Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:07:13 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for rhdf5 on tokay2


To the developers/maintainers of the rhdf5 package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rhdf5.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1598/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rhdf5 2.38.1  (landing page)
Mike Smith
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/rhdf5
git_branch: RELEASE_3_14
git_last_commit: 1a5587e
git_last_commit_date: 2022-03-09 08:07:18 -0400 (Wed, 09 Mar 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: rhdf5
Version: 2.38.1
Command: rm -rf rhdf5.buildbin-libdir && mkdir rhdf5.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rhdf5.buildbin-libdir rhdf5_2.38.1.tar.gz
StartedAt: 2022-04-13 06:58:22 -0400 (Wed, 13 Apr 2022)
EndedAt: 2022-04-13 06:59:12 -0400 (Wed, 13 Apr 2022)
EllapsedTime: 49.4 seconds
RetCode: 0
Status:   OK  
PackageFile: rhdf5_2.38.1.zip
PackageFileSize: 7.55 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf rhdf5.buildbin-libdir && mkdir rhdf5.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rhdf5.buildbin-libdir rhdf5_2.38.1.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'rhdf5' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5.c -o H5.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5A.c -o H5A.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5D.c -o H5D.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5E.c -o H5E.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5F.c -o H5F.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5G.c -o H5G.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5I.c -o H5I.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5L.c -o H5L.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5O.c -o H5O.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5P.c -o H5P.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5S.c -o H5S.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5S_extras.c -o H5S_extras.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5T.c -o H5T.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5Z.c -o H5Z.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5constants.c -o H5constants.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c HandleList.cpp -o HandleList.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c HandleListWrap.c -o HandleListWrap.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c bit64conversion.c -o bit64conversion.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c external_filters.c -o external_filters.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c h5dump.c -o h5dump.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c h5ls.c -o h5ls.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c h5testLock.c -o h5testLock.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c h5writeDataFrame.c -o h5writeDataFrame.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c printdatatype.c -o printdatatype.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c utils.c -o utils.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c wrap.c -o wrap.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o rhdf5.dll tmp.def H5.o H5A.o H5D.o H5E.o H5F.o H5G.o H5I.o H5L.o H5O.o H5P.o H5S.o H5S_extras.o H5T.o H5Z.o H5constants.o HandleList.o HandleListWrap.o bit64conversion.o external_filters.o h5dump.o h5ls.o h5testLock.o h5writeDataFrame.o printdatatype.o utils.o wrap.o -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/library/Rhdf5lib/lib/i386 -lhdf5 -lcurl -lssh2 -lssl -lcrypto -lwldap32 -lws2_32 -lcrypt32 -lszip -lz -lpsapi -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/rhdf5.buildbin-libdir/00LOCK-rhdf5/00new/rhdf5/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'rhdf5'
    finding HTML links ... done
    H5Aclose                                html  
    H5Acreate                               html  
    H5Adelete                               html  
    H5Aexists                               html  
    H5Aget_name                             html  
    H5Aget_space                            html  
    H5Aget_type                             html  
    H5Aopen                                 html  
    H5Aread                                 html  
    H5Awrite                                html  
    H5Dchunk_dims                           html  
    H5Dclose                                html  
    H5Dcreate                               html  
    H5Dget_create_plist                     html  
    H5Dget_space                            html  
    H5Dget_storage_size                     html  
    H5Dget_type                             html  
    H5Dopen                                 html  
    H5Dread                                 html  
    H5Dset_extent                           html  
    H5Dwrite                                html  
    H5Fclose                                html  
    H5Fcreate                               html  
    H5Fflush                                html  
    H5Fget_filesize                         html  
    H5Fget_name                             html  
    H5Fget_plist                            html  
    H5Fis_hdf5                              html  
    H5Fopen                                 html  
    H5Gclose                                html  
    H5Gcreate                               html  
    H5Gcreate_anon                          html  
    H5Gget_info                             html  
    H5Gopen                                 html  
    H5IdComponent-class                     html  
    H5Iget_name                             html  
    H5Iget_type                             html  
    H5Iis_valid                             html  
    H5Lcopy                                 html  
    H5Lcreate_external                      html  
    H5Ldelete                               html  
    H5Lexists                               html  
    H5Lget_info                             html  
    H5Lmove                                 html  
    H5Oclose                                html  
    H5Oget_num_attrs                        html  
    H5Olink                                 html  
    H5Oopen                                 html  
    H5P_chunk                               html  
    H5P_chunk_cache                         html  
    H5P_fill_time                           html  
    H5P_fill_value                          html  
    H5P_istore_k                            html  
    H5P_layout                              html  
    H5P_libver_bounds                       html  
    H5P_shared_mesg_nindexes                html  
    H5P_shared_mesg_phase_change            html  
    H5P_sizes                               html  
    H5P_sym_k                               html  
    H5P_userblock                           html  
    H5Pclose                                html  
    H5Pcopy                                 html  
    H5Pcreate                               html  
    H5Pfill_value_defined                   html  
    H5Pget_class                            html  
    H5Pget_version                          html  
    H5Pobject_track_times                   html  
    H5Pset_blosc                            html  
    H5Pset_bzip2                            html  
    H5Pset_deflate                          html  
    H5Pset_fapl_ros3                        html  
    H5Pset_lzf                              html  
    H5Pset_shuffle                          html  
    H5Pset_szip                             html  
    H5Pshared_mesg_index                    html  
    H5Sclose                                html  
    H5Scombine_hyperslab                    html  
    H5Scombine_select                       html  
    H5Scopy                                 html  
    H5Screate                               html  
    H5Screate_simple                        html  
    H5Sget_select_npoints                   html  
    H5Sget_simple_extent_dims               html  
    H5Sis_simple                            html  
    H5Sselect_all                           html  
    H5Sselect_hyperslab                     html  
    H5Sselect_index                         html  
    H5Sselect_none                          html  
    H5Sselect_valid                         html  
    H5Sset_extent_simple                    html  
    H5Sunlimited                            html  
    H5T_cset                                html  
    H5T_size                                html  
    H5T_strpad                              html  
    H5Tcopy                                 html  
    H5Tis_variable_str                      html  
    H5Zfilter_avail                         html  
    H5functions                             html  
    h5_FileLocking                          html  
    h5_createAttribute                      html  
    h5_createDataset                        html  
    h5_createFile                           html  
    h5_createGroup                          html  
    h5_delete                               html  
    h5_deleteAttribute                      html  
    h5_dump                                 html  
    h5_errorHandling                        html  
    h5_read                                 html  
    h5_readAttributes                       html  
    h5_save                                 html  
    h5_set_extent                           html  
    h5_write                                html  
    h5_writeAttribute                       html  
    h5checkFilters                          html  
    h5closeAll                              html  
    h5constants                             html  
    h5listObjects                           html  
    h5ls                                    html  
    h5version                               html  
    rhdf5                                   html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'rhdf5' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5.c -o H5.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5A.c -o H5A.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5D.c -o H5D.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5E.c -o H5E.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5F.c -o H5F.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5G.c -o H5G.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5I.c -o H5I.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5L.c -o H5L.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5O.c -o H5O.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5P.c -o H5P.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5S.c -o H5S.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5S_extras.c -o H5S_extras.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5T.c -o H5T.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5Z.c -o H5Z.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c H5constants.c -o H5constants.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c HandleList.cpp -o HandleList.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c HandleListWrap.c -o HandleListWrap.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c bit64conversion.c -o bit64conversion.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c external_filters.c -o external_filters.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c h5dump.c -o h5dump.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c h5ls.c -o h5ls.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c h5testLock.c -o h5testLock.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c h5writeDataFrame.c -o h5writeDataFrame.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c printdatatype.c -o printdatatype.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c utils.c -o utils.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include'   -I"C:/extsoft/include"  "-w"   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c wrap.c -o wrap.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o rhdf5.dll tmp.def H5.o H5A.o H5D.o H5E.o H5F.o H5G.o H5I.o H5L.o H5O.o H5P.o H5S.o H5S_extras.o H5T.o H5Z.o H5constants.o HandleList.o HandleListWrap.o bit64conversion.o external_filters.o h5dump.o h5ls.o h5testLock.o h5writeDataFrame.o printdatatype.o utils.o wrap.o -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/library/Rhdf5lib/lib/x64 -lhdf5 -lcurl -lssh2 -lssl -lcrypto -lwldap32 -lws2_32 -lcrypt32 -lszip -lz -lpsapi -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/rhdf5.buildbin-libdir/rhdf5/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rhdf5' as rhdf5_2.38.1.zip
* DONE (rhdf5)