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INSTALL report for KnowSeq on tokay1

This page was generated on 2021-05-06 12:31:55 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the KnowSeq package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 944/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
KnowSeq 1.4.5  (landing page)
Daniel Castillo-Secilla
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/KnowSeq
Branch: RELEASE_3_12
Last Commit: c76e9c0
Last Changed Date: 2021-05-02 18:24:59 -0400 (Sun, 02 May 2021)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: KnowSeq
Version: 1.4.5
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/KnowSeq_1.4.5.tar.gz && rm -rf KnowSeq.buildbin-libdir && mkdir KnowSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=KnowSeq.buildbin-libdir KnowSeq_1.4.5.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL KnowSeq_1.4.5.zip && rm KnowSeq_1.4.5.tar.gz KnowSeq_1.4.5.zip
StartedAt: 2021-05-05 19:15:47 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 19:16:44 -0400 (Wed, 05 May 2021)
EllapsedTime: 57.1 seconds
RetCode: 0
Status:   OK   

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/KnowSeq_1.4.5.tar.gz && rm -rf KnowSeq.buildbin-libdir && mkdir KnowSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=KnowSeq.buildbin-libdir KnowSeq_1.4.5.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL KnowSeq_1.4.5.zip && rm KnowSeq_1.4.5.tar.gz KnowSeq_1.4.5.zip
###
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100 3924k  100 3924k    0     0  54.8M      0 --:--:-- --:--:-- --:--:-- 55.5M

install for i386

* installing *source* package 'KnowSeq' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning message:
In .recacheSubclasses(def@className, def, env) :
  undefined subclass "numericVector" of class "Mnumeric"; definition not updated
** help
*** installing help indices
  converting help for package 'KnowSeq'
    finding HTML links ... done
    DEGsEvidences                           html  
    DEGsExtraction                          html  
    DEGsToDiseases                          html  
    DEGsToPathways                          html  
    RNAseqQA                                html  
    batchEffectRemoval                      html  
    calculateGeneExpressionValues           html  
    countsToMatrix                          html  
    dataPlot                                html  
    downloadPublicSeries                    html  
    featureSelection                        html  
    fileMove                                html  
    gdcClientDownload                       html  
    geneOntologyEnrichment                  html  
    getGenesAnnotation                      html  
    hisatAlignment                          html  
    knn_test                                html  
    knn_trn                                 html  
    knowseqReport                           html  
    plotConfMatrix                          html  
    rawAlignment                            html  
    rf_test                                 html  
    rf_trn                                  html  
    sraToFastq                              html  
    svm_test                                html  
    svm_trn                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in .recacheSubclasses(def@className, def, env) :
  undefined subclass "numericVector" of class "Mnumeric"; definition not updated
** testing if installed package can be loaded from final location
Warning in .recacheSubclasses(def@className, def, env) :
  undefined subclass "numericVector" of class "Mnumeric"; definition not updated
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'KnowSeq' ...
** testing if installed package can be loaded
Warning in .recacheSubclasses(def@className, def, env) :
  undefined subclass "numericVector" of class "Mnumeric"; definition not updated
* MD5 sums
packaged installation of 'KnowSeq' as KnowSeq_1.4.5.zip
* DONE (KnowSeq)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'KnowSeq' successfully unpacked and MD5 sums checked