| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:33:57 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the tidybulk package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1855/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| tidybulk 1.2.1 (landing page) Stefano Mangiola
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| Package: tidybulk |
| Version: 1.2.1 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/tidybulk_1.2.1.tar.gz && rm -rf tidybulk.buildbin-libdir && mkdir tidybulk.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tidybulk.buildbin-libdir tidybulk_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL tidybulk_1.2.1.zip && rm tidybulk_1.2.1.tar.gz tidybulk_1.2.1.zip |
| StartedAt: 2021-05-05 18:41:34 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 18:43:53 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 138.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/tidybulk_1.2.1.tar.gz && rm -rf tidybulk.buildbin-libdir && mkdir tidybulk.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tidybulk.buildbin-libdir tidybulk_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL tidybulk_1.2.1.zip && rm tidybulk_1.2.1.tar.gz tidybulk_1.2.1.zip
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install for i386
* installing *source* package 'tidybulk' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Note: wrong number of arguments to 'floor'
** help
*** installing help indices
converting help for package 'tidybulk'
finding HTML links ... done
X_cibersort html
add_attr html
add_class html
add_scaled_counts_bulk.calcNormFactor html
add_scaled_counts_bulk.get_low_expressed
html
adjust_abundance-methods html
aggregate_duplicated_transcripts_bulk html
aggregate_duplicates-methods html
as_matrix html
bind html
breast_tcga_mini html
check_if_counts_is_na html
check_if_duplicated_genes html
check_if_wrong_input html
cluster_elements-methods html
counts html
counts_ensembl html
counts_mini html
create_tt_from_bam_sam_bulk html
create_tt_from_tibble_bulk html
deconvolve_cellularity-methods html
describe_transcript html
distinct html
dplyr-methods html
drop_attr html
drop_class html
ensembl_symbol_mapping html
ensembl_to_symbol-methods html
error_if_counts_is_na html
error_if_duplicated_genes html
error_if_log_transformed html
error_if_wrong_input html
fill_NA_using_formula html
fill_NA_using_value html
fill_NA_with_row_median html
fill_missing_abundance-methods html
filter html
flybaseIDs html
full_join html
get_abundance_norm_if_exists html
get_adjusted_counts_for_unwanted_variation_bulk
html
get_bibliography-methods html
get_cell_type_proportions html
get_clusters_SNN_bulk html
get_clusters_kmeans_bulk html
get_differential_transcript_abundance_bulk
html
get_differential_transcript_abundance_bulk_voom
html
get_differential_transcript_abundance_deseq2
html
get_elements html
get_elements_features html
get_elements_features_abundance html
get_reduced_dimensions_MDS_bulk html
get_reduced_dimensions_PCA_bulk html
get_reduced_dimensions_TSNE_bulk html
get_rotated_dimensions html
get_sample html
get_sample_counts html
get_sample_transcript html
get_sample_transcript_counts html
get_scaled_counts_bulk html
get_symbol_from_ensembl html
get_transcript html
get_x_y_annotation_columns html
group_by html
identify_abundant-methods html
ifelse2_pipe html
ifelse_pipe html
impute_missing_abundance-methods html
inner_join html
keep_abundant-methods html
keep_variable-methods html
keep_variable_transcripts html
left_join html
log10_reverse_trans html
logit_trans html
mutate html
parse_formula html
parse_formula_survival html
pipe html
pivot_sample-methods html
pivot_transcript-methods html
prepend html
quo_names html
reduce_dimensions-methods html
reexports html
remove_redundancy-methods html
remove_redundancy_elements_though_reduced_dimensions
html
remove_redundancy_elements_through_correlation
html
rename html
right_join html
rotate_dimensions-methods html
rowwise html
run_epic html
run_llsr html
scale_abundance-methods html
scale_design html
se html
se_mini html
select_closest_pairs html
summarise html
symbol_to_entrez html
test_deseq2_df html
test_differential_abundance-methods html
test_differential_cellularity-methods html
test_differential_cellularity_ html
test_gene_enrichment-methods html
test_gene_enrichment_bulk_EGSEA html
test_gene_overrepresentation-methods html
tidybulk-methods html
tidybulk_SAM_BAM-methods html
tidybulk_to_SummarizedExperiment html
tidyr-methods html
vignette_manuscript_signature_boxplot html
vignette_manuscript_signature_tsne html
vignette_manuscript_signature_tsne2 html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'tidybulk' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'tidybulk' as tidybulk_1.2.1.zip
* DONE (tidybulk)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'tidybulk' successfully unpacked and MD5 sums checked