| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:43 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the HumanTranscriptomeCompendium package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HumanTranscriptomeCompendium.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 891/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HumanTranscriptomeCompendium 1.10.0 (landing page) VJ Carey
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: HumanTranscriptomeCompendium |
| Version: 1.10.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/HumanTranscriptomeCompendium_1.10.0.tar.gz && rm -rf HumanTranscriptomeCompendium.buildbin-libdir && mkdir HumanTranscriptomeCompendium.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HumanTranscriptomeCompendium.buildbin-libdir HumanTranscriptomeCompendium_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL HumanTranscriptomeCompendium_1.10.0.zip && rm HumanTranscriptomeCompendium_1.10.0.tar.gz HumanTranscriptomeCompendium_1.10.0.zip |
| StartedAt: 2022-04-12 05:34:16 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 05:35:12 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 55.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/HumanTranscriptomeCompendium_1.10.0.tar.gz && rm -rf HumanTranscriptomeCompendium.buildbin-libdir && mkdir HumanTranscriptomeCompendium.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HumanTranscriptomeCompendium.buildbin-libdir HumanTranscriptomeCompendium_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL HumanTranscriptomeCompendium_1.10.0.zip && rm HumanTranscriptomeCompendium_1.10.0.tar.gz HumanTranscriptomeCompendium_1.10.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
10 2160k 10 221k 0 0 735k 0 0:00:02 --:--:-- 0:00:02 735k
90 2160k 90 1964k 0 0 1508k 0 0:00:01 0:00:01 --:--:-- 1508k
100 2160k 100 2160k 0 0 1565k 0 0:00:01 0:00:01 --:--:-- 1565k
install for i386
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'HumanTranscriptomeCompendium/vignettes/htxcomp.Rmd' to 'HumanTranscriptomeCompendium/README.md'
* installing *source* package 'HumanTranscriptomeCompendium' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'HumanTranscriptomeCompendium'
finding HTML links ... done
HumanTranscriptomeCompendium.colnames html
addRD html
ca43k html
get_ds4841 html
htx_app html
htx_load html
htx_query_by_study_accession html
htx_query_by_text html
load_bigrnaFiles html
load_experTable html
load_studTable html
path_doc4842 html
procExpToGene html
tx2gene_gencode27 html
uniqueAcc_120518 html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'HumanTranscriptomeCompendium/vignettes/htxcomp.Rmd' to 'HumanTranscriptomeCompendium/README.md'
* installing *source* package 'HumanTranscriptomeCompendium' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HumanTranscriptomeCompendium' as HumanTranscriptomeCompendium_1.10.0.zip
* DONE (HumanTranscriptomeCompendium)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'HumanTranscriptomeCompendium' successfully unpacked and MD5 sums checked