by_matrix html
generate_kmers html
generate_kmers_from_iupac html
generate_permuted_enrichments html
geometric_mean html
get_motif_by_id html
get_motif_by_rbp html
get_motifs html
get_motifs_meta_info html
get_ppm html
init_iupac_lookup_table html
kmers_enrichment html
motifs html
p_combine html
run_kmer_spma html
run_kmer_tsma html
run_matrix_spma html
run_matrix_tsma html
score_sequences html
score_spectrum html
score_transcripts html
score_transcripts_single_motif html
set_motifs html
subdivide_data html
toy_motif_matrix html
transite html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'transite' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c scoring.cpp -o scoring.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o transite.dll tmp.def RcppExports.o scoring.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/transite.buildbin-libdir/transite/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'transite' as transite_1.12.1.zip
* DONE (transite)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'transite' successfully unpacked and MD5 sums checked