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INSTALL report for OncoScore on tokay1

This page was generated on 2021-05-06 12:32:37 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the OncoScore package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1263/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OncoScore 1.18.0  (landing page)
Luca De Sano
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/OncoScore
Branch: RELEASE_3_12
Last Commit: 73d475a
Last Changed Date: 2020-10-27 11:12:51 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: OncoScore
Version: 1.18.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/OncoScore_1.18.0.tar.gz && rm -rf OncoScore.buildbin-libdir && mkdir OncoScore.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OncoScore.buildbin-libdir OncoScore_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL OncoScore_1.18.0.zip && rm OncoScore_1.18.0.tar.gz OncoScore_1.18.0.zip
StartedAt: 2021-05-05 17:17:07 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 17:17:39 -0400 (Wed, 05 May 2021)
EllapsedTime: 31.8 seconds
RetCode: 0
Status:   OK   

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/OncoScore_1.18.0.tar.gz && rm -rf OncoScore.buildbin-libdir && mkdir OncoScore.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OncoScore.buildbin-libdir OncoScore_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL OncoScore_1.18.0.zip && rm OncoScore_1.18.0.tar.gz OncoScore_1.18.0.zip
###
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install for i386

* installing *source* package 'OncoScore' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'OncoScore'
    finding HTML links ... done
    combine.query.results                   html  
    combine.single.matrix                   html  
    compute.frequencies.scores              html  
    compute.oncoscore                       html  
    compute.oncoscore.from.region           html  
    compute.oncoscore.timeseries            html  
    estimate.oncogenes                      html  
    genes                                   html  
    get.genes.from.biomart                  html  
    get.list.from.xml                       html  
    get.pubmed.driver.analysis              html  
    perform.query                           html  
    perform.query.from.region               html  
    perform.query.timeseries                html  
    plot.oncoscore                          html  
    plot.oncoscore.timeseries               html  
    query                                   html  
    query.timepoints                        html  
    timepoints                              html  
    try.scan                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'OncoScore' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'OncoScore' as OncoScore_1.18.0.zip
* DONE (OncoScore)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'OncoScore' successfully unpacked and MD5 sums checked