Back to Multiple platform build/check report for BioC 3.14
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

This page was generated on 2022-04-13 12:07:19 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for SCnorm on tokay2


To the developers/maintainers of the SCnorm package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SCnorm.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1732/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SCnorm 1.16.0  (landing page)
Rhonda Bacher
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/SCnorm
git_branch: RELEASE_3_14
git_last_commit: d9a9166
git_last_commit_date: 2021-10-26 12:36:46 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: SCnorm
Version: 1.16.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/SCnorm_1.16.0.tar.gz && rm -rf SCnorm.buildbin-libdir && mkdir SCnorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SCnorm.buildbin-libdir SCnorm_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL SCnorm_1.16.0.zip && rm SCnorm_1.16.0.tar.gz SCnorm_1.16.0.zip
StartedAt: 2022-04-12 05:43:27 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 05:44:26 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 59.8 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/SCnorm_1.16.0.tar.gz && rm -rf SCnorm.buildbin-libdir && mkdir SCnorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SCnorm.buildbin-libdir SCnorm_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL SCnorm_1.16.0.zip && rm SCnorm_1.16.0.tar.gz SCnorm_1.16.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  1 2810k    1 36237    0     0   229k      0  0:00:12 --:--:--  0:00:12  229k
 34 2810k   34  975k    0     0   845k      0  0:00:03  0:00:01  0:00:02  845k
 98 2810k   98 2773k    0     0  1287k      0  0:00:02  0:00:02 --:--:-- 1287k
100 2810k  100 2810k    0     0  1303k      0  0:00:02  0:00:02 --:--:-- 1303k

install for i386

* installing *source* package 'SCnorm' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SCnorm'
    finding HTML links ... done
    ExampleSimSCData                        html  
    GetTD                                   html  
    SCnorm                                  html  
    SCnormFit                               html  
    correctWithin                           html  
    evaluateK                               html  
    generateEvalPlot                        html  
    getCounts                               html  
    getDens                                 html  
    getSlopes                               html  
    normWrapper                             html  
    plotCountDepth                          html  
    plotWithinFactor                        html  
    quickReg                                html  
    redoBox                                 html  
    results                                 html  
    scaleNormMultCont                       html  
    splitGroups                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SCnorm' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SCnorm' as SCnorm_1.16.0.zip
* DONE (SCnorm)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'SCnorm' successfully unpacked and MD5 sums checked