Aaron Lun
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/diffHic |
| Branch: RELEASE_3_12 |
| Last Commit: db4e4f8 |
| Last Changed Date: 2020-10-27 11:05:00 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:30:57 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the diffHic package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 478/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| diffHic 1.22.0 (landing page) Aaron Lun
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: diffHic |
| Version: 1.22.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/diffHic_1.22.0.tar.gz && rm -rf diffHic.buildbin-libdir && mkdir diffHic.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=diffHic.buildbin-libdir diffHic_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL diffHic_1.22.0.zip && rm diffHic_1.22.0.tar.gz diffHic_1.22.0.zip |
| StartedAt: 2021-05-05 18:21:09 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 18:26:26 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 316.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/diffHic_1.22.0.tar.gz && rm -rf diffHic.buildbin-libdir && mkdir diffHic.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=diffHic.buildbin-libdir diffHic_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL diffHic_1.22.0.zip && rm diffHic_1.22.0.tar.gz diffHic_1.22.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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100 1457k 100 1457k 0 0 36.3M 0 --:--:-- --:--:-- --:--:-- 37.4M
install for i386
* installing *source* package 'diffHic' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c binner.cpp -o binner.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c check_input.cpp -o check_input.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cluster_2d.cpp -o cluster_2d.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c count_background.cpp -o count_background.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c count_connect.cpp -o count_connect.o
count_connect.cpp: In function 'SEXPREC* count_connect(SEXP, SEXP)':
count_connect.cpp:57:30: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'const int' [-Wsign-compare]
for (size_t odex=0; odex < ncombos; ++odex) {
~~~~~^~~~~~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c count_patch.cpp -o count_patch.o
count_patch.cpp: In function 'SEXPREC* count_patch(SEXP, SEXP, SEXP, SEXP, SEXP)':
count_patch.cpp:45:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'const int' [-Wsign-compare]
for (size_t vecdex=0; vecdex<ncombos; ++vecdex) {
~~~~~~^~~~~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c directionality.cpp -o directionality.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.cpp -o init.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c iterative_correction.cpp -o iterative_correction.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c neighbors.cpp -o neighbors.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pair_stats.cpp -o pair_stats.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c quadrant_bg.cpp -o quadrant_bg.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c report_hic_pairs.cpp -o report_hic_pairs.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c trended_filter.cpp -o trended_filter.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils.cpp -o utils.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o diffHic.dll tmp.def binner.o check_input.o cluster_2d.o count_background.o count_connect.o count_patch.o directionality.o init.o iterative_correction.o neighbors.o pair_stats.o quadrant_bg.o report_hic_pairs.o trended_filter.o utils.o C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/usrlib/i386/libhts.a -LC:/extsoft/lib/i386 -lcurl -lrtmp -lssl -lssh2 -lcrypto -lgdi32 -lz -lws2_32 -lwldap32 -lwinmm -lidn -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/diffHic.buildbin-libdir/00LOCK-diffHic/00new/diffHic/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'diffHic'
finding HTML links ... done
DNaseHiC html
annotatePairs html
finding level-2 HTML links ... done
boxPairs html
clusterPairs html
compartmentalize html
connectCounts html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpQpXAEb/R.INSTALLf801bb633e/diffHic/man/connectCounts.Rd:100: file link 'ReverseStrictGInteractions-class' in package 'InteractionSet' does not exist and so has been treated as a topic
consolidatePairs html
correctedContact html
cutGenome html
diClusters html
diffHicUsersGuide html
domainDirections html
enrichedPairs html
extractPatch html
filterDiag html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpQpXAEb/R.INSTALLf801bb633e/diffHic/man/filterDiag.Rd:43: file link 'pairdist' in package 'InteractionSet' does not exist and so has been treated as a topic
filterPeaks html
filters html
getArea html
getPairData html
loadData html
marginCounts html
mergeCMs html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpQpXAEb/R.INSTALLf801bb633e/diffHic/man/mergeCMs.Rd:13: file link 'deflate' in package 'InteractionSet' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpQpXAEb/R.INSTALLf801bb633e/diffHic/man/mergeCMs.Rd:22: file link 'deflate' in package 'InteractionSet' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpQpXAEb/R.INSTALLf801bb633e/diffHic/man/mergeCMs.Rd:46: file link 'deflate' in package 'InteractionSet' does not exist and so has been treated as a topic
mergePairs html
neighborCounts html
normalizeCNV html
pairParam html
plotDI html
plotPlaid html
preparePairs html
prunePairs html
readMTX2IntSet html
savePairs html
squareCounts html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpQpXAEb/R.INSTALLf801bb633e/diffHic/man/squareCounts.Rd:108: file link 'ReverseStrictGInteractions-class' in package 'InteractionSet' does not exist and so has been treated as a topic
totalCounts html
** building package indices
** installing vignettes
'diffHic.Rnw'
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'diffHic' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c binner.cpp -o binner.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c check_input.cpp -o check_input.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cluster_2d.cpp -o cluster_2d.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c count_background.cpp -o count_background.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c count_connect.cpp -o count_connect.o
count_connect.cpp: In function 'SEXPREC* count_connect(SEXP, SEXP)':
count_connect.cpp:57:30: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'const int' [-Wsign-compare]
for (size_t odex=0; odex < ncombos; ++odex) {
~~~~~^~~~~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c count_patch.cpp -o count_patch.o
count_patch.cpp: In function 'SEXPREC* count_patch(SEXP, SEXP, SEXP, SEXP, SEXP)':
count_patch.cpp:45:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'const int' [-Wsign-compare]
for (size_t vecdex=0; vecdex<ncombos; ++vecdex) {
~~~~~~^~~~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c directionality.cpp -o directionality.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.cpp -o init.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c iterative_correction.cpp -o iterative_correction.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c neighbors.cpp -o neighbors.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pair_stats.cpp -o pair_stats.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c quadrant_bg.cpp -o quadrant_bg.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c report_hic_pairs.cpp -o report_hic_pairs.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c trended_filter.cpp -o trended_filter.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils.cpp -o utils.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o diffHic.dll tmp.def binner.o check_input.o cluster_2d.o count_background.o count_connect.o count_patch.o directionality.o init.o iterative_correction.o neighbors.o pair_stats.o quadrant_bg.o report_hic_pairs.o trended_filter.o utils.o C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rhtslib/usrlib/x64/libhts.a -LC:/extsoft/lib/x64 -lcurl -lrtmp -lssl -lssh2 -lcrypto -lgdi32 -lz -lws2_32 -lwldap32 -lwinmm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/diffHic.buildbin-libdir/diffHic/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'diffHic' as diffHic_1.22.0.zip
* DONE (diffHic)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'diffHic' successfully unpacked and MD5 sums checked