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This page was generated on 2022-04-13 12:06:42 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for HiCBricks on tokay2


To the developers/maintainers of the HiCBricks package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCBricks.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 866/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HiCBricks 1.12.0  (landing page)
Koustav Pal
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/HiCBricks
git_branch: RELEASE_3_14
git_last_commit: 595fc2b
git_last_commit_date: 2021-10-26 12:47:36 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: HiCBricks
Version: 1.12.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/HiCBricks_1.12.0.tar.gz && rm -rf HiCBricks.buildbin-libdir && mkdir HiCBricks.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HiCBricks.buildbin-libdir HiCBricks_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL HiCBricks_1.12.0.zip && rm HiCBricks_1.12.0.tar.gz HiCBricks_1.12.0.zip
StartedAt: 2022-04-12 06:35:30 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:38:05 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 155.2 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/HiCBricks_1.12.0.tar.gz && rm -rf HiCBricks.buildbin-libdir && mkdir HiCBricks.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HiCBricks.buildbin-libdir HiCBricks_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL HiCBricks_1.12.0.zip && rm HiCBricks_1.12.0.tar.gz HiCBricks_1.12.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 16 2314k   16  382k    0     0   666k      0  0:00:03 --:--:--  0:00:03  666k
 75 2314k   75 1740k    0     0  1112k      0  0:00:02  0:00:01  0:00:01 1113k
100 2314k  100 2314k    0     0  1260k      0  0:00:01  0:00:01 --:--:-- 1260k

install for i386

* installing *source* package 'HiCBricks' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'HiCBricks'
    finding HTML links ... done
    BrickContainer_change_experiment_name   html  
    BrickContainer_change_output_directory
                                            html  
    BrickContainer_get_path_to_file         html  
    BrickContainer_list_chromosomes         html  
    BrickContainer_list_experiment_name     html  
    BrickContainer_list_files               html  
    BrickContainer_list_output_directory    html  
    BrickContainer_list_resolutions         html  
    BrickContainer_unlink_resolution        html  
    Brick_add_ranges                        html  
    Brick_call_compartments                 html  
    Brick_export_to_sparse                  html  
    Brick_fetch_range_index                 html  
    Brick_fetch_row_vector                  html  
    Brick_get_bintable                      html  
    Brick_get_chrominfo                     html  
    Brick_get_entire_matrix                 html  
    Brick_get_matrix                        html  
    Brick_get_matrix_mcols                  html  
    Brick_get_matrix_within_coords          html  
    Brick_get_ranges                        html  
    Brick_get_values_by_distance            html  
    Brick_get_vector_values                 html  
    Brick_list_matrices                     html  
    Brick_list_matrix_mcols                 html  
    Brick_list_mcool_normalisations         html  
    Brick_list_mcool_resolutions            html  
    Brick_list_rangekeys                    html  
    Brick_list_ranges_mcols                 html  
    Brick_load_cis_matrix_till_distance     html  
    Brick_load_data_from_mcool              html  
    Brick_load_data_from_sparse             html  
    Brick_load_matrix                       html  
    Brick_local_score_differentiator        html  
    Brick_make_ranges                       html  
    Brick_matrix_dimensions                 html  
    Brick_matrix_exists                     html  
    Brick_matrix_filename                   html  
    Brick_matrix_isdone                     html  
    Brick_matrix_issparse                   html  
    Brick_matrix_maxdist                    html  
    Brick_matrix_minmax                     html  
    Brick_mcool_normalisation_exists        html  
    Brick_rangekey_exists                   html  
    Brick_return_region_position            html  
    Brick_vizart_plot_heatmap               html  
    Create_many_Bricks                      html  
    Create_many_Bricks_from_mcool           html  
    HiCBricks                               html  
    load_BrickContainer                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'HiCBricks' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HiCBricks' as HiCBricks_1.12.0.zip
* DONE (HiCBricks)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'HiCBricks' successfully unpacked and MD5 sums checked