Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:07:22 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for SIM on tokay2


To the developers/maintainers of the SIM package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SIM.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1796/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SIM 1.64.0  (landing page)
Renee X. de Menezes
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/SIM
git_branch: RELEASE_3_14
git_last_commit: 8ae32c9
git_last_commit_date: 2021-10-26 11:52:31 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: SIM
Version: 1.64.0
Command: rm -rf SIM.buildbin-libdir && mkdir SIM.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SIM.buildbin-libdir SIM_1.64.0.tar.gz
StartedAt: 2022-04-13 07:08:58 -0400 (Wed, 13 Apr 2022)
EndedAt: 2022-04-13 07:09:36 -0400 (Wed, 13 Apr 2022)
EllapsedTime: 38.4 seconds
RetCode: 0
Status:   OK  
PackageFile: SIM_1.64.0.zip
PackageFileSize: 579.3 KiB

Command output

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###
### Running command:
###
###   rm -rf SIM.buildbin-libdir && mkdir SIM.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SIM.buildbin-libdir SIM_1.64.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'SIM' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c withinWindow.c -o withinWindow.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o SIM.dll tmp.def withinWindow.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/SIM.buildbin-libdir/00LOCK-SIM/00new/SIM/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SIM'
    finding HTML links ... done
    RESOURCERER.annotation.to.ID            html  
    SIM-package                             html  
    acgh.data                               html  
    assemble.data                           html  
    chrom.table                             html  
    expr.data                               html  
    getoverlappingregions                   html  
    impute.nas.by.surrounding               html  
    integrated.analysis                     html  
    link.metadata                           html  
    samples                                 html  
    sim.plot.overlapping.indep.dep.features
                                            html  
    sim.plot.pvals.on.genome                html  
    sim.plot.pvals.on.region                html  
    sim.plot.zoom.in                        html  
    sim.plot.zscore.heatmap                 html  
    sim.update.chrom.table                  html  
    tabulate.pvals                          html  
    tabulate.top.dep.features               html  
    tabulate.top.indep.features             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SIM' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c withinWindow.c -o withinWindow.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o SIM.dll tmp.def withinWindow.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/SIM.buildbin-libdir/SIM/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SIM' as SIM_1.64.0.zip
* DONE (SIM)