Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:42 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for hmdbQuery on tokay2


To the developers/maintainers of the hmdbQuery package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/hmdbQuery.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 880/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
hmdbQuery 1.14.2  (landing page)
VJ Carey
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/hmdbQuery
git_branch: RELEASE_3_14
git_last_commit: 147a8b2
git_last_commit_date: 2022-01-05 14:08:06 -0400 (Wed, 05 Jan 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: hmdbQuery
Version: 1.14.2
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/hmdbQuery_1.14.2.tar.gz && rm -rf hmdbQuery.buildbin-libdir && mkdir hmdbQuery.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=hmdbQuery.buildbin-libdir hmdbQuery_1.14.2.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL hmdbQuery_1.14.2.zip && rm hmdbQuery_1.14.2.tar.gz hmdbQuery_1.14.2.zip
StartedAt: 2022-04-12 04:37:53 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 04:38:32 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 39.0 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/hmdbQuery_1.14.2.tar.gz && rm -rf hmdbQuery.buildbin-libdir && mkdir hmdbQuery.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=hmdbQuery.buildbin-libdir hmdbQuery_1.14.2.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL hmdbQuery_1.14.2.zip && rm hmdbQuery_1.14.2.tar.gz hmdbQuery_1.14.2.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  515k  100  515k    0     0   766k      0 --:--:-- --:--:-- --:--:--  768k

install for i386

Warning in untar2(tarfile, files, list, exdir, restore_times) :
  failed to copy 'hmdbQuery/vignettes/hmdbQuery.Rmd' to 'hmdbQuery/README.md'
* installing *source* package 'hmdbQuery' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'hmdbQuery'
    finding HTML links ... done
    HmdbEntry-class                         html  
    HmdbEntry                               html  
    biospecimens-HmdbEntry-method           html  
    diseases-HmdbEntry-method               html  
    hmdb1                                   html  
    hmdb_disease                            html  
    hmdb_gene                               html  
    hmdb_omim                               html  
    hmdb_protein                            html  
    store-HmdbEntry-method                  html  
    tissues-HmdbEntry-method                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

Warning in untar2(tarfile, files, list, exdir, restore_times) :
  failed to copy 'hmdbQuery/vignettes/hmdbQuery.Rmd' to 'hmdbQuery/README.md'
* installing *source* package 'hmdbQuery' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'hmdbQuery' as hmdbQuery_1.14.2.zip
* DONE (hmdbQuery)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'hmdbQuery' successfully unpacked and MD5 sums checked