Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:07:20 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for SeqSQC on tokay2


To the developers/maintainers of the SeqSQC package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SeqSQC.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1772/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SeqSQC 1.16.0  (landing page)
Qian Liu
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/SeqSQC
git_branch: RELEASE_3_14
git_last_commit: 82e840a
git_last_commit_date: 2021-10-26 12:39:31 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: SeqSQC
Version: 1.16.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/SeqSQC_1.16.0.tar.gz && rm -rf SeqSQC.buildbin-libdir && mkdir SeqSQC.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SeqSQC.buildbin-libdir SeqSQC_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL SeqSQC_1.16.0.zip && rm SeqSQC_1.16.0.tar.gz SeqSQC_1.16.0.zip
StartedAt: 2022-04-12 06:15:22 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:16:46 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 84.3 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/SeqSQC_1.16.0.tar.gz && rm -rf SeqSQC.buildbin-libdir && mkdir SeqSQC.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SeqSQC.buildbin-libdir SeqSQC_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL SeqSQC_1.16.0.zip && rm SeqSQC_1.16.0.tar.gz SeqSQC_1.16.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 29 3067k   29  889k    0     0  1084k      0  0:00:02 --:--:--  0:00:02 1084k
 89 3067k   89 2747k    0     0  1510k      0  0:00:02  0:00:01  0:00:01 1511k
100 3067k  100 3067k    0     0  1502k      0  0:00:02  0:00:02 --:--:-- 1503k

install for i386

* installing *source* package 'SeqSQC' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SeqSQC'
    finding HTML links ... done
    CCDS.Hs37.3.reduced_chr1.bed            html  
    IBDCheck                                html  
    IBDRemove                               html  
    Inbreeding                              html  
    LoadVfile                               html  
    MissingRate                             html  
    PCACheck                                html  
    RenderReport                            html  
    SeqOpen                                 html  
    SeqSQC-class                            html  
    SeqSQC-package                          html  
    SexCheck                                html  
    example.gds                             html  
    example.seqfile.Rdata                   html  
    example_sub.vcf                         html  
    plotQC                                  html  
    problemList                             html  
    sampleAnnotation.txt                    html  
    sampleQC                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SeqSQC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SeqSQC' as SeqSQC_1.16.0.zip
* DONE (SeqSQC)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'SeqSQC' successfully unpacked and MD5 sums checked