Jianqiang Sun
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/TCC |
| Branch: RELEASE_3_12 |
| Last Commit: 40c62a0 |
| Last Changed Date: 2020-10-27 10:52:27 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:33:55 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the TCC package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1841/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| TCC 1.30.0 (landing page) Jianqiang Sun
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: TCC |
| Version: 1.30.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/TCC_1.30.0.tar.gz && rm -rf TCC.buildbin-libdir && mkdir TCC.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCC.buildbin-libdir TCC_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL TCC_1.30.0.zip && rm TCC_1.30.0.tar.gz TCC_1.30.0.zip |
| StartedAt: 2021-05-05 18:15:56 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 18:17:02 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 66.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/TCC_1.30.0.tar.gz && rm -rf TCC.buildbin-libdir && mkdir TCC.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCC.buildbin-libdir TCC_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL TCC_1.30.0.zip && rm TCC_1.30.0.tar.gz TCC_1.30.0.zip
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install for i386
* installing *source* package 'TCC' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'calcNormFactors' in package 'TCC'
** help
*** installing help indices
converting help for package 'TCC'
finding HTML links ... done
ROKU html
TCC-class html
TCC html
WAD html
arab html
calcAUCValue html
calcNormFactors html
clusterSample html
estimateDE html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpuUpSOh/R.INSTALL20b4648b2d0e/TCC/man/estimateDE.Rd:60: file link 'glmLRT' in package 'edgeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpuUpSOh/R.INSTALL20b4648b2d0e/TCC/man/estimateDE.Rd:67: file link 'glmLRT' in package 'edgeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpuUpSOh/R.INSTALL20b4648b2d0e/TCC/man/estimateDE.Rd:75: file link 'getPriors.NB' in package 'baySeq' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpuUpSOh/R.INSTALL20b4648b2d0e/TCC/man/estimateDE.Rd:122: file link 'glmLRT' in package 'edgeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpuUpSOh/R.INSTALL20b4648b2d0e/TCC/man/estimateDE.Rd:131: file link 'getPriors.NB' in package 'baySeq' does not exist and so has been treated as a topic
filterLowCountGenes html
getNormalizedData html
getResult html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpuUpSOh/R.INSTALL20b4648b2d0e/TCC/man/getResult.Rd:20: file link 'plot' in package 'TCC' does not exist and so has been treated as a topic
hypoData html
hypoData_mg html
hypoData_ts html
makeFCMatrix html
nakai html
plot.TCC html
plotFCPseudocolor html
simulateReadCounts html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'TCC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TCC' as TCC_1.30.0.zip
* DONE (TCC)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'TCC' successfully unpacked and MD5 sums checked