Package: PrInCE

Version: 1.2.0

Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:PrInCE.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings PrInCE_1.2.0.tar.gz

StartedAt: 2020-04-15 06:20:43 -0400 (Wed, 15 Apr 2020)

EndedAt: 2020-04-15 06:24:34 -0400 (Wed, 15 Apr 2020)

EllapsedTime: 231.6 seconds

RetCode: 0

Status:  OK

CheckDir: PrInCE.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:PrInCE.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings PrInCE_1.2.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.10-bioc/meat/PrInCE.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PrInCE/DESCRIPTION’ ... OK
* this is package ‘PrInCE’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PrInCE’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
calculate_precision  8.208  0.092   8.370
PrInCE               7.552  0.068   7.733
predict_interactions 7.188  0.048   7.266
predict_ensemble     7.028  0.064   7.153
threshold_precision  6.248  0.044   6.301
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL PrInCE
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* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘PrInCE’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
Loading required namespace: PrInCE
Registered S3 method overwritten by 'quantmod':
  method            from
  as.zoo.data.frame zoo 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PrInCE)

name	user	system	elapsed
PrInCE	7.552	0.068	7.733
adjacency_matrix_from_data_frame	0.000	0.000	0.002
adjacency_matrix_from_list	2.064	0.060	2.149
build_gaussians	0.836	0.024	0.863
calculate_precision	8.208	0.092	8.370
check_gaussians	0.204	0.044	0.248
choose_gaussians	0.332	0.000	0.332
clean_profile	0.056	0.008	0.065
clean_profiles	0.080	0.004	0.081
co_apex	0.208	0.040	0.247
detect_complexes	0.152	0.012	0.166
filter_profiles	0.488	0.000	0.490
fit_curve	0.272	0.008	0.281
fit_gaussians	0.244	0.004	0.249
impute_neighbors	0.060	0.000	0.058
is_unweighted	2.216	0.004	2.247
is_weighted	2.300	0.004	2.314
make_initial_conditions	0.072	0.004	0.077
make_labels	2.088	0.004	2.114
match_matrix_dimensions	3.192	0.008	3.213
predict_ensemble	7.028	0.064	7.153
predict_interactions	7.188	0.048	7.266
threshold_precision	6.248	0.044	6.301