Back to Multiple platform build/check report for BioC 3.14
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2022-04-13 12:06:54 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for mina on tokay2


To the developers/maintainers of the mina package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mina.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1153/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mina 1.2.0  (landing page)
Rui Guan
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/mina
git_branch: RELEASE_3_14
git_last_commit: 0c8ce8b
git_last_commit_date: 2021-10-26 13:05:26 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: mina
Version: 1.2.0
Command: rm -rf mina.buildbin-libdir && mkdir mina.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mina.buildbin-libdir mina_1.2.0.tar.gz
StartedAt: 2022-04-13 06:36:28 -0400 (Wed, 13 Apr 2022)
EndedAt: 2022-04-13 06:37:42 -0400 (Wed, 13 Apr 2022)
EllapsedTime: 73.6 seconds
RetCode: 0
Status:   OK  
PackageFile: mina_1.2.0.zip
PackageFileSize: 8.419 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf mina.buildbin-libdir && mkdir mina.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mina.buildbin-libdir mina_1.2.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'mina' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c cp_cor.cpp -o cp_cor.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o mina.dll tmp.def RcppExports.o cp_cor.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/mina.buildbin-libdir/00LOCK-mina/00new/mina/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'norm' in package 'mina'
** help
*** installing help indices
  converting help for package 'mina'
    finding HTML links ... done
    adj-matrix                              html  
    adj-mina                                html  
    adj                                     html  
    adj_accessor                            html  
    adj_method_list                         html  
    bs_pm-mina                              html  
    bs_pm                                   html  
    bs_pm_accessor                          html  
    check_mina                              html  
    check_mina_de                           html  
    check_mina_qu                           html  
    cls                                     html  
    cls_accessor                            html  
    cls_tab                                 html  
    cls_tab_accessor                        html  
    com_dis-matrix                          html  
    com_dis-mina                            html  
    com_dis                                 html  
    com_dis_list                            html  
    com_plot-mina                           html  
    com_plot                                html  
    com_r2-mina                             html  
    com_r2                                  html  
    cp_cor                                  html  
    data-hmp                                html  
    data-maize                              html  
    des_accessor                            html  
    dis_accessor                            html  
    dis_stat_accessor                       html  
    dmr-matrix                              html  
    dmr-mina                                html  
    dmr                                     html  
    dmr_accessor                            html  
    filter_mat                              html  
    fit_tabs-mina                           html  
    fit_tabs                                html  
    get_contrast                            html  
    get_contrast_grp                        html  
    get_dis_df                              html  
    get_ja                                  html  
    get_ja0                                 html  
    get_ja0_grp                             html  
    get_ja_grp                              html  
    get_net_cls_tab-matrix-data.frame-method
                                            html  
    get_net_cls_tab                         html  
    get_r2-mat                              html  
    get_r2                                  html  
    get_rep-matrix                          html  
    get_rep-mima                            html  
    get_spectra                             html  
    get_stat                                html  
    hmp_des                                 html  
    hmp_otu                                 html  
    maize_asv                               html  
    maize_asv2                              html  
    maize_des                               html  
    maize_des2                              html  
    mat_or_NULL-class                       html  
    mina-class                              html  
    net_cls-matrix                          html  
    net_cls-mina                            html  
    net_cls                                 html  
    net_cls_tab-mina-method                 html  
    net_cls_tab                             html  
    net_dis-mina                            html  
    net_dis                                 html  
    net_dis_accessor                        html  
    net_dis_indi                            html  
    net_dis_pcoa                            html  
    net_dis_plot                            html  
    net_grp_cmp                             html  
    net_node_cmp                            html  
    norm_accessor                           html  
    norm_by_raref                           html  
    norm_by_total                           html  
    norm_tab-matrix                         html  
    norm_tab-mina                           html  
    norm_tab                                html  
    norm_tab_method_list                    html  
    pcoa_plot                               html  
    rarefaction_subsample                   html  
    re_format_AP                            html  
    re_format_MCL                           html  
    sim_par                                 html  
    sparcc                                  html  
    tab_accessor                            html  
    tina-matrix-method                      html  
    tina                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'mina' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c cp_cor.cpp -o cp_cor.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o mina.dll tmp.def RcppExports.o cp_cor.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/mina.buildbin-libdir/mina/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mina' as mina_1.2.0.zip
* DONE (mina)