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This page was generated on 2022-04-13 12:07:17 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for SANTA on tokay2


To the developers/maintainers of the SANTA package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SANTA.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1693/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SANTA 2.30.0  (landing page)
Alex Cornish
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/SANTA
git_branch: RELEASE_3_14
git_last_commit: 968bc92
git_last_commit_date: 2021-10-26 13:06:56 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: SANTA
Version: 2.30.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/SANTA_2.30.0.tar.gz && rm -rf SANTA.buildbin-libdir && mkdir SANTA.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SANTA.buildbin-libdir SANTA_2.30.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL SANTA_2.30.0.zip && rm SANTA_2.30.0.tar.gz SANTA_2.30.0.zip
StartedAt: 2022-04-12 04:17:01 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 04:19:12 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 131.0 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/SANTA_2.30.0.tar.gz && rm -rf SANTA.buildbin-libdir && mkdir SANTA.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SANTA.buildbin-libdir SANTA_2.30.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL SANTA_2.30.0.zip && rm SANTA_2.30.0.tar.gz SANTA_2.30.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  2 4454k    2 92959    0     0   586k      0  0:00:07 --:--:--  0:00:07  585k
 79 4454k   79 3547k    0     0  3071k      0  0:00:01  0:00:01 --:--:-- 3071k
100 4454k  100 4454k    0     0  3236k      0  0:00:01  0:00:01 --:--:-- 3235k

install for i386

* installing *source* package 'SANTA' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c computenetK_fewzeros.c -o computenetK_fewzeros.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c computenodeAUK.c -o computenodeAUK.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c computeweights.c -o computeweights.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o SANTA.dll tmp.def computenetK_fewzeros.o computenodeAUK.o computeweights.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/SANTA.buildbin-libdir/00LOCK-SANTA/00new/SANTA/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SANTA'
    finding HTML links ... done
    BinGraph                                html  
    Compactness                             html  
    CreateGrid                              html  
    DistGraph                               html  
    GraphDiffusion                          html  
    GraphMFPT                               html  
    Knet                                    html  
    Knode                                   html  
    SANTA.data                              html  
    SpreadHits                              html  
    plot.Knet                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SANTA' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c computenetK_fewzeros.c -o computenetK_fewzeros.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c computenodeAUK.c -o computenodeAUK.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c computeweights.c -o computeweights.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o SANTA.dll tmp.def computenetK_fewzeros.o computenodeAUK.o computeweights.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/SANTA.buildbin-libdir/SANTA/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SANTA' as SANTA_2.30.0.zip
* DONE (SANTA)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'SANTA' successfully unpacked and MD5 sums checked