Back to Multiple platform build/check report for BioC 3.14
ABCDEFGHIJKLMNO[P]QRSTUVWXYZ

This page was generated on 2022-04-13 12:07:03 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for pathVar on tokay2


To the developers/maintainers of the pathVar package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pathVar.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1379/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pathVar 1.24.0  (landing page)
Samuel Zimmerman
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/pathVar
git_branch: RELEASE_3_14
git_last_commit: 1585e11
git_last_commit_date: 2021-10-26 12:23:07 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: pathVar
Version: 1.24.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/pathVar_1.24.0.tar.gz && rm -rf pathVar.buildbin-libdir && mkdir pathVar.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pathVar.buildbin-libdir pathVar_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL pathVar_1.24.0.zip && rm pathVar_1.24.0.tar.gz pathVar_1.24.0.zip
StartedAt: 2022-04-12 05:14:23 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 05:16:13 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 110.0 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/pathVar_1.24.0.tar.gz && rm -rf pathVar.buildbin-libdir && mkdir pathVar.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pathVar.buildbin-libdir pathVar_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL pathVar_1.24.0.zip && rm pathVar_1.24.0.tar.gz pathVar_1.24.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 73  903k   73  666k    0     0   933k      0 --:--:-- --:--:-- --:--:--  934k
100  903k  100  903k    0     0   790k      0  0:00:01  0:00:01 --:--:--  791k

install for i386

* installing *source* package 'pathVar' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'pathVar'
    finding HTML links ... done
    bock                                    html  
    diagnosticsVarPlots                     html  
    diagnosticsVarPlotsTwoSample            html  
    geneDistributionSet-class               html  
    geneDistributionSet2-class              html  
    geneDistributionSet3-class              html  
    geneSet-class                           html  
    getGenes                                html  
    makeDBList                              html  
    pathVar-package                         html  
    pathVarOneSample                        html  
    pathVarTwoSamplesCont                   html  
    pathVarTwoSamplesDisc                   html  
    plotAllTwoSampleDistributionCounts      html  
    plotPway                                html  
    pways.kegg                              html  
    pways.reactome                          html  
    saveAsPDF                               html  
    sigPway                                 html  
    significantPathway-class                html  
    significantPathway2-class               html  
    significantPathway3-class               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'pathVar' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pathVar' as pathVar_1.24.0.zip
* DONE (pathVar)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'pathVar' successfully unpacked and MD5 sums checked