Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:07:13 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for Rhdf5lib on tokay2


To the developers/maintainers of the Rhdf5lib package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rhdf5lib.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1601/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rhdf5lib 1.16.0  (landing page)
Mike Smith
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/Rhdf5lib
git_branch: RELEASE_3_14
git_last_commit: 534c497
git_last_commit_date: 2021-10-26 12:36:08 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: Rhdf5lib
Version: 1.16.0
Command: rm -rf Rhdf5lib.buildbin-libdir && mkdir Rhdf5lib.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Rhdf5lib.buildbin-libdir Rhdf5lib_1.16.0.tar.gz
StartedAt: 2022-04-13 06:58:32 -0400 (Wed, 13 Apr 2022)
EndedAt: 2022-04-13 06:59:08 -0400 (Wed, 13 Apr 2022)
EllapsedTime: 35.1 seconds
RetCode: 0
Status:   OK  
PackageFile: Rhdf5lib_1.16.0.zip
PackageFileSize: 12.31 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf Rhdf5lib.buildbin-libdir && mkdir Rhdf5lib.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Rhdf5lib.buildbin-libdir Rhdf5lib_1.16.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'Rhdf5lib' ...
** using staged installation
untarring hdf5_headers_1.10.7.tar.gz ...
** libs
mkdir -p "C:/Users/biocbuild/bbs-3.14-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/" "C:/Users/biocbuild/bbs-3.14-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/include"
cp "winlib-8.3.0/i386/libhdf5.a" "C:/Users/biocbuild/bbs-3.14-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/libhdf5.a"
cp "winlib-8.3.0/i386/libhdf5_cpp.a" "C:/Users/biocbuild/bbs-3.14-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/libhdf5_cpp.a"
cp "winlib-8.3.0/i386/libhdf5_hl.a" "C:/Users/biocbuild/bbs-3.14-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/libhdf5_hl.a"
cp "winlib-8.3.0/i386/libhdf5_hl_cpp.a" "C:/Users/biocbuild/bbs-3.14-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/libhdf5_hl_cpp.a"
cp "winlib-8.3.0/i386/libszip.a" "C:/Users/biocbuild/bbs-3.14-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/libszip.a"
cp ./hdf5/*.h "C:/Users/biocbuild/bbs-3.14-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/include"
cp ./hdf5/c++/*.h "C:/Users/biocbuild/bbs-3.14-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/include"
cp ./hdf5/hl/*.h "C:/Users/biocbuild/bbs-3.14-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/include"
"C:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386/Rscript.exe" "../tools/winlibs.R" 7.64.1 C:/Users/biocbuild/bbs-3.14-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/i386/
Copying Winlibs
C:\Users\biocbuild\bbs-3.14-bioc\tmpdir\RtmpCy6WHF/libcurl
 [1] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpCy6WHF/libcurl/libcurl-7.64.1/README.md"                   
 [2] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpCy6WHF/libcurl/libcurl-7.64.1/include/curl/curl.h"         
 [3] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpCy6WHF/libcurl/libcurl-7.64.1/include/curl/curlver.h"      
 [4] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpCy6WHF/libcurl/libcurl-7.64.1/include/curl/easy.h"         
 [5] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpCy6WHF/libcurl/libcurl-7.64.1/include/curl/mprintf.h"      
 [6] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpCy6WHF/libcurl/libcurl-7.64.1/include/curl/multi.h"        
 [7] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpCy6WHF/libcurl/libcurl-7.64.1/include/curl/stdcheaders.h"  
 [8] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpCy6WHF/libcurl/libcurl-7.64.1/include/curl/system.h"       
 [9] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpCy6WHF/libcurl/libcurl-7.64.1/include/curl/typecheck-gcc.h"
[10] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpCy6WHF/libcurl/libcurl-7.64.1/include/curl/urlapi.h"       
[11] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpCy6WHF/libcurl/libcurl-7.64.1/lib/i386/libcrypto.a"        
[12] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpCy6WHF/libcurl/libcurl-7.64.1/lib/i386/libcurl.a"          
[13] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpCy6WHF/libcurl/libcurl-7.64.1/lib/i386/libssh2.a"          
[14] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpCy6WHF/libcurl/libcurl-7.64.1/lib/i386/libssl.a"           
[15] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpCy6WHF/libcurl/libcurl-7.64.1/lib/x64-ucrt/libcrypto.a"    
[16] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpCy6WHF/libcurl/libcurl-7.64.1/lib/x64-ucrt/libcurl.a"      
[17] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpCy6WHF/libcurl/libcurl-7.64.1/lib/x64-ucrt/libssh2.a"      
[18] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpCy6WHF/libcurl/libcurl-7.64.1/lib/x64-ucrt/libssl.a"       
[19] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpCy6WHF/libcurl/libcurl-7.64.1/lib/x64/libcrypto.a"         
[20] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpCy6WHF/libcurl/libcurl-7.64.1/lib/x64/libcurl.a"           
[21] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpCy6WHF/libcurl/libcurl-7.64.1/lib/x64/libssh2.a"           
[22] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpCy6WHF/libcurl/libcurl-7.64.1/lib/x64/libssl.a"            
C:\Users\biocbuild\bbs-3.14-bioc\tmpdir\RtmpCy6WHF/libcurl/libcurl-7.64.1/lib/i386/libcrypto.aC:\Users\biocbuild\bbs-3.14-bioc\tmpdir\RtmpCy6WHF/libcurl/libcurl-7.64.1/lib/i386/libcurl.aC:\Users\biocbuild\bbs-3.14-bioc\tmpdir\RtmpCy6WHF/libcurl/libcurl-7.64.1/lib/i386/libssh2.aC:\Users\biocbuild\bbs-3.14-bioc\tmpdir\RtmpCy6WHF/libcurl/libcurl-7.64.1/lib/i386/libssl.a
ARCH: i386/
[[1]]
[1] TRUE

[[2]]
[1] TRUE

[[3]]
[1] TRUE

[[4]]
[1] TRUE

"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I./hdf5   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c Rhdf5lib.c -o Rhdf5lib.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o Rhdf5lib.dll tmp.def Rhdf5lib.o winlib-8.3.0//i386/libhdf5.a winlib-8.3.0//i386/libszip.a -lpsapi -lz -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Rhdf5lib'
    finding HTML links ... done
    Rhdf5lib                                html  
    dot-curlStatus                          html  
    dot-getDynamicLinks                     html  
    getHdf5Version                          html  
    pkgconfig                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Rhdf5lib' ...
untarring hdf5_headers_1.10.7.tar.gz ...
** libs
mkdir -p "C:/Users/biocbuild/bbs-3.14-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/" "C:/Users/biocbuild/bbs-3.14-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include"
cp "winlib-8.3.0/x64/libhdf5.a" "C:/Users/biocbuild/bbs-3.14-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libhdf5.a"
cp "winlib-8.3.0/x64/libhdf5_cpp.a" "C:/Users/biocbuild/bbs-3.14-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libhdf5_cpp.a"
cp "winlib-8.3.0/x64/libhdf5_hl.a" "C:/Users/biocbuild/bbs-3.14-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libhdf5_hl.a"
cp "winlib-8.3.0/x64/libhdf5_hl_cpp.a" "C:/Users/biocbuild/bbs-3.14-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libhdf5_hl_cpp.a"
cp "winlib-8.3.0/x64/libszip.a" "C:/Users/biocbuild/bbs-3.14-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libszip.a"
cp ./hdf5/*.h "C:/Users/biocbuild/bbs-3.14-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include"
cp ./hdf5/c++/*.h "C:/Users/biocbuild/bbs-3.14-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include"
cp ./hdf5/hl/*.h "C:/Users/biocbuild/bbs-3.14-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include"
"C:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64/Rscript.exe" "../tools/winlibs.R" 7.64.1 C:/Users/biocbuild/bbs-3.14-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/
Copying Winlibs
C:\Users\biocbuild\bbs-3.14-bioc\tmpdir\RtmpMTItwc/libcurl
 [1] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpMTItwc/libcurl/libcurl-7.64.1/README.md"                   
 [2] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpMTItwc/libcurl/libcurl-7.64.1/include/curl/curl.h"         
 [3] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpMTItwc/libcurl/libcurl-7.64.1/include/curl/curlver.h"      
 [4] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpMTItwc/libcurl/libcurl-7.64.1/include/curl/easy.h"         
 [5] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpMTItwc/libcurl/libcurl-7.64.1/include/curl/mprintf.h"      
 [6] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpMTItwc/libcurl/libcurl-7.64.1/include/curl/multi.h"        
 [7] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpMTItwc/libcurl/libcurl-7.64.1/include/curl/stdcheaders.h"  
 [8] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpMTItwc/libcurl/libcurl-7.64.1/include/curl/system.h"       
 [9] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpMTItwc/libcurl/libcurl-7.64.1/include/curl/typecheck-gcc.h"
[10] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpMTItwc/libcurl/libcurl-7.64.1/include/curl/urlapi.h"       
[11] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpMTItwc/libcurl/libcurl-7.64.1/lib/i386/libcrypto.a"        
[12] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpMTItwc/libcurl/libcurl-7.64.1/lib/i386/libcurl.a"          
[13] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpMTItwc/libcurl/libcurl-7.64.1/lib/i386/libssh2.a"          
[14] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpMTItwc/libcurl/libcurl-7.64.1/lib/i386/libssl.a"           
[15] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpMTItwc/libcurl/libcurl-7.64.1/lib/x64-ucrt/libcrypto.a"    
[16] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpMTItwc/libcurl/libcurl-7.64.1/lib/x64-ucrt/libcurl.a"      
[17] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpMTItwc/libcurl/libcurl-7.64.1/lib/x64-ucrt/libssh2.a"      
[18] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpMTItwc/libcurl/libcurl-7.64.1/lib/x64-ucrt/libssl.a"       
[19] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpMTItwc/libcurl/libcurl-7.64.1/lib/x64/libcrypto.a"         
[20] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpMTItwc/libcurl/libcurl-7.64.1/lib/x64/libcurl.a"           
[21] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpMTItwc/libcurl/libcurl-7.64.1/lib/x64/libssh2.a"           
[22] "C:\\Users\\biocbuild\\bbs-3.14-bioc\\tmpdir\\RtmpMTItwc/libcurl/libcurl-7.64.1/lib/x64/libssl.a"            
C:\Users\biocbuild\bbs-3.14-bioc\tmpdir\RtmpMTItwc/libcurl/libcurl-7.64.1/lib/x64/libcrypto.aC:\Users\biocbuild\bbs-3.14-bioc\tmpdir\RtmpMTItwc/libcurl/libcurl-7.64.1/lib/x64/libcurl.aC:\Users\biocbuild\bbs-3.14-bioc\tmpdir\RtmpMTItwc/libcurl/libcurl-7.64.1/lib/x64/libssh2.aC:\Users\biocbuild\bbs-3.14-bioc\tmpdir\RtmpMTItwc/libcurl/libcurl-7.64.1/lib/x64/libssl.a
ARCH: x64/
[[1]]
[1] TRUE

[[2]]
[1] TRUE

[[3]]
[1] TRUE

[[4]]
[1] TRUE

"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I./hdf5   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c Rhdf5lib.c -o Rhdf5lib.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o Rhdf5lib.dll tmp.def Rhdf5lib.o winlib-8.3.0//x64/libhdf5.a winlib-8.3.0//x64/libszip.a -lpsapi -lz -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Rhdf5lib' as Rhdf5lib_1.16.0.zip
* DONE (Rhdf5lib)