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This page was generated on 2021-10-15 15:06:24 -0400 (Fri, 15 Oct 2021).

INSTALL results for SSPA on tokay2

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raw results

Package 1847/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SSPA 2.32.1  (landing page)
Maarten van Iterson
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/SSPA
git_branch: RELEASE_3_13
git_last_commit: 3a232b5
git_last_commit_date: 2021-05-19 13:50:22 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    ERROR  
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    ERROR    OK  
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    ERROR    OK  

Summary

Package: SSPA
Version: 2.32.1
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SSPA_2.32.1.tar.gz && rm -rf SSPA.buildbin-libdir && mkdir SSPA.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SSPA.buildbin-libdir SSPA_2.32.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SSPA_2.32.1.zip && rm SSPA_2.32.1.tar.gz SSPA_2.32.1.zip
StartedAt: 2021-10-14 08:23:53 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 08:25:05 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 72.3 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SSPA_2.32.1.tar.gz && rm -rf SSPA.buildbin-libdir && mkdir SSPA.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SSPA.buildbin-libdir SSPA_2.32.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SSPA_2.32.1.zip && rm SSPA_2.32.1.tar.gz SSPA_2.32.1.zip
###
##############################################################################
##############################################################################


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install for i386

* installing *source* package 'SSPA' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c SSPA_init.c -o SSPA_init.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c massdistc.c -o massdistc.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c nncgc.c -o nncgc.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o SSPA.dll tmp.def SSPA_init.o massdistc.o nncgc.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/SSPA.buildbin-libdir/00LOCK-SSPA/00new/SSPA/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SSPA'
    finding HTML links ... done
    Nutrigenomics                           html  
    cornerLcurve                            html  
    cornerScurve                            html  
    dbitri                                  html  
    deconvolution                           html  
    deepSAGE                                html  
    defineEffectSizeRange                   html  
    findroot                                html  
    midpoint                                html  
    nncg                                    html  
    pbitri                                  html  
    picardplot                              html  
    pilotData                               html  
    predictpower                            html  
    qbitri                                  html  
    rbitri                                  html  
    regularization                          html  
    sampleSize                              html  
    show-methods                            html  
    simdat                                  html  
    simpson                                 html  
    standardform                            html  
    tikhonov                                html  
    trapezoidal                             html  
    trimbin                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'SSPA' is deprecated and will be removed from Bioconductor
  version 3.14
** testing if installed package can be loaded from final location
Warning: Package 'SSPA' is deprecated and will be removed from Bioconductor
  version 3.14
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SSPA' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c SSPA_init.c -o SSPA_init.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c massdistc.c -o massdistc.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c nncgc.c -o nncgc.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o SSPA.dll tmp.def SSPA_init.o massdistc.o nncgc.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/SSPA.buildbin-libdir/SSPA/libs/x64
** testing if installed package can be loaded
Warning: Package 'SSPA' is deprecated and will be removed from Bioconductor
  version 3.14
* MD5 sums
packaged installation of 'SSPA' as SSPA_2.32.1.zip
* DONE (SSPA)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'SSPA' successfully unpacked and MD5 sums checked