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INSTALL report for PGA on malbec1

This page was generated on 2021-05-06 12:28:35 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the PGA package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1331/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PGA 1.20.0  (landing page)
Bo Wen , Shaohang Xu
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/PGA
Branch: RELEASE_3_12
Last Commit: 4e7418a
Last Changed Date: 2020-10-27 11:05:59 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  ERROR    ERROR  skippedskipped

Summary

Package: PGA
Version: 1.20.0
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL PGA
StartedAt: 2021-05-05 17:17:49 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 17:18:38 -0400 (Wed, 05 May 2021)
EllapsedTime: 49.0 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL PGA
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* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘PGA’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning message:
Package 'rTANDEM' is deprecated and will be removed from Bioconductor
  version 3.13 
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'rTANDEM' is deprecated and will be removed from Bioconductor
  version 3.13
Warning: Package 'PGA' is deprecated and will be removed from Bioconductor
  version 3.13
** testing if installed package can be loaded from final location
Warning: Package 'rTANDEM' is deprecated and will be removed from Bioconductor
  version 3.13
Warning: Package 'PGA' is deprecated and will be removed from Bioconductor
  version 3.13
** testing if installed package keeps a record of temporary installation path
* DONE (PGA)