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BUILD BIN report for epivizr on tokay1

This page was generated on 2020-04-15 12:22:13 -0400 (Wed, 15 Apr 2020).

Package 532/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
epivizr 2.16.0
Hector Corrada Bravo
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/epivizr
Branch: RELEASE_3_10
Last Commit: 25b07cb
Last Changed Date: 2019-10-29 13:08:48 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: epivizr
Version: 2.16.0
Command: rm -rf epivizr.buildbin-libdir && mkdir epivizr.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=epivizr.buildbin-libdir epivizr_2.16.0.tar.gz
StartedAt: 2020-04-15 08:40:01 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 08:41:17 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 76.7 seconds
RetCode: 0
Status:  OK  
PackageFile: epivizr_2.16.0.zip
PackageFileSize: 1.539 MiB

Command output

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### Running command:
###
###   rm -rf epivizr.buildbin-libdir && mkdir epivizr.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=epivizr.buildbin-libdir epivizr_2.16.0.tar.gz
###
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install for i386

* installing *source* package 'epivizr' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'epivizr'
    finding HTML links ... done
    EpivizApp-class                         html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp2x2zHp/R.INSTALL314824286ff1/epivizr/man/EpivizApp-class.Rd:14: file link 'EpivizServer' in package 'epivizrServer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp2x2zHp/R.INSTALL314824286ff1/epivizr/man/EpivizApp-class.Rd:16: file link 'EpivizDataMgr' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp2x2zHp/R.INSTALL314824286ff1/epivizr/man/EpivizApp-class.Rd:33: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp2x2zHp/R.INSTALL314824286ff1/epivizr/man/EpivizApp-class.Rd:57: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp2x2zHp/R.INSTALL314824286ff1/epivizr/man/EpivizApp-class.Rd:58: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp2x2zHp/R.INSTALL314824286ff1/epivizr/man/EpivizApp-class.Rd:67: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
    EpivizChart-class                       html  
    EpivizChartMgr-class                    html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp2x2zHp/R.INSTALL314824286ff1/epivizr/man/EpivizChartMgr-class.Rd:33: file link 'EpivizServer' in package 'epivizrServer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp2x2zHp/R.INSTALL314824286ff1/epivizr/man/EpivizChartMgr-class.Rd:55: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp2x2zHp/R.INSTALL314824286ff1/epivizr/man/EpivizChartMgr-class.Rd:56: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp2x2zHp/R.INSTALL314824286ff1/epivizr/man/EpivizChartMgr-class.Rd:60: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp2x2zHp/R.INSTALL314824286ff1/epivizr/man/EpivizChartMgr-class.Rd:121: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp2x2zHp/R.INSTALL314824286ff1/epivizr/man/EpivizChartMgr-class.Rd:126: file link 'EpivizMeasurement' in package 'epivizrData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp2x2zHp/R.INSTALL314824286ff1/epivizr/man/EpivizChartMgr-class.Rd:128: file link 'EpivizData' in package 'epivizrData' does not exist and so has been treated as a topic
    restartEpiviz                           html  
    show-EpivizChart-method                 html  
    startEpiviz                             html  
    tcga_colon_blocks                       html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp2x2zHp/R.INSTALL314824286ff1/epivizr/man/tcga_colon_blocks.Rd:7: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp2x2zHp/R.INSTALL314824286ff1/epivizr/man/tcga_colon_blocks.Rd:29: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    tcga_colon_curves                       html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp2x2zHp/R.INSTALL314824286ff1/epivizr/man/tcga_colon_curves.Rd:7: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp2x2zHp/R.INSTALL314824286ff1/epivizr/man/tcga_colon_curves.Rd:25: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    tcga_colon_expression                   html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp2x2zHp/R.INSTALL314824286ff1/epivizr/man/tcga_colon_expression.Rd:23: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp2x2zHp/R.INSTALL314824286ff1/epivizr/man/tcga_colon_expression.Rd:7: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp2x2zHp/R.INSTALL314824286ff1/epivizr/man/tcga_colon_expression.Rd:20: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'epivizr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'epivizr' as epivizr_2.16.0.zip
* DONE (epivizr)