Hector Corrada Bravo
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/epivizr |
| Branch: RELEASE_3_10 |
| Last Commit: 25b07cb |
| Last Changed Date: 2019-10-29 13:08:48 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:22:13 -0400 (Wed, 15 Apr 2020).
| Package 532/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| epivizr 2.16.0 Hector Corrada Bravo
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped |
| Package: epivizr |
| Version: 2.16.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/epivizr_2.16.0.tar.gz && rm -rf epivizr.buildbin-libdir && mkdir epivizr.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=epivizr.buildbin-libdir epivizr_2.16.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL epivizr_2.16.0.zip && rm epivizr_2.16.0.tar.gz epivizr_2.16.0.zip |
| StartedAt: 2020-04-14 20:03:11 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 20:04:03 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 51.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/epivizr_2.16.0.tar.gz && rm -rf epivizr.buildbin-libdir && mkdir epivizr.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=epivizr.buildbin-libdir epivizr_2.16.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL epivizr_2.16.0.zip && rm epivizr_2.16.0.tar.gz epivizr_2.16.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 932k 100 932k 0 0 7785k 0 --:--:-- --:--:-- --:--:-- 8036k
install for i386
* installing *source* package 'epivizr' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'epivizr'
finding HTML links ... done
EpivizApp-class html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpM5hfes/R.INSTALLf6820221b8c/epivizr/man/EpivizApp-class.Rd:14: file link 'EpivizServer' in package 'epivizrServer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpM5hfes/R.INSTALLf6820221b8c/epivizr/man/EpivizApp-class.Rd:16: file link 'EpivizDataMgr' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpM5hfes/R.INSTALLf6820221b8c/epivizr/man/EpivizApp-class.Rd:33: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpM5hfes/R.INSTALLf6820221b8c/epivizr/man/EpivizApp-class.Rd:57: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpM5hfes/R.INSTALLf6820221b8c/epivizr/man/EpivizApp-class.Rd:58: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpM5hfes/R.INSTALLf6820221b8c/epivizr/man/EpivizApp-class.Rd:67: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
EpivizChart-class html
EpivizChartMgr-class html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpM5hfes/R.INSTALLf6820221b8c/epivizr/man/EpivizChartMgr-class.Rd:33: file link 'EpivizServer' in package 'epivizrServer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpM5hfes/R.INSTALLf6820221b8c/epivizr/man/EpivizChartMgr-class.Rd:55: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpM5hfes/R.INSTALLf6820221b8c/epivizr/man/EpivizChartMgr-class.Rd:56: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpM5hfes/R.INSTALLf6820221b8c/epivizr/man/EpivizChartMgr-class.Rd:60: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpM5hfes/R.INSTALLf6820221b8c/epivizr/man/EpivizChartMgr-class.Rd:121: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpM5hfes/R.INSTALLf6820221b8c/epivizr/man/EpivizChartMgr-class.Rd:126: file link 'EpivizMeasurement' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpM5hfes/R.INSTALLf6820221b8c/epivizr/man/EpivizChartMgr-class.Rd:128: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
restartEpiviz html
show-EpivizChart-method html
startEpiviz html
tcga_colon_blocks html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpM5hfes/R.INSTALLf6820221b8c/epivizr/man/tcga_colon_blocks.Rd:7: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpM5hfes/R.INSTALLf6820221b8c/epivizr/man/tcga_colon_blocks.Rd:29: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
tcga_colon_curves html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpM5hfes/R.INSTALLf6820221b8c/epivizr/man/tcga_colon_curves.Rd:7: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpM5hfes/R.INSTALLf6820221b8c/epivizr/man/tcga_colon_curves.Rd:25: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
tcga_colon_expression html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpM5hfes/R.INSTALLf6820221b8c/epivizr/man/tcga_colon_expression.Rd:23: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpM5hfes/R.INSTALLf6820221b8c/epivizr/man/tcga_colon_expression.Rd:7: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpM5hfes/R.INSTALLf6820221b8c/epivizr/man/tcga_colon_expression.Rd:20: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'epivizr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'epivizr' as epivizr_2.16.0.zip
* DONE (epivizr)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'epivizr' successfully unpacked and MD5 sums checked