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This page was generated on 2022-04-13 12:06:51 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for metabCombiner on tokay2


To the developers/maintainers of the metabCombiner package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metabCombiner.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1090/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metabCombiner 1.4.0  (landing page)
Hani Habra
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/metabCombiner
git_branch: RELEASE_3_14
git_last_commit: a9fbf51
git_last_commit_date: 2021-10-26 13:04:04 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: metabCombiner
Version: 1.4.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/metabCombiner_1.4.0.tar.gz && rm -rf metabCombiner.buildbin-libdir && mkdir metabCombiner.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metabCombiner.buildbin-libdir metabCombiner_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL metabCombiner_1.4.0.zip && rm metabCombiner_1.4.0.tar.gz metabCombiner_1.4.0.zip
StartedAt: 2022-04-12 06:52:33 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:55:11 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 158.0 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/metabCombiner_1.4.0.tar.gz && rm -rf metabCombiner.buildbin-libdir && mkdir metabCombiner.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metabCombiner.buildbin-libdir metabCombiner_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL metabCombiner_1.4.0.zip && rm metabCombiner_1.4.0.tar.gz metabCombiner_1.4.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  2 2281k    2 49737    0     0   315k      0  0:00:07 --:--:--  0:00:07  315k
 64 2281k   64 1461k    0     0  1267k      0  0:00:01  0:00:01 --:--:-- 1267k
100 2281k  100 2281k    0     0  1492k      0  0:00:01  0:00:01 --:--:-- 1491k

install for i386

* installing *source* package 'metabCombiner' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c binByMZ.c -o binByMZ.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c findDuplicates.c -o findDuplicates.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c labelRows.c -o labelRows.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c metabCombiner_init.c -o metabCombiner_init.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c resolveRows.c -o resolveRows.o
resolveRows.c: In function 'resolveRows':
resolveRows.c:250:6: warning: variable 'sgnum' set but not used [-Wunused-but-set-variable]
  int sgnum = 0;
      ^~~~~
resolveRows.c:249:14: warning: unused variable 'filename' [-Wunused-variable]
  const char *filename = "output.txt";
              ^~~~~~~~
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c selectAnchors.c -o selectAnchors.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c write2file.c -o write2file.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o metabCombiner.dll tmp.def binByMZ.o findDuplicates.o labelRows.o metabCombiner_init.o resolveRows.o selectAnchors.o write2file.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/metabCombiner.buildbin-libdir/00LOCK-metabCombiner/00new/metabCombiner/libs/i386
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'metabCombiner'
    finding HTML links ... done
    Qdata                                   html  
    adductdata                              html  
    adjustData                              html  
    batchCombine                            html  
    calcScores                              html  
    calcScoresParam                         html  
    combinedTable                           html  
    combinerCheck                           html  
    crossValFit                             html  
    datasets                                html  
    detectFields                            html  
    evaluateParams                          html  
    featdata                                html  
    filterAnchors                           html  
    filterRT                                html  
    findDuplicates                          html  
    fit_gam                                 html  
    fit_loess                               html  
    fitgamParam                             html  
    fitloessParam                           html  
    getAnchors                              html  
    getCoefficients                         html  
    getData                                 html  
    getExtra                                html  
    getModel                                html  
    getSamples                              html  
    getStats                                html  
    iddata                                  html  
    identityAnchorSelection                 html  
    isCombinedTable                         html  
    isMetabCombiner                         html  
    isMetabData                             html  
    iterativeAnchorSelection                html  
    labelRows                               html  
    labelRowsParam                          html  
    metabBatches                            html  
    metabCombine                            html  
    metabCombiner-class                     html  
    metabCombiner                           html  
    metabData-class                         html  
    metabData                               html  
    mzGroup                                 html  
    mzdata                                  html  
    nonmatched                              html  
    objective                               html  
    plasma20                                html  
    plasma30                                html  
    plot_fit                                html  
    rtdata                                  html  
    scorePairs                              html  
    selectAnchors                           html  
    selectAnchorsParam                      html  
    write2file                              html  
    x                                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'metabCombiner' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c binByMZ.c -o binByMZ.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c findDuplicates.c -o findDuplicates.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c labelRows.c -o labelRows.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c metabCombiner_init.c -o metabCombiner_init.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c resolveRows.c -o resolveRows.o
resolveRows.c: In function 'resolveRows':
resolveRows.c:250:6: warning: variable 'sgnum' set but not used [-Wunused-but-set-variable]
  int sgnum = 0;
      ^~~~~
resolveRows.c:249:14: warning: unused variable 'filename' [-Wunused-variable]
  const char *filename = "output.txt";
              ^~~~~~~~
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c selectAnchors.c -o selectAnchors.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c write2file.c -o write2file.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o metabCombiner.dll tmp.def binByMZ.o findDuplicates.o labelRows.o metabCombiner_init.o resolveRows.o selectAnchors.o write2file.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/metabCombiner.buildbin-libdir/metabCombiner/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'metabCombiner' as metabCombiner_1.4.0.zip
* DONE (metabCombiner)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'metabCombiner' successfully unpacked and MD5 sums checked