Qinglin Mei
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/RCSL |
| git_branch: RELEASE_3_14 |
| git_last_commit: 40bea04 |
| git_last_commit_date: 2021-10-26 13:10:37 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:11 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the RCSL package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RCSL.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1548/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RCSL 1.2.0 (landing page) Qinglin Mei
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: RCSL |
| Version: 1.2.0 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RCSL.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings RCSL_1.2.0.tar.gz |
| StartedAt: 2022-04-13 01:19:14 -0400 (Wed, 13 Apr 2022) |
| EndedAt: 2022-04-13 01:34:54 -0400 (Wed, 13 Apr 2022) |
| EllapsedTime: 939.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RCSL.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RCSL.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings RCSL_1.2.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/RCSL.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RCSL/DESCRIPTION' ... OK
* this is package 'RCSL' version '1.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RCSL' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
'RcppAnnoy'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
PlotMST: no visible binding for global variable 'X1'
PlotMST: no visible binding for global variable 'X2'
PlotMST: no visible binding for global variable 'label'
PlotMST: no visible binding for global variable 'from.x'
PlotMST: no visible binding for global variable 'to.x'
PlotMST: no visible binding for global variable 'from.y'
PlotMST: no visible binding for global variable 'to.y'
PlotMST: no visible binding for global variable 'V1'
PlotMST: no visible binding for global variable 'V2'
PlotPseudoTime: no visible binding for global variable 'x'
PlotPseudoTime: no visible binding for global variable 'y'
PlotPseudoTime: no visible binding for global variable 'Timepoint'
PlotTrajectory: no visible binding for global variable 'X1'
PlotTrajectory: no visible binding for global variable 'X2'
PlotTrajectory: no visible binding for global variable 'label'
PlotTrajectory: no visible binding for global variable 'x'
PlotTrajectory: no visible binding for global variable 'y'
Undefined global functions or variables:
Timepoint V1 V2 X1 X2 from.x from.y label to.x to.y x y
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
BDSM 54.38 0.14 54.52
PlotTrajectory 42.02 0.19 42.20
TrajectoryAnalysis 41.00 0.20 41.20
EstClusters 40.46 0.14 40.65
SimS 39.35 0.14 39.84
PlotPseudoTime 37.26 0.15 37.44
PlotMST 36.72 0.07 36.78
GenesFilter 35.80 0.21 36.00
NeigRepresent 35.84 0.04 35.89
getLineage 35.39 0.03 35.43
RCSL 11.06 0.24 11.35
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
TrajectoryAnalysis 47.00 0.08 47.61
PlotMST 45.53 0.12 45.66
EstClusters 42.71 0.05 42.77
BDSM 41.50 0.16 42.08
getLineage 40.64 0.01 40.66
PlotTrajectory 39.92 0.08 40.00
PlotPseudoTime 39.73 0.09 39.88
NeigRepresent 39.52 0.08 39.59
GenesFilter 38.44 0.25 38.69
SimS 36.95 0.11 37.06
RCSL 11.91 0.22 12.12
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.14-bioc/meat/RCSL.Rcheck/00check.log'
for details.
RCSL.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/RCSL_1.2.0.tar.gz && rm -rf RCSL.buildbin-libdir && mkdir RCSL.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RCSL.buildbin-libdir RCSL_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL RCSL_1.2.0.zip && rm RCSL_1.2.0.tar.gz RCSL_1.2.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
49 1618k 49 801k 0 0 1631k 0 --:--:-- --:--:-- --:--:-- 1632k
100 1618k 100 1618k 0 0 2137k 0 --:--:-- --:--:-- --:--:-- 2137k
install for i386
* installing *source* package 'RCSL' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'RCSL'
finding HTML links ... done
BDSM html
EProjSimplexdiag html
EstClusters html
EucDist html
GenesFilter html
NeigRepresent html
PlotMST html
PlotPseudoTime html
PlotTrajectory html
RCSL html
SimS html
TrajectoryAnalysis html
ann html
getLineage html
yan html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'RCSL' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RCSL' as RCSL_1.2.0.zip
* DONE (RCSL)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'RCSL' successfully unpacked and MD5 sums checked
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RCSL.Rcheck/examples_i386/RCSL-Ex.timings
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RCSL.Rcheck/examples_x64/RCSL-Ex.timings
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