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This page was generated on 2021-10-15 15:05:54 -0400 (Fri, 15 Oct 2021).

INSTALL results for SSPA on nebbiolo1

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raw results

Package 1847/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SSPA 2.32.1  (landing page)
Maarten van Iterson
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/SSPA
git_branch: RELEASE_3_13
git_last_commit: 3a232b5
git_last_commit_date: 2021-05-19 13:50:22 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    ERROR  
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    ERROR    OK  
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    ERROR    OK  

Summary

Package: SSPA
Version: 2.32.1
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL SSPA
StartedAt: 2021-10-14 06:07:30 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 06:07:36 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 6.3 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL SSPA
###
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* installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’
* installing *source* package ‘SSPA’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c SSPA_init.c -o SSPA_init.o
gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c massdistc.c -o massdistc.o
gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c nncgc.c -o nncgc.o
gcc -shared -L/home/biocbuild/bbs-3.13-bioc/R/lib -L/usr/local/lib -o SSPA.so SSPA_init.o massdistc.o nncgc.o -L/home/biocbuild/bbs-3.13-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.13-bioc/R/library/00LOCK-SSPA/00new/SSPA/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'SSPA' is deprecated and will be removed from Bioconductor
  version 3.14
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Warning: Package 'SSPA' is deprecated and will be removed from Bioconductor
  version 3.14
** testing if installed package keeps a record of temporary installation path
* DONE (SSPA)