Back to Multiple platform build/check report for BioC 3.14
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2022-04-13 12:06:49 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for MAGeCKFlute on tokay2


To the developers/maintainers of the MAGeCKFlute package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MAGeCKFlute.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1036/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MAGeCKFlute 1.14.0  (landing page)
Wubing Zhang
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/MAGeCKFlute
git_branch: RELEASE_3_14
git_last_commit: e03a467
git_last_commit_date: 2021-10-26 12:40:34 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: MAGeCKFlute
Version: 1.14.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MAGeCKFlute_1.14.0.tar.gz && rm -rf MAGeCKFlute.buildbin-libdir && mkdir MAGeCKFlute.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MAGeCKFlute.buildbin-libdir MAGeCKFlute_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MAGeCKFlute_1.14.0.zip && rm MAGeCKFlute_1.14.0.tar.gz MAGeCKFlute_1.14.0.zip
StartedAt: 2022-04-12 07:06:08 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 07:09:36 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 208.2 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MAGeCKFlute_1.14.0.tar.gz && rm -rf MAGeCKFlute.buildbin-libdir && mkdir MAGeCKFlute.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MAGeCKFlute.buildbin-libdir MAGeCKFlute_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MAGeCKFlute_1.14.0.zip && rm MAGeCKFlute_1.14.0.tar.gz MAGeCKFlute_1.14.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 15 9881k   15 1497k    0     0  2182k      0  0:00:04 --:--:--  0:00:04 2182k
 53 9881k   53 5242k    0     0  3117k      0  0:00:03  0:00:01  0:00:02 3117k
100 9881k  100 9881k    0     0  3726k      0  0:00:02  0:00:02 --:--:-- 3727k

install for i386

* installing *source* package 'MAGeCKFlute' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MAGeCKFlute'
    finding HTML links ... done
    BarView                                 html  
    BatchRemove                             html  
    ConsistencyView                         html  
    CutoffCalling                           html  
    DensityDiffView                         html  
    DensityView                             html  
    EnrichAB                                html  
    EnrichAnalyzer                          html  
    EnrichSquare                            html  
    EnrichedFilter                          html  
    EnrichedGeneView                        html  
    EnrichedView                            html  
    FluteMLE                                html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/MAGeCKFlute.buildbin-libdir/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/flutemle.html
    FluteRRA                                html  
    HeatmapView                             html  
    IdentBarView                            html  
    IncorporateDepmap                       html  
    MAView                                  html  
    MapRatesView                            html  
    NormalizeBeta                           html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/MAGeCKFlute.buildbin-libdir/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/normalizebeta.html
    OmitCommonEssential                     html  
    RankView                                html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/MAGeCKFlute.buildbin-libdir/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/rankview.html
    ReadBeta                                html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/MAGeCKFlute.buildbin-libdir/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/readbeta.html
    ReadGMT                                 html  
    ReadRRA                                 html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/MAGeCKFlute.buildbin-libdir/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/readrra.html
    ReadsgRRA                               html  
    ResembleDepmap                          html  
    ScatterView                             html  
    Selector                                html  
    SquareView                              html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/MAGeCKFlute.buildbin-libdir/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/squareview.html
    TransGeneID                             html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/MAGeCKFlute.buildbin-libdir/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/transGeneID.html
    ViolinView                              html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/MAGeCKFlute.buildbin-libdir/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/violinview.html
    VolcanoView                             html  
    arrangePathview                         html  
    enrich.GSE                              html  
    enrich.HGT                              html  
    enrich.ORT                              html  
    getCols                                 html  
    getGeneAnn                              html  
    getOrg                                  html  
    getOrtAnn                               html  
    gsGetter                                html  
    hclustView                              html  
    noEnrichPlot                            html  
    normalize.loess                         html  
    reexports                               html  
    retrieve_gs                             html  
    sgRankView                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MAGeCKFlute' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MAGeCKFlute' as MAGeCKFlute_1.14.0.zip
* DONE (MAGeCKFlute)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'MAGeCKFlute' successfully unpacked and MD5 sums checked