Back to Multiple platform build/check report for BioC 3.11
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

BUILD report for CTDquerier on celaya2

This page was generated on 2020-01-16 13:50:09 -0500 (Thu, 16 Jan 2020).

Package 389/1818HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CTDquerier 1.7.1
Carles Hernandez-Ferrer
Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020)
URL: https://git.bioconductor.org/packages/CTDquerier
Branch: master
Last Commit: b8e8760
Last Changed Date: 2019-11-18 09:02:37 -0500 (Mon, 18 Nov 2019)
malbec2 Linux (Ubuntu 18.04.3 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: CTDquerier
Version: 1.7.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CTDquerier
StartedAt: 2020-01-15 23:45:59 -0500 (Wed, 15 Jan 2020)
EndedAt: 2020-01-15 23:47:06 -0500 (Wed, 15 Jan 2020)
EllapsedTime: 66.9 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CTDquerier
###
##############################################################################
##############################################################################


* checking for file ‘CTDquerier/DESCRIPTION’ ... OK
* preparing ‘CTDquerier’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘batch_query.Rmd’ using rmarkdown
Quitting from lines 110-113 (batch_query.Rmd) 
Error: processing vignette 'batch_query.Rmd' failed with diagnostics:
bfcadd() failed; see warnings()
--- failed re-building ‘batch_query.Rmd’

--- re-building ‘case_study.Rmd’ using rmarkdown
Warning in has_utility("convert", "ImageMagick") :
  ImageMagick not installed or not in PATH
Quitting from lines 250-251 (case_study.Rmd) 
Error: processing vignette 'case_study.Rmd' failed with diagnostics:
bfcadd() failed; see warnings()
--- failed re-building ‘case_study.Rmd’

--- re-building ‘vignette.Rmd’ using rmarkdown
Quitting from lines 96-102 (vignette.Rmd) 
Error: processing vignette 'vignette.Rmd' failed with diagnostics:
bfcadd() failed; see warnings()
--- failed re-building ‘vignette.Rmd’

SUMMARY: processing the following files failed:
  ‘batch_query.Rmd’ ‘case_study.Rmd’ ‘vignette.Rmd’

Error: Vignette re-building failed.
Execution halted