Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:07:23 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for slingshot on tokay2


To the developers/maintainers of the slingshot package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/slingshot.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1818/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
slingshot 2.2.1  (landing page)
Kelly Street
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/slingshot
git_branch: RELEASE_3_14
git_last_commit: b93c716
git_last_commit_date: 2022-04-07 16:27:11 -0400 (Thu, 07 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: slingshot
Version: 2.2.1
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/slingshot_2.2.1.tar.gz && rm -rf slingshot.buildbin-libdir && mkdir slingshot.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=slingshot.buildbin-libdir slingshot_2.2.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL slingshot_2.2.1.zip && rm slingshot_2.2.1.tar.gz slingshot_2.2.1.zip
StartedAt: 2022-04-12 05:44:52 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 05:45:54 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 61.3 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/slingshot_2.2.1.tar.gz && rm -rf slingshot.buildbin-libdir && mkdir slingshot.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=slingshot.buildbin-libdir slingshot_2.2.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL slingshot_2.2.1.zip && rm slingshot_2.2.1.tar.gz slingshot_2.2.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 47  500k   47  239k    0     0   626k      0 --:--:-- --:--:-- --:--:--  625k
100  500k  100  500k    0     0   779k      0 --:--:-- --:--:-- --:--:--  780k

install for i386

* installing *source* package 'slingshot' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for 'slingshot' with signature 'data="ClusterExperiment"': no definition for class "ClusterExperiment"
** help
*** installing help indices
  converting help for package 'slingshot'
    finding HTML links ... done
    SlingshotDataSet-class                  html  
    finding level-2 HTML links ... done

    SlingshotDataSet                        html  
    as.PseudotimeOrdering                   html  
    as.SlingshotDataSet                     html  
    embedCurves                             html  
    getCurves                               html  
    getLineages                             html  
    newSlingshotDataSet                     html  
    pairs-SlingshotDataSet                  html  
    plot-SlingshotDataSet                   html  
    plot3d-SlingshotDataSet                 html  
    predict.SlingshotDataSet                html  
    slingBranchGraph                        html  
    slingBranchID                           html  
    slingClusterLabels                      html  
    slingCurves                             html  
    slingLineages                           html  
    slingMST                                html  
    slingParams                             html  
    slingPseudotime                         html  
    slingReducedDim                         html  
    slingshot                               html  
    slingshotExample                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'slingshot' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'slingshot' as slingshot_2.2.1.zip
* DONE (slingshot)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'slingshot' successfully unpacked and MD5 sums checked