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This page was generated on 2022-04-13 12:07:08 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for ptairMS on tokay2


To the developers/maintainers of the ptairMS package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ptairMS.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
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raw results

Package 1483/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ptairMS 1.2.0  (landing page)
camille Roquencourt
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/ptairMS
git_branch: RELEASE_3_14
git_last_commit: 0f1883b
git_last_commit_date: 2021-10-26 13:08:34 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ptairMS
Version: 1.2.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ptairMS_1.2.0.tar.gz && rm -rf ptairMS.buildbin-libdir && mkdir ptairMS.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ptairMS.buildbin-libdir ptairMS_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ptairMS_1.2.0.zip && rm ptairMS_1.2.0.tar.gz ptairMS_1.2.0.zip
StartedAt: 2022-04-12 07:22:41 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 07:24:10 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 89.4 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ptairMS_1.2.0.tar.gz && rm -rf ptairMS.buildbin-libdir && mkdir ptairMS.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ptairMS.buildbin-libdir ptairMS_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ptairMS_1.2.0.zip && rm ptairMS_1.2.0.tar.gz ptairMS_1.2.0.zip
###
##############################################################################
##############################################################################


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100  705k  100  705k    0     0   940k      0 --:--:-- --:--:-- --:--:--  941k

install for i386

* installing *source* package 'ptairMS' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c align.cpp -o align.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c findEqualGreaterM.cpp -o findEqualGreaterM.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ptairMS.dll tmp.def RcppExports.o align.o findEqualGreaterM.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/ptairMS.buildbin-libdir/00LOCK-ptairMS/00new/ptairMS/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
in method for 'annotateVOC' with signature '"ExpressionSet"': no definition for class "ExpressionSet"
in method for 'writeEset' with signature '"ExpressionSet"': no definition for class "ExpressionSet"
** help
*** installing help indices
  converting help for package 'ptairMS'
    finding HTML links ... done
    LocalMaximaSG                           html  
    OptimalWindowsSG                        html  
    PeakList                                html  
    TransmissionCurve                       html  
    aggregate                               html  
    align                                   html  
    alignSamples                            html  
    annotation                              html  
    calibration                             html  
    calibrationFun                          html  
    changeTimeLimits                        html  
    convert_to_mzML                         html  
    createPtrSet                            html  
    cumulative_fit_function                 html  
    deadTimeCorr                            html  
    defineKnots                             html  
    detectPeak                              html  
    determinePeakShape                      html  
    exportSampleMetada                      html  
    extractEIC                              html  
    fit_averagePeak                         html  
    fit_averagePeak_function                html  
    formula2mass                            html  
    getDirectory                            html  
    getFileNames                            html  
    getPeakList                             html  
    getSampleMetadata                       html  
    importSampleMetadata                    html  
    impute                                  html  
    imputeMat                               html  
    initializeFit                           html  
    makeSubGroup                            html  
    plot                                    html  
    plotCalib                               html  
    plotFeatures                            html  
    plotPeakShape                           html  
    plotRaw                                 html  
    plotTIC                                 html  
    ptairMS-package                         html  
    ptrRaw                                  html  
    ptrSet                                  html  
    readRaw                                 html  
    resetSampleMetadata                     html  
    rmPeakList                              html  
    setSampleMetadata                       html  
    show-ptrRaw-method                      html  
    show-ptrSet-method                      html  
    snipBase                                html  
    timeLimits                              html  
    updatePtrSet                            html  
    width                                   html  
    writeEset                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ptairMS' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c align.cpp -o align.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c findEqualGreaterM.cpp -o findEqualGreaterM.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ptairMS.dll tmp.def RcppExports.o align.o findEqualGreaterM.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/ptairMS.buildbin-libdir/ptairMS/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ptairMS' as ptairMS_1.2.0.zip
* DONE (ptairMS)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'ptairMS' successfully unpacked and MD5 sums checked