Multiple platform build/check report for BioC 3.14 - CHECK results for graper on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 20.04.4 LTS)	x86_64	4.1.3 (2022-03-10) -- "One Push-Up"	4324
tokay2	Windows Server 2012 R2 Standard	x64	4.1.3 (2022-03-10) -- "One Push-Up"	4077
machv2	macOS 10.14.6 Mojave	x86_64	4.1.3 (2022-03-10) -- "One Push-Up"	4137
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

Package: graper

Version: 1.10.0

Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings graper_1.10.0.tar.gz

StartedAt: 2022-04-12 07:41:46 -0400 (Tue, 12 Apr 2022)

EndedAt: 2022-04-12 07:42:38 -0400 (Tue, 12 Apr 2022)

EllapsedTime: 51.2 seconds

RetCode: 0

Status: OK

CheckDir: graper.Rcheck

Warnings: 0

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###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings graper_1.10.0.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.14-bioc/meat/graper.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  9.0Mb
  sub-directories of 1Mb or more:
    libs   8.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.14-bioc/meat/graper.Rcheck/00check.log’
for details.

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘graper’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c fit_graper.cpp -o fit_graper.o
In file included from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/lexical_cast.hpp:30,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/math/tools/lexical_cast.hpp:12,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/math/tools/convert_from_string.hpp:14,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/math/constants/constants.hpp:14,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/math/special_functions/digamma.hpp:20,
                 from graper_linear_dense_ff.h:2,
                 from fit_graper.cpp:4:
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
  194 | failed ************ (Pred::************
      |                     ^
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.14-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -L/home/biocbuild/bbs-3.14-bioc/R/lib -lRlapack -L/home/biocbuild/bbs-3.14-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.14-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.14-bioc/R/library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)


R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-857.383
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-567.077
ELB improved by 290.306

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-511.028
ELB improved by 56.0494

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-474.475
ELB improved by 36.553

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.442
ELB improved by 18.0328

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.734
ELB improved by 7.7075

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.983
ELB improved by 4.75159

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.857
ELB improved by 4.12571

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.741
ELB improved by 4.11656

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.492
ELB improved by 4.24851

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.305
ELB improved by 4.18705

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.588
ELB improved by 3.71689

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.661
ELB improved by 2.92732

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.529
ELB improved by 2.13171

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.986
ELB improved by 1.54278

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.817
ELB improved by 1.16888

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.876
ELB improved by 0.941051

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.073
ELB improved by 0.803218

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.354
ELB improved by 0.719263

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.688
ELB improved by 0.665543

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.059
ELB improved by 0.629768

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.452
ELB improved by 0.606922

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.858
ELB improved by 0.593248

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.274
ELB improved by 0.584354

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.698
ELB improved by 0.576042

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.133
ELB improved by 0.565412

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.581
ELB improved by 0.551766

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.044
ELB improved by 0.536534

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.522
ELB improved by 0.521971

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.013
ELB improved by 0.509795

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.512
ELB improved by 0.500612

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.018
ELB improved by 0.49395

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.53
ELB improved by 0.488501

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.047
ELB improved by 0.48243

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.573
ELB improved by 0.473734

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.113
ELB improved by 0.460668

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.671
ELB improved by 0.442209

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.252
ELB improved by 0.418499

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.861
ELB improved by 0.3912

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.497
ELB improved by 0.363564

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.157
ELB improved by 0.340099

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.831
ELB improved by 0.325796

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.507
ELB improved by 0.324341

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.174
ELB improved by 0.332846

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.841
ELB improved by 0.333457

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.539
ELB improved by 0.301626

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.299
ELB improved by 0.239798

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.123
ELB improved by 0.175897

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.996
ELB improved by 0.127382

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.901
ELB improved by 0.0949359

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.827
ELB improved by 0.0740097

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.766
ELB improved by 0.0607612

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.713
ELB improved by 0.0528776

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.664
ELB improved by 0.0491484

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.615
ELB improved by 0.0490411

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.563
ELB improved by 0.0522899

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.505
ELB improved by 0.0581623

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.441
ELB improved by 0.0642275

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.375
ELB improved by 0.0658396

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.316
ELB improved by 0.0591531

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.27
ELB improved by 0.0459441

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.237
ELB improved by 0.0321799

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.216
ELB improved by 0.0219081

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.2
ELB improved by 0.0155101

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.188
ELB improved by 0.0117908

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.179
ELB improved by 0.00959813

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-843.303
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-577.336
ELB improved by 265.968

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-516.289
ELB improved by 61.0464

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-473.37
ELB improved by 42.919

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.731
ELB improved by 19.639

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.359
ELB improved by 9.37166

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.226
ELB improved by 6.13301

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.379
ELB improved by 4.84732

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.087
ELB improved by 4.29215

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.255
ELB improved by 3.83201

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.999
ELB improved by 3.25623

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.404
ELB improved by 2.59427

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.435
ELB improved by 1.96941

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.962
ELB improved by 1.47302

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.842
ELB improved by 1.11973

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.964
ELB improved by 0.878531

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.253
ELB improved by 0.710884

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.665
ELB improved by 0.58751

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.174
ELB improved by 0.491176

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.76
ELB improved by 0.413862

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.408
ELB improved by 0.352162

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.104
ELB improved by 0.303885

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.837
ELB improved by 0.266899

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.598
ELB improved by 0.23915

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.379
ELB improved by 0.218826

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.175
ELB improved by 0.204343

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.981
ELB improved by 0.194193

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.794
ELB improved by 0.186808

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.613
ELB improved by 0.180637

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.439
ELB improved by 0.174519

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.271
ELB improved by 0.168072

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.109
ELB improved by 0.161661

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.953
ELB improved by 0.155898

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.802
ELB improved by 0.151193

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.654
ELB improved by 0.147664

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.509
ELB improved by 0.145269

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.365
ELB improved by 0.143953

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.222
ELB improved by 0.143735

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.077
ELB improved by 0.144744

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.929
ELB improved by 0.147281

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.778
ELB improved by 0.151909

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.618
ELB improved by 0.15963

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.446
ELB improved by 0.172205

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.253
ELB improved by 0.19273

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.026
ELB improved by 0.226584

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.744
ELB improved by 0.282112

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.377
ELB improved by 0.367777

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.895
ELB improved by 0.481528

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.289
ELB improved by 0.605949

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.561
ELB improved by 0.727586

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.716
ELB improved by 0.845763

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.743
ELB improved by 0.972675

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.605
ELB improved by 1.13773

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.236
ELB improved by 1.36926

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.607
ELB improved by 1.629

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.871
ELB improved by 1.73593

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.28
ELB improved by 1.59159

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.964
ELB improved by 1.31568

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.925
ELB improved by 1.03884

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.104
ELB improved by 0.820664

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.45
ELB improved by 0.65469

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.935
ELB improved by 0.51488

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.535
ELB improved by 0.400125

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.209
ELB improved by 0.325536

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.911
ELB improved by 0.297829

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.599
ELB improved by 0.312426

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.259
ELB improved by 0.33942

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.946
ELB improved by 0.313233

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.717
ELB improved by 0.229573

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.563
ELB improved by 0.153577

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.45
ELB improved by 0.113081

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.345
ELB improved by 0.104566

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.22
ELB improved by 0.125784

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.041
ELB improved by 0.178552

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.802
ELB improved by 0.238861

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.562
ELB improved by 0.240258

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.375
ELB improved by 0.187227

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.22
ELB improved by 0.155068

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.038
ELB improved by 0.181166

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.742
ELB improved by 0.296568

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.231
ELB improved by 0.510874

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.615
ELB improved by 0.616021

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.214
ELB improved by 0.400796

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.994
ELB improved by 0.220417

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.849
ELB improved by 0.144447

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.753
ELB improved by 0.096417

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.691
ELB improved by 0.06215

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.65
ELB improved by 0.0403203

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.623
ELB improved by 0.0275053

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.603
ELB improved by 0.0202142

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.587
ELB improved by 0.0161391

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.573
ELB improved by 0.0139681

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.56
ELB improved by 0.0130032

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.547
ELB improved by 0.0129052

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.533
ELB improved by 0.0135558

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.518
ELB improved by 0.0149926

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.501
ELB improved by 0.0173851

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.48
ELB improved by 0.0210334

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.453
ELB improved by 0.0263644

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.42
ELB improved by 0.0338963

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.375
ELB improved by 0.0441068

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.318
ELB improved by 0.0570397

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.247
ELB improved by 0.0712586

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.165
ELB improved by 0.0820938

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.083
ELB improved by 0.0820485

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.015
ELB improved by 0.0678297

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.969
ELB improved by 0.0463355

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.941
ELB improved by 0.0274412

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.926
ELB improved by 0.0151562

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.918
ELB improved by 0.00844981

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-908.727
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-584.354
ELB improved by 324.374

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-521.745
ELB improved by 62.6087

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-481.791
ELB improved by 39.9538

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-465.01
ELB improved by 16.7812

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.444
ELB improved by 7.56597

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.933
ELB improved by 5.5107

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.696
ELB improved by 5.23737

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.2
ELB improved by 5.49625

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.578
ELB improved by 5.62196

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.479
ELB improved by 5.09923

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.565
ELB improved by 3.91378

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.946
ELB improved by 2.61921

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.277
ELB improved by 1.66843

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.179
ELB improved by 1.09827

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.404
ELB improved by 0.775071

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.819
ELB improved by 0.584588

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.356
ELB improved by 0.463151

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.974
ELB improved by 0.382411

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.644
ELB improved by 0.32991

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.346
ELB improved by 0.298211

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.063
ELB improved by 0.282539

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.782
ELB improved by 0.280992

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.487
ELB improved by 0.295066

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.155
ELB improved by 0.33169

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.745
ELB improved by 0.410245

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.171
ELB improved by 0.574113

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.339
ELB improved by 0.832308

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.39
ELB improved by 0.948791

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.587
ELB improved by 0.802961

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.918
ELB improved by 0.669287

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.267
ELB improved by 0.650984

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.509
ELB improved by 0.757614

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.471
ELB improved by 1.03782

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.103
ELB improved by 1.36805

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.761
ELB improved by 1.34263

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.656
ELB improved by 1.10445

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.767
ELB improved by 0.889146

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.058
ELB improved by 0.708448

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.503
ELB improved by 0.555098

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.073
ELB improved by 0.430015

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.74
ELB improved by 0.333293

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.479
ELB improved by 0.260916

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.273
ELB improved by 0.206634

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.108
ELB improved by 0.164724

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.976
ELB improved by 0.131394

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.872
ELB improved by 0.104648

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.788
ELB improved by 0.0834241

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.721
ELB improved by 0.0668685

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.667
ELB improved by 0.0541087

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.623
ELB improved by 0.0443065

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.586
ELB improved by 0.0367463

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.555
ELB improved by 0.0308658

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.529
ELB improved by 0.0262429

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.507
ELB improved by 0.0225674

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.487
ELB improved by 0.019612

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.47
ELB improved by 0.0172101

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.455
ELB improved by 0.015238

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.441
ELB improved by 0.0136032

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.429
ELB improved by 0.0122357

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.418
ELB improved by 0.011082

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.408
ELB improved by 0.0101008

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.398
ELB improved by 0.00925964

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-854.262
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-580.048
ELB improved by 274.214

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-522.132
ELB improved by 57.9163

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-485.952
ELB improved by 36.1793

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-468.24
ELB improved by 17.7128

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.371
ELB improved by 8.86876

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.899
ELB improved by 5.47211

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.381
ELB improved by 4.51774

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.077
ELB improved by 4.30364

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.979
ELB improved by 4.09848

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.281
ELB improved by 3.69828

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.09
ELB improved by 3.1911

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.391
ELB improved by 2.69895

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.234
ELB improved by 2.15655

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.679
ELB improved by 1.55517

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.619
ELB improved by 1.05955

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.885
ELB improved by 0.733894

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.349
ELB improved by 0.536652

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.933
ELB improved by 0.415275

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.598
ELB improved by 0.335722

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.318
ELB improved by 0.27973

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.08
ELB improved by 0.237922

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.875
ELB improved by 0.205336

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.696
ELB improved by 0.179164

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.538
ELB improved by 0.157694

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.398
ELB improved by 0.139803

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.273
ELB improved by 0.124711

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.162
ELB improved by 0.111853

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.061
ELB improved by 0.100806

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.97
ELB improved by 0.0912458

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.887
ELB improved by 0.0829193

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.811
ELB improved by 0.0756258

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.742
ELB improved by 0.0692043

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.678
ELB improved by 0.0635244

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.62
ELB improved by 0.0584795

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.566
ELB improved by 0.053982

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.516
ELB improved by 0.0499591

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.469
ELB improved by 0.0463502

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.426
ELB improved by 0.0431045

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.386
ELB improved by 0.0401791

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.349
ELB improved by 0.0375378

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.313
ELB improved by 0.0351502

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.28
ELB improved by 0.0329904

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.249
ELB improved by 0.0310365

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.22
ELB improved by 0.0292702

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.193
ELB improved by 0.0276762

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.166
ELB improved by 0.0262422

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.141
ELB improved by 0.0249581

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.117
ELB improved by 0.0238165

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.095
ELB improved by 0.022812

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.073
ELB improved by 0.0219415

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.052
ELB improved by 0.0212036

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.031
ELB improved by 0.0205983

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.011
ELB improved by 0.0201263

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.991
ELB improved by 0.0197875

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.971
ELB improved by 0.0195794

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.952
ELB improved by 0.0194932

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.932
ELB improved by 0.0195103

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.913
ELB improved by 0.0195974

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.893
ELB improved by 0.0197026

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.873
ELB improved by 0.0197555

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.854
ELB improved by 0.019673

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.834
ELB improved by 0.0193738

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.816
ELB improved by 0.0187987

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.798
ELB improved by 0.0179295

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.781
ELB improved by 0.0167989

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.765
ELB improved by 0.0154827

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.751
ELB improved by 0.0140802

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.739
ELB improved by 0.0126891

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.727
ELB improved by 0.0113865

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.717
ELB improved by 0.0102198

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.708
ELB improved by 0.00920867

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  2.204   0.136   2.323

name	user	system	elapsed
coef.graper	0.054	0.004	0.059
getPIPs	0.040	0.011	0.052
graper	0.078	0.004	0.083
makeExampleData	0.010	0.000	0.011
makeExampleDataWithUnequalGroups	0.012	0.000	0.013
plotELBO	0.179	0.032	0.211
plotGroupPenalties	0.464	0.008	0.471
plotPosterior	0.739	0.016	0.754
predict.graper	1.901	0.016	1.917
print.graper	0.045	0.004	0.048

CHECK results for graper on nebbiolo2

Summary

Command output

Installation output

Tests output

Example timings