Michael Skinnider
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/PrInCE |
| Branch: RELEASE_3_10 |
| Last Commit: 4fdbb74 |
| Last Changed Date: 2019-10-29 13:11:31 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:31:57 -0400 (Wed, 15 Apr 2020).
| Package 1301/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| PrInCE 1.2.0 Michael Skinnider
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: PrInCE |
| Version: 1.2.0 |
| Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:PrInCE.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings PrInCE_1.2.0.tar.gz |
| StartedAt: 2020-04-15 05:38:58 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 05:44:16 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 318.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: PrInCE.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:PrInCE.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings PrInCE_1.2.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/PrInCE.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'PrInCE/DESCRIPTION' ... OK
* this is package 'PrInCE' version '1.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PrInCE' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
predict_ensemble 7.69 0.47 8.15
calculate_precision 7.74 0.33 8.07
predict_interactions 7.52 0.41 7.92
PrInCE 5.75 0.18 5.94
threshold_precision 5.46 0.25 5.72
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
predict_interactions 8.26 0.22 8.49
calculate_precision 7.41 0.17 7.58
predict_ensemble 6.36 0.33 6.68
PrInCE 6.00 0.20 6.20
threshold_precision 5.59 0.08 5.67
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
PrInCE.Rcheck/00install.out
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/PrInCE_1.2.0.tar.gz && rm -rf PrInCE.buildbin-libdir && mkdir PrInCE.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PrInCE.buildbin-libdir PrInCE_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL PrInCE_1.2.0.zip && rm PrInCE_1.2.0.tar.gz PrInCE_1.2.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 1586k 100 1586k 0 0 22.6M 0 --:--:-- --:--:-- --:--:-- 23.8M
install for i386
* installing *source* package 'PrInCE' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
Loading required namespace: PrInCE
Registered S3 method overwritten by 'quantmod':
method from
as.zoo.data.frame zoo
*** installing help indices
converting help for package 'PrInCE'
finding HTML links ... done
PrInCE html
finding level-2 HTML links ... done
adjacency_matrix_from_data_frame html
adjacency_matrix_from_list html
aic html
build_gaussians html
calculate_features html
calculate_precision html
check_gaussians html
choose_gaussians html
clean_profile html
clean_profiles html
co_apex html
concatenate_features html
detect_complexes html
filter_profiles html
fit_curve html
fit_gaussians html
gold_standard html
impute_neighbors html
is_unweighted html
is_weighted html
kristensen html
kristensen_gaussians html
make_feature_from_data_frame html
make_feature_from_expression html
make_initial_conditions html
make_labels html
match_matrix_dimensions html
predict_ensemble html
predict_interactions html
replace_missing_data html
scott html
scott_gaussians html
threshold_precision html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'PrInCE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PrInCE' as PrInCE_1.2.0.zip
* DONE (PrInCE)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'PrInCE' successfully unpacked and MD5 sums checked
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PrInCE.Rcheck/examples_i386/PrInCE-Ex.timings
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PrInCE.Rcheck/examples_x64/PrInCE-Ex.timings
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