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This page was generated on 2022-04-13 12:07:03 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for pathwayPCA on tokay2


To the developers/maintainers of the pathwayPCA package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pathwayPCA.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1381/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pathwayPCA 1.10.0  (landing page)
Gabriel Odom
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/pathwayPCA
git_branch: RELEASE_3_14
git_last_commit: 1a2a816
git_last_commit_date: 2021-10-26 12:50:20 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: pathwayPCA
Version: 1.10.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/pathwayPCA_1.10.0.tar.gz && rm -rf pathwayPCA.buildbin-libdir && mkdir pathwayPCA.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pathwayPCA.buildbin-libdir pathwayPCA_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL pathwayPCA_1.10.0.zip && rm pathwayPCA_1.10.0.tar.gz pathwayPCA_1.10.0.zip
StartedAt: 2022-04-12 04:10:25 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 04:13:34 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 189.6 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/pathwayPCA_1.10.0.tar.gz && rm -rf pathwayPCA.buildbin-libdir && mkdir pathwayPCA.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pathwayPCA.buildbin-libdir pathwayPCA_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL pathwayPCA_1.10.0.zip && rm pathwayPCA_1.10.0.tar.gz pathwayPCA_1.10.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 27 3494k   27  976k    0     0  1005k      0  0:00:03 --:--:--  0:00:03 1004k
 59 3494k   59 2088k    0     0  1060k      0  0:00:03  0:00:01  0:00:02 1060k
100 3494k  100 3494k    0     0  1288k      0  0:00:02  0:00:02 --:--:-- 1289k

install for i386

* installing *source* package 'pathwayPCA' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'pathwayPCA'
    finding HTML links ... done
    AESPCA_pVals                            html  
    CheckAssay                              html  
    CheckPwyColl                            html  
    CheckSampleIDs                          html  
    Contains                                html  
    ControlFDR                              html  
    CreateOmics                             html  
    CreateOmicsPathway                      html  
    CreatePathwayCollection                 html  
    ExtractAESPCs                           html  
    GumbelMixpValues                        html  
    IntersectOmicsPwyCollct                 html  
    JoinPhenoAssay                          html  
    LoadOntoPCs                             html  
    OmicsCateg-class                        html  
    OmicsPathway-class                      html  
    OmicsReg-class                          html  
    OmicsSurv-class                         html  
    OptimGumbelMixParams                    html  
    PathwaytValues                          html  
    PermTestCateg                           html  
    PermTestReg                             html  
    PermTestSurv                            html  
    SE2Tidy                                 html  
    SubsetPathwayCollection                 html  
    SubsetPathwayData                       html  
    SuperPCA_pVals                          html  
    TabulatepValues                         html  
    TransposeAssay                          html  
    ValidOmicsSurv                          html  
    WhichPathways                           html  
    aespca                                  html  
    colonSurv_df                            html  
    colon_pathwayCollection                 html  
    coxTrain_fun                            html  
    getPathPCLs                             html  
    getPathpVals                            html  
    get_set_OmicsPathway                    html  
    get_set_OmicsRegCateg                   html  
    get_set_OmicsSurv                       html  
    glmTrain_fun                            html  
    lars.lsa                                html  
    mysvd                                   html  
    normalize                               html  
    olsTrain_fun                            html  
    pathwayPCA-package                      html  
    pathway_tControl                        html  
    pathway_tScores                         html  
    permuteSamps                            html  
    print.pathwayCollection                 html  
    read_gmt                                html  
    show-OmicsPathway-method                html  
    superpc.st                              html  
    superpc.train                           html  
    wikipwsHS_Entrez_pathwayCollection      html  
    wikipwsHS_Symbol_pathwayCollection      html  
    write_gmt                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'pathwayPCA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pathwayPCA' as pathwayPCA_1.10.0.zip
* DONE (pathwayPCA)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'pathwayPCA' successfully unpacked and MD5 sums checked