CTDquerier

DOI: 10.18129/B9.bioc.CTDquerier    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CTDquerier.

Package for CTDbase data query, visualization and downstream analysis

Bioconductor version: Release (3.11)

Package to retrieve and visualize data from the Comparative Toxicogenomics Database (http://ctdbase.org/). The downloaded data is formated as DataFrames for further downstream analyses.

Author: Carles Hernandez-Ferrer <carles.hernandez at isglobal.org>, Jaun R. Gonzalez <juanr.gonzalez at isglobal.org>

Maintainer: Carles Hernandez-Ferrer <carles.hernandez at isglobal.org>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CTDquerier")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	BiomedicalInformatics, DataImport, DataRepresentation, GO, GeneSetEnrichment, Infrastructure, KEGG, Network, NetworkEnrichment, Pathways, Software
Version	1.8.0
In Bioconductor since	BioC 3.7 (R-3.5) (2.5 years)
License	MIT + file LICENSE
Depends	R (>= 3.4.0)
Imports	RCurl, stringr, S4Vectors, stringdist, ggplot2, igraph, utils, grid, gridExtra, methods, stats, BiocFileCache, rappdirs
LinkingTo
Suggests	BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/CTDquerier
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CTDquerier
Package Short Url	https://bioconductor.org/packages/CTDquerier/
Package Downloads Report	Download Stats