Package: SEPA

Version: 1.16.0

Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/SEPA_1.16.0.tar.gz && rm -rf SEPA.buildbin-libdir && mkdir SEPA.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SEPA.buildbin-libdir SEPA_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL SEPA_1.16.0.zip && rm SEPA_1.16.0.tar.gz SEPA_1.16.0.zip

StartedAt: 2020-04-14 18:58:51 -0400 (Tue, 14 Apr 2020)

EndedAt: 2020-04-14 18:59:40 -0400 (Tue, 14 Apr 2020)

EllapsedTime: 48.0 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/SEPA_1.16.0.tar.gz && rm -rf SEPA.buildbin-libdir && mkdir SEPA.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SEPA.buildbin-libdir SEPA_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL SEPA_1.16.0.zip && rm SEPA_1.16.0.tar.gz SEPA_1.16.0.zip
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install for i386

* installing *source* package 'SEPA' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SEPA'
    finding HTML links ... done
    HSMMdata                                html  
    SEPA                                    html  
    SEPAui                                  html  
    patternGOanalysis                       html  
    patternsummary                          html  
    pseudotime                              html  
    pseudotimepattern                       html  
    pseudotimevisualize                     html  
    truetime                                html  
    truetimepattern                         html  
    truetimevisualize                       html  
    windowGOanalysis                        html  
    windowGOvisualize                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'SEPA' is deprecated and will be removed from Bioconductor
  version 3.11
** testing if installed package can be loaded from final location
Warning: Package 'SEPA' is deprecated and will be removed from Bioconductor
  version 3.11
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SEPA' ...
** testing if installed package can be loaded
Warning: Package 'SEPA' is deprecated and will be removed from Bioconductor
  version 3.11
* MD5 sums
packaged installation of 'SEPA' as SEPA_1.16.0.zip
* DONE (SEPA)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'SEPA' successfully unpacked and MD5 sums checked