| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:38 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the GeomxTools package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GeomxTools.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 767/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GeomxTools 2.0.0 (landing page) Nicole Ortogero
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: GeomxTools |
| Version: 2.0.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GeomxTools_2.0.0.tar.gz && rm -rf GeomxTools.buildbin-libdir && mkdir GeomxTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeomxTools.buildbin-libdir GeomxTools_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GeomxTools_2.0.0.zip && rm GeomxTools_2.0.0.tar.gz GeomxTools_2.0.0.zip |
| StartedAt: 2022-04-12 06:57:13 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:59:43 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 149.3 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GeomxTools_2.0.0.tar.gz && rm -rf GeomxTools.buildbin-libdir && mkdir GeomxTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeomxTools.buildbin-libdir GeomxTools_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GeomxTools_2.0.0.zip && rm GeomxTools_2.0.0.tar.gz GeomxTools_2.0.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
3 4261k 3 135k 0 0 321k 0 0:00:13 --:--:-- 0:00:13 321k
31 4261k 31 1344k 0 0 946k 0 0:00:04 0:00:01 0:00:03 946k
76 4261k 76 3274k 0 0 1360k 0 0:00:03 0:00:02 0:00:01 1360k
100 4261k 100 4261k 0 0 1553k 0 0:00:02 0:00:02 --:--:-- 1553k
install for i386
* installing *source* package 'GeomxTools' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GeomxTools'
finding HTML links ... done
NanoStringGeoMxSet-class html
finding level-2 HTML links ... done
aggregateCounts html
checkQCFlags-NanoStringGeoMxSet-method
html
checkQCFlags html
countsShiftedByOne html
logtBase html
mixedModelDE html
ngeoMean html
ngeoSD html
normalize-NanoStringGeoMxSet-method html
readDccFile html
readNanoStringGeoMxSet html
readPKCFile html
setBackgroundQCFlags html
setBioProbeQCFlags html
setGeoMxQCFlags html
setQCFlags-NanoStringGeoMxSet-method html
setSegmentQCFlags html
setSeqQCFlags html
shiftCountsOne html
summarizeNegatives html
writeNanoStringGeoMxSet html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'GeomxTools' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GeomxTools' as GeomxTools_2.0.0.zip
* DONE (GeomxTools)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'GeomxTools' successfully unpacked and MD5 sums checked