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This page was generated on 2022-04-13 12:06:48 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for LOLA on tokay2


To the developers/maintainers of the LOLA package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/LOLA.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1011/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
LOLA 1.24.0  (landing page)
Nathan Sheffield
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/LOLA
git_branch: RELEASE_3_14
git_last_commit: 31e3a51
git_last_commit_date: 2021-10-26 12:22:25 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: LOLA
Version: 1.24.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/LOLA_1.24.0.tar.gz && rm -rf LOLA.buildbin-libdir && mkdir LOLA.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LOLA.buildbin-libdir LOLA_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL LOLA_1.24.0.zip && rm LOLA_1.24.0.tar.gz LOLA_1.24.0.zip
StartedAt: 2022-04-12 04:46:32 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 04:48:07 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 94.6 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/LOLA_1.24.0.tar.gz && rm -rf LOLA.buildbin-libdir && mkdir LOLA.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LOLA.buildbin-libdir LOLA_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL LOLA_1.24.0.zip && rm LOLA_1.24.0.tar.gz LOLA_1.24.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 91  534k   91  490k    0     0  1024k      0 --:--:-- --:--:-- --:--:-- 1023k
100  534k  100  534k    0     0   694k      0 --:--:-- --:--:-- --:--:--  694k

install for i386

* installing *source* package 'LOLA' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'LOLA'
    finding HTML links ... done
    LOLA                                    html  
    buildRestrictedUniverse                 html  
    checkUniverseAppropriateness            html  
    cleanws                                 html  
    countOverlapsAnyRev                     html  
    extractEnrichmentOverlaps               html  
    getRegionFile                           html  
    getRegionSet                            html  
    lapplyAlias                             html  
    listRegionSets                          html  
    listToGRangesList                       html  
    loadRegionDB                            html  
    mergeRegionDBs                          html  
    nlist                                   html  
    plotTopLOLAEnrichments                  html  
    readBed                                 html  
    readCollection                          html  
    readCollectionAnnotation                html  
    readCollectionFiles                     html  
    readRegionGRL                           html  
    readRegionSetAnnotation                 html  
    redefineUserSets                        html  
    replaceFileExtension                    html  
    runLOLA                                 html  
    sampleGRL                               html  
    setLapplyAlias                          html  
    setSharedDataDir                        html  
    splitDataTable                          html  
    splitFileIntoCollection                 html  
    userSets                                html  
    userUniverse                            html  
    write.tsv                               html  
    writeCombinedEnrichment                 html  
    writeDataTableSplitByColumn             html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'LOLA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'LOLA' as LOLA_1.24.0.zip
* DONE (LOLA)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'LOLA' successfully unpacked and MD5 sums checked