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This page was generated on 2022-04-13 12:07:06 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for plotgardener on tokay2


To the developers/maintainers of the plotgardener package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/plotgardener.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1430/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
plotgardener 1.0.17  (landing page)
Nicole Kramer
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/plotgardener
git_branch: RELEASE_3_14
git_last_commit: 36d2d67
git_last_commit_date: 2022-03-16 14:02:26 -0400 (Wed, 16 Mar 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: plotgardener
Version: 1.0.17
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/plotgardener_1.0.17.tar.gz && rm -rf plotgardener.buildbin-libdir && mkdir plotgardener.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=plotgardener.buildbin-libdir plotgardener_1.0.17.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL plotgardener_1.0.17.zip && rm plotgardener_1.0.17.tar.gz plotgardener_1.0.17.zip
StartedAt: 2022-04-12 06:34:42 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:38:45 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 243.5 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/plotgardener_1.0.17.tar.gz && rm -rf plotgardener.buildbin-libdir && mkdir plotgardener.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=plotgardener.buildbin-libdir plotgardener_1.0.17.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL plotgardener_1.0.17.zip && rm plotgardener_1.0.17.tar.gz plotgardener_1.0.17.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 44 2297k   44 1021k    0     0  1096k      0  0:00:02 --:--:--  0:00:02 1097k
100 2297k  100 2297k    0     0  1439k      0  0:00:01  0:00:01 --:--:-- 1439k

install for i386

* installing *source* package 'plotgardener' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c checkRow.cpp -o checkRow.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c rebinBigwig.cpp -o rebinBigwig.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o plotgardener.dll tmp.def RcppExports.o checkRow.o rebinBigwig.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/plotgardener.buildbin-libdir/00LOCK-plotgardener/00new/plotgardener/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'plotgardener'
    finding HTML links ... done
    annoDomains                             html  
    annoGenomeLabel                         html  
    annoHeatmapLegend                       html  
    annoHighlight                           html  
    annoPixels                              html  
    annoSegments                            html  
    annoText                                html  
    annoXaxis                               html  
    annoYaxis                               html  
    annoZoomLines                           html  
    assembly                                html  
    c                                       html  
    colorby                                 html  
    defaultPackages                         html  
    genomes                                 html  
    mapColors                               html  
    pageCreate                              html  
    pageGuideHide                           html  
    pageGuideHorizontal                     html  
    pageGuideShow                           html  
    pageGuideVertical                       html  
    pagePlotPlace                           html  
    pagePlotRemove                          html  
    pgParams                                html  
    plotCircle                              html  
    plotGG                                  html  
    plotGenes                               html  
    plotGenomeLabel                         html  
    plotHicRectangle                        html  
    plotHicSquare                           html  
    plotHicTriangle                         html  
    plotIdeogram                            html  
    plotLegend                              html  
    plotManhattan                           html  
    plotPairs                               html  
    plotPairsArches                         html  
    plotPolygon                             html  
    plotRanges                              html  
    plotRaster                              html  
    plotRect                                html  
    plotSegments                            html  
    plotSignal                              html  
    plotText                                html  
    plotTranscripts                         html  
    plotgardener                            html  
    readBigwig                              html  
    readHic                                 html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'plotgardener' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c checkRow.cpp -o checkRow.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c rebinBigwig.cpp -o rebinBigwig.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o plotgardener.dll tmp.def RcppExports.o checkRow.o rebinBigwig.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/plotgardener.buildbin-libdir/plotgardener/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'plotgardener' as plotgardener_1.0.17.zip
* DONE (plotgardener)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'plotgardener' successfully unpacked and MD5 sums checked