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This page was generated on 2022-04-13 12:08:08 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for Harman on machv2


To the developers/maintainers of the Harman package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Harman.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 852/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Harman 1.22.0  (landing page)
Jason Ross
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/Harman
git_branch: RELEASE_3_14
git_last_commit: 07410e8
git_last_commit_date: 2021-10-26 12:27:33 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: Harman
Version: 1.22.0
Command: rm -rf Harman.buildbin-libdir && mkdir Harman.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Harman_1.22.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R Harman.buildbin-libdir
StartedAt: 2022-04-12 20:51:21 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 20:51:44 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 23.0 seconds
RetCode: 0
Status:   OK  
PackageFile: Harman_1.22.0.tgz
PackageFileSize: 1.546 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf Harman.buildbin-libdir && mkdir Harman.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Harman_1.22.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R Harman.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=Harman.buildbin-libdir Harman_1.22.0.tar.gz'
>>>>>>> 

* installing *source* package ‘Harman’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_ARRAYALIGNEMT=4 -D_USE_RCPP=1 -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include  `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "Rcpp:::CxxFlags()"` -I.  -fPIC  -Wall -g -O2  -c Harman.cpp -o Harman.o
In file included from Harman.cpp:182:
./CSelectRandom.h:394:40: warning: unused variable 'it2' [-Wunused-variable]
                        std::vector<double>::iterator  it1, it2 ;
                                                            ^
./CSelectRandom.h:392:11: warning: unused variable 'currindex' [-Wunused-variable]
                 size_t currindex ;
                        ^
./CSelectRandom.h:394:35: warning: unused variable 'it1' [-Wunused-variable]
                        std::vector<double>::iterator  it1, it2 ;
                                                       ^
./CSelectRandom.h:638:25: warning: unused variable 'ts2' [-Wunused-variable]
                        struct timespec ts1, ts2 ;
                                             ^
./CSelectRandom.h:639:18: warning: unused variable 'time2' [-Wunused-variable]
                        double time1, time2 ;
                                      ^
./CSelectRandom.h:638:20: warning: unused variable 'ts1' [-Wunused-variable]
                        struct timespec ts1, ts2 ;
                                        ^
./CSelectRandom.h:639:11: warning: unused variable 'time1' [-Wunused-variable]
                        double time1, time2 ;
                               ^
./CSelectRandom.h:1019:23: warning: unused variable 'randData2' [-Wunused-variable]
                                size_t randData1, randData2  ;
                                                  ^
8 warnings generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Harman.so Harman.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.14-bioc/meat/Harman.buildbin-libdir/00LOCK-Harman/00new/Harman/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Harman)


>>>>>>> 
>>>>>>> FIXING LINKS FOR Harman.buildbin-libdir/Harman/libs/Harman.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "Harman.buildbin-libdir/Harman/libs/Harman.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "Harman.buildbin-libdir/Harman/libs/Harman.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "Harman.buildbin-libdir/Harman/libs/Harman.so"