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This page was generated on 2022-04-13 12:07:02 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for OrganismDbi on tokay2


To the developers/maintainers of the OrganismDbi package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OrganismDbi.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1351/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OrganismDbi 1.36.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/OrganismDbi
git_branch: RELEASE_3_14
git_last_commit: 3e7a90d
git_last_commit_date: 2021-10-26 12:04:26 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    ERROR  
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: OrganismDbi
Version: 1.36.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/OrganismDbi_1.36.0.tar.gz && rm -rf OrganismDbi.buildbin-libdir && mkdir OrganismDbi.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OrganismDbi.buildbin-libdir OrganismDbi_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL OrganismDbi_1.36.0.zip && rm OrganismDbi_1.36.0.tar.gz OrganismDbi_1.36.0.zip
StartedAt: 2022-04-12 06:11:52 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:13:26 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 93.8 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/OrganismDbi_1.36.0.tar.gz && rm -rf OrganismDbi.buildbin-libdir && mkdir OrganismDbi.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OrganismDbi.buildbin-libdir OrganismDbi_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL OrganismDbi_1.36.0.zip && rm OrganismDbi_1.36.0.tar.gz OrganismDbi_1.36.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 58633  100 58633    0     0   359k      0 --:--:-- --:--:-- --:--:--  362k

install for i386

* installing *source* package 'OrganismDbi' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'OrganismDbi'
    finding HTML links ... done
    OrganismDb                              html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp6zr1dD/R.INSTALL25f431a2a03/OrganismDbi/man/OrganismDb.Rd:191: missing link 'GenomeInfoDb'
    coordinate-mapping-method               html  
    makeOrganismDbFromBiomart               html  
    makeOrganismDbFromTxDb                  html  
    makeOrganismDbFromUCSC                  html  
    makeOrganismPackage                     html  
    rangeBasedAccessors                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'OrganismDbi' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'OrganismDbi' as OrganismDbi_1.36.0.zip
* DONE (OrganismDbi)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'OrganismDbi' successfully unpacked and MD5 sums checked