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This page was generated on 2022-04-13 12:07:08 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for pulsedSilac on tokay2


To the developers/maintainers of the pulsedSilac package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pulsedSilac.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1485/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pulsedSilac 1.8.0  (landing page)
Marc Pagès-Gallego
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/pulsedSilac
git_branch: RELEASE_3_14
git_last_commit: 69698be
git_last_commit_date: 2021-10-26 12:54:42 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: pulsedSilac
Version: 1.8.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/pulsedSilac_1.8.0.tar.gz && rm -rf pulsedSilac.buildbin-libdir && mkdir pulsedSilac.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pulsedSilac.buildbin-libdir pulsedSilac_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL pulsedSilac_1.8.0.zip && rm pulsedSilac_1.8.0.tar.gz pulsedSilac_1.8.0.zip
StartedAt: 2022-04-12 05:40:30 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 05:42:11 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 101.0 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/pulsedSilac_1.8.0.tar.gz && rm -rf pulsedSilac.buildbin-libdir && mkdir pulsedSilac.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pulsedSilac.buildbin-libdir pulsedSilac_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL pulsedSilac_1.8.0.zip && rm pulsedSilac_1.8.0.tar.gz pulsedSilac_1.8.0.zip
###
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##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 47 1322k   47  624k    0     0   669k      0  0:00:01 --:--:--  0:00:01  669k
100 1322k  100 1322k    0     0   911k      0  0:00:01  0:00:01 --:--:--  911k

install for i386

* installing *source* package 'pulsedSilac' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
in method for 'addMisscleavedPeptides' with signature '"SilacProteinExperiment"': no definition for class "SilacProteinExperiment"
in method for 'addMisscleavedPeptides' with signature '"SilacPeptideExperiment"': no definition for class "SilacPeptideExperiment"
in method for 'addMisscleavedPeptides' with signature '"SilacProteomicsExperiment"': no definition for class "SilacProteomicsExperiment"
** help
*** installing help indices
  converting help for package 'pulsedSilac'
    finding HTML links ... done
    SilacPeptideExperiment-class            html  
    finding level-2 HTML links ... done

    SilacPeptideExperiment-constructor      html  
    SilacProteinExperiment-class            html  
    SilacProteinExperiment-constructor      html  
    SilacProteinPeptideExperiment-accessors
                                            html  
    SilacProteomicsExperiment-accessors     html  
    SilacProteomicsExperiment-class         html  
    SilacProteomicsExperiment-constructor   html  
    addMisscleavedPeptides                  html  
    barplotCounts                           html  
    barplotTimeCoverage                     html  
    buildLinkerDf                           html  
    calculateAIC                            html  
    calculateIsotopeFraction                html  
    calculateIsotopeRatio                   html  
    calculateOldIsotopePool                 html  
    compareAIC                              html  
    filterByMissingTimepoints               html  
    mefPE                                   html  
    merge                                   html  
    mergeModelsLists                        html  
    modelTurnover                           html  
    mostStable                              html  
    plotDistributionAssay                   html  
    plotDistributionModel                   html  
    plotIndividualModel                     html  
    recycleLightLysine                      html  
    scatterCompareAssays                    html  
    scatterCompareModels                    html  
    upsetTimeCoverage                       html  
    wormsPE                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'pulsedSilac' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pulsedSilac' as pulsedSilac_1.8.0.zip
* DONE (pulsedSilac)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'pulsedSilac' successfully unpacked and MD5 sums checked